RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 FCRL6Q6DN72 434 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 SPNS3Q6ZMD2 512 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 Q6ZVL8 140 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 KRT77Q7Z794 578 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 GPR137CQ8N3F9 429 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 CISD2Q8N5K1 135 aaKnown RBP8.21□□□□□ -1.1
HMGB1-203ENST00000341423 GALNT6Q8NCL4 622 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 OR52L1Q8NGH7 329 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 SHISA4Q96DD7 197 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 TWNKQ96RR1 684 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 EGLN1Q9GZT9 426 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 MS4A12Q9NXJ0 267 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 DKK3Q9UBP4 350 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 FMN2Q9NZ56 1722 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 ANKRD61A6NGH8 418 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 TCP11X1B4DZS4 312 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 SOCS5O75159 536 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 GZMAP12544 262 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 GP1BBP13224 206 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 RFC1P35251 1148 aaPredicted RBP8.2□□□□□ -1.1
HMGB1-203ENST00000341423 FEN1P39748 380 aaKnown RBP8.2□□□□□ -1.1
HMGB1-203ENST00000341423 CBX5P45973 191 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 HTRA4P83105 476 aaPredicted RBP8.2□□□□□ -1.1
HMGB1-203ENST00000341423 VLDLRP98155 873 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 CDKAL1Q5VV42 579 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 PRAMEF13Q5VWM6 474 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 FAM91A1Q658Y4 838 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 MED27Q6P2C8 311 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 PDZD3Q86UT5 571 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 NUDCD3Q8IVD9 361 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 SLC22A15Q8IZD6 547 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 GUCD1Q96NT3 240 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 SH3GL1Q99961 368 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 DPH1Q9BZG8 443 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 C6orf106Q9H6K1 298 aaPredicted RBP8.2□□□□□ -1.1
HMGB1-203ENST00000341423 CCNB1IP1Q9NPC3 277 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 THAP10Q9P2Z0 257 aaPredicted RBP8.2□□□□□ -1.1
HMGB1-203ENST00000341423 LRP5O75197 1615 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 FAM220BPB1ANY3 271 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 ZNF208O43345 1280 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 ERI3O43414 337 aaKnown RBP8.2□□□□□ -1.1
HMGB1-203ENST00000341423 STC2O76061 302 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 AHSA1O95433 338 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 WNT11O96014 354 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 C8orf89P0DMQ9 161 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 NUP62P37198 522 aaPredicted RBP8.2□□□□□ -1.1
HMGB1-203ENST00000341423 AGTR2P50052 363 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 ZNF84P51523 738 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 ABATP80404 500 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 TMEM225Q6GV28 225 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 SYDE1Q6ZW31 735 aaPredicted RBP8.2□□□□□ -1.1
HMGB1-203ENST00000341423 OR5T3Q8NGG3 340 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 FAM162AQ96A26 154 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 BOD1Q96IK1 185 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 EPYCQ99645 322 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 ECSITQ9BQ95 431 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 DECR2Q9NUI1 292 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 C14orf105Q9NVL8 296 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 GDAP2Q9NXN4 497 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 ZNF624Q9P2J8 865 aaPredicted RBP8.2□□□□□ -1.1
HMGB1-203ENST00000341423 A0A087WUV0 522 aaPredicted RBP8.2□□□□□ -1.1
HMGB1-203ENST00000341423 DIAPH2O60879 1101 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 SERPINA1P01009 418 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 MIPP30301 263 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 STK19P49842 368 aaPredicted RBP8.2□□□□□ -1.1
HMGB1-203ENST00000341423 SIRPAP78324 504 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 BTN3A2P78410 334 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 SIX1Q15475 284 aaPredicted RBP8.2□□□□□ -1.1
HMGB1-203ENST00000341423 C2CD6Q53TS8 623 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 PLEKHM3Q6ZWE6 761 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 STK32AQ8WU08 396 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 CENPTQ96BT3 561 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 POT1Q9NUX5 634 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 BTNL10A8MVZ5 291 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 PIGNO95427 931 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 SERPINA3P01011 423 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 GNAZP19086 355 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 AHCYP23526 432 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 GALCP54803 685 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 DNAJC3Q13217 504 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 HEPACAMQ14CZ8 416 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 EXT1Q16394 746 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 PARP6Q2NL67 630 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 TRMT5Q32P41 509 aaKnown RBP8.2□□□□□ -1.1
HMGB1-203ENST00000341423 ARHGAP17Q68EM7 881 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 FJX1Q86VR8 437 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 WFDC8Q8IUA0 241 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 TMIEQ8NEW7 156 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 OR11L1Q8NGX0 322 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 RAB39BQ96DA2 213 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 FAXDC2Q96IV6 333 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 APOLD1Q96LR9 279 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 RHOBTB2Q9BYZ6 727 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 IL22Q9GZX6 179 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 BRF2Q9HAW0 419 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 SNX15Q9NRS6 342 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 CPNE7Q9UBL6 633 aa8.2□□□□□ -1.1
HMGB1-203ENST00000341423 PMS2P1A4D2B8 440 aa8.19□□□□□ -1.1
HMGB1-203ENST00000341423 E9PBE3 544 aa8.19□□□□□ -1.1
HMGB1-203ENST00000341423 PPEF2O14830 753 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms