RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 INTS11Q5TA45 600 aaKnown RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 LRFN4Q6PJG9 635 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 TMEM25Q86YD3 366 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 BATF2Q8N1L9 274 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 CDH19Q9H159 772 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 ITM2CQ9NQX7 267 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 C14orf105Q9NVL8 296 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 TNPO3Q9Y5L0 923 aaKnown RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 VARSP26640 1264 aaKnown RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 ACSL1P33121 698 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 OAZ1P54368 228 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 LINGO2Q7L985 606 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 TTC9BQ8N6N2 239 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 HPS1Q92902 700 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 FUBP3Q96I24 572 aaKnown RBP eCLIP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 CPEB1Q9BZB8 566 aaKnown RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 IFT80Q9P2H3 777 aaPredicted RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 CA5BQ9Y2D0 317 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 C2orf72A6NCS6 295 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 ZNF879B4DU55 563 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 ITGA5P08648 1049 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 SLC1A2P43004 574 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 GALNT1Q10472 559 aaPredicted RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 C18orf21Q32NC0 220 aaPredicted RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 CDKAL1Q5VV42 579 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 TMEM198Q66K66 360 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 GPR153Q6NV75 609 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 TP53INP2Q8IXH6 220 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 MEIOBQ8N635 442 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 PEX11GQ96HA9 241 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 SLC35G5Q96KT7 338 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 RDH14Q9HBH5 336 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 A0A1B0GVM2 712 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 hCG_1807616A0A1W2PRN6 198 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 TCAF2A6NFQ2 919 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 B3GALT2O43825 422 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 MAGEC1O60732 1142 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 TNFRSF1BP20333 461 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 CFL1P23528 166 aaKnown RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 DGUOKQ16854 277 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 LSM12Q3MHD2 195 aaKnown RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 KATNAL2Q8IYT4 538 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 CD101Q93033 1021 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 TMEM74Q96NL1 305 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 PHOX2BQ99453 314 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 SPAG4Q9NPE6 437 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 ZNF224Q9NZL3 707 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 IFT52Q9Y366 437 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 HBS1LQ9Y450 684 aaKnown RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 CXorf49A8MYA2 514 aaPredicted RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 LASP1Q14847 261 aaKnown RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 PPA1Q15181 289 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 SIRPB2Q5JXA9 342 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 APCDD1Q8J025 514 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 PDLIM2Q96JY6 352 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 RDH12Q96NR8 316 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 ZCCHC3Q9NUD5 404 aaKnown RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 SRRDQ9UH36 339 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 FBXW11Q9UKB1 542 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 DHRS7Q9Y394 339 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 PDPK1O15530 556 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 NRG3P56975 720 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 PITX1P78337 314 aaPredicted RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 C6orf132Q5T0Z8 1188 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 OR7A2PQ8NGA2 310 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 RMND5BQ96G75 393 aaPredicted RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 HEBP2Q9Y5Z4 205 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 AGTR2P50052 363 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 FOLH1Q04609 750 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 REP15Q6BDI9 236 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 STRADAQ7RTN6 431 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 ZCCHC9Q8N567 271 aaKnown RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 EIF1ADQ8N9N8 165 aaKnown RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 HEXDCQ8WVB3 486 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 C11orf84Q9BUA3 381 aaPredicted RBP7.2□□□□□ -1.26
VPS13A-202ENST00000357409 SDCBP2Q9H190 292 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 SLCO3A1Q9UIG8 710 aa7.2□□□□□ -1.26
VPS13A-202ENST00000357409 C13orf42A0A1B0GVH6 325 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 IGLON5A6NGN9 336 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 CAPN8A6NHC0 703 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 TMEM150CB9EJG8 249 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 OR1I1O60431 355 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 ANXA2P07355 339 aaKnown RBP7.19□□□□□ -1.26
VPS13A-202ENST00000357409 JAK1P23458 1154 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 ARHGDIBP52566 201 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 OR2B6P58173 313 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 SLC9A4Q6AI14 798 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 TTC27Q6P3X3 843 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 AHSA2Q719I0 299 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 C1orf52Q8N6N3 182 aaKnown RBP7.19□□□□□ -1.26
VPS13A-202ENST00000357409 VGLL2Q8N8G2 317 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 KLHDC7BQ96G42 594 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 CHID1Q9BWS9 393 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 HINT2Q9BX68 163 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 C5AR2Q9P296 337 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 WDR53Q7Z5U6 358 aaPredicted RBP7.19□□□□□ -1.26
VPS13A-202ENST00000357409 C11orf65Q8NCR3 313 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 EBF4Q9BQW3 602 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 NPIPA5A0A0B4J1W7 369 aa7.19□□□□□ -1.26
VPS13A-202ENST00000357409 NPIPA7E9PJI5 369 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms