RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 CCDC170Q8IYT3 715 aa13.25□□□□□ -0.29
CXCL12-202ENST00000374426 FAM71DQ8N9W8 422 aa13.25□□□□□ -0.29
CXCL12-202ENST00000374426 LINC01555Q8NAE3 123 aa13.25□□□□□ -0.29
CXCL12-202ENST00000374426 TTC13Q8NBP0 860 aa13.25□□□□□ -0.29
CXCL12-202ENST00000374426 ST6GALNAC3Q8NDV1 305 aa13.25□□□□□ -0.29
CXCL12-202ENST00000374426 PPP4R1Q8TF05 950 aa13.25□□□□□ -0.29
CXCL12-202ENST00000374426 FKBP10Q96AY3 582 aa13.25□□□□□ -0.29
CXCL12-202ENST00000374426 MENTQ9BUN1 341 aa13.25□□□□□ -0.29
CXCL12-202ENST00000374426 SLC6A20Q9NP91 592 aa13.25□□□□□ -0.29
CXCL12-202ENST00000374426 AGPAT4Q9NRZ5 378 aa13.25□□□□□ -0.29
CXCL12-202ENST00000374426 NOVA2Q9UNW9 492 aaKnown RBP13.25□□□□□ -0.29
CXCL12-202ENST00000374426 DUSP10Q9Y6W6 482 aa13.25□□□□□ -0.29
CXCL12-202ENST00000374426 ZGRF1Q86YA3 2104 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 A0A1B0GX78 115 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 CCDC162PA2VCL2 907 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 SOCS6O14544 535 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 OR1I1O60431 355 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 ZNF189O75820 626 aaPredicted RBP13.24□□□□□ -0.29
CXCL12-202ENST00000374426 ONECUT2O95948 504 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 RAB28P51157 221 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 GDF10P55107 478 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 NKG7Q16617 165 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 SYTL3Q4VX76 610 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 CCDC38Q502W7 563 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 KIRREL2Q6UWL6 708 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 IGFL2Q6UWQ7 119 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 COX15Q7KZN9 410 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 KCNMB4Q86W47 210 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 MCATQ8IVS2 390 aaKnown RBP13.24□□□□□ -0.29
CXCL12-202ENST00000374426 LMNTD1Q8N9Z9 388 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 RNF214Q8ND24 703 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 DLG3Q92796 817 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 SPSB2Q99619 263 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 IMPACTQ9P2X3 320 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 CDC23Q9UJX2 597 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 HS3ST3B1Q9Y662 390 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 NUP210LQ5VU65 1888 aa13.24□□□□□ -0.29
CXCL12-202ENST00000374426 ANKRD17O75179 2603 aaKnown RBP13.24□□□□□ -0.29
CXCL12-202ENST00000374426 CROCCQ5TZA2 2017 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 E2F3O00716 465 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 KDM1AO60341 852 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 ALBP02768 609 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 OR56A5P0C7T3 313 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 MCM3P25205 808 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 CCR7P32248 378 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 ARSFP54793 590 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 CSE1LP55060 971 aaKnown RBP13.23□□□□□ -0.29
CXCL12-202ENST00000374426 GRB7Q14451 532 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 DNAJC21Q5F1R6 531 aaKnown RBP13.23□□□□□ -0.29
CXCL12-202ENST00000374426 AGAP7PQ5VUJ5 663 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 C1QL3Q5VWW1 255 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 VRK3Q8IV63 474 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 SLC22A15Q8IZD6 547 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 TAB3Q8N5C8 712 aaPredicted RBP13.23□□□□□ -0.29
CXCL12-202ENST00000374426 C2orf73Q8N5S3 287 aaPredicted RBP13.23□□□□□ -0.29
CXCL12-202ENST00000374426 OR13J1Q8NGT2 312 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 GRHL3Q8TE85 626 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.23□□□□□ -0.29
CXCL12-202ENST00000374426 AGAP4Q96P64 663 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 ALS2CR12Q96Q35 445 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 SLC26A1Q9H2B4 701 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 WDR54Q9H977 334 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 LUC7LQ9NQ29 371 aaKnown RBP13.23□□□□□ -0.29
CXCL12-202ENST00000374426 CTSFQ9UBX1 484 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 CIDEBQ9UHD4 219 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 POLQO75417 2590 aa13.23□□□□□ -0.29
CXCL12-202ENST00000374426 DSCR3O14972 297 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 LRRTM2O43300 516 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 CD9P21926 228 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 CYLC1P35663 651 aaPredicted RBP13.22□□□□□ -0.29
CXCL12-202ENST00000374426 CETN2P41208 172 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 GRIA3P42263 894 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 TSFMP43897 325 aaKnown RBP13.22□□□□□ -0.29
CXCL12-202ENST00000374426 P3H1Q32P28 736 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 FCRL6Q6DN72 434 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 SHISA6Q6ZSJ9 500 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 LRRC57Q8N9N7 239 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 OR52K1Q8NGK4 314 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 DNAJB14Q8TBM8 379 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 DENND1AQ8TEH3 1009 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 HDAC10Q969S8 669 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 ZNF285Q96NJ3 590 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 IL17FQ96PD4 163 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 MRM3Q9HC36 420 aaKnown RBP13.22□□□□□ -0.29
CXCL12-202ENST00000374426 ENAMQ9NRM1 1142 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 CUTCQ9NTM9 273 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 SLC2A6Q9UGQ3 507 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 R3HDM2Q9Y2K5 976 aaKnown RBP13.22□□□□□ -0.29
CXCL12-202ENST00000374426 FBN2P35556 2912 aa13.22□□□□□ -0.29
CXCL12-202ENST00000374426 TACC2O95359 2948 aa13.21□□□□□ -0.29
CXCL12-202ENST00000374426 GRID2IPA4D2P6 1211 aa13.21□□□□□ -0.29
CXCL12-202ENST00000374426 GPC4O75487 556 aa13.21□□□□□ -0.29
CXCL12-202ENST00000374426 S1PR4O95977 384 aa13.21□□□□□ -0.29
CXCL12-202ENST00000374426 GOT2P00505 430 aaKnown RBP13.21□□□□□ -0.29
CXCL12-202ENST00000374426 PIM1P11309 404 aaPredicted RBP13.21□□□□□ -0.29
CXCL12-202ENST00000374426 TNFRSF8P28908 595 aa13.21□□□□□ -0.29
CXCL12-202ENST00000374426 NAP1L1P55209 391 aaKnown RBP13.21□□□□□ -0.29
CXCL12-202ENST00000374426 HSPA14Q0VDF9 509 aa13.21□□□□□ -0.29
CXCL12-202ENST00000374426 Q0VFX4 171 aa13.21□□□□□ -0.29
CXCL12-202ENST00000374426 KLF1Q13351 362 aaPredicted RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms