RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TGM4P49221 684 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 AIF1P55008 147 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 DEFA1P59665 94 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 DEFA3P59666 94 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 RPL38P63173 70 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 RPP38P78345 283 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 SPANXN2Q5MJ10 180 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 GPR153Q6NV75 609 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 TUBA3EQ6PEY2 450 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 ZNF517Q6ZMY9 492 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 VTCN1Q7Z7D3 282 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 HIPK1Q86Z02 1210 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 TRIM48Q8IWZ4 208 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 SCAMP5Q8TAC9 235 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 FCRL2Q96LA5 508 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 TRNT1Q96Q11 434 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 OR2A14Q96R47 310 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 FARSBQ9NSD9 589 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 CRNNQ9UBG3 495 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 CA5AP35218 305 aa13.15□□□□□ -0.31
CCDC88C-201ENST00000331194 SLC26A3P40879 764 aa13.15□□□□□ -0.31
CCDC88C-201ENST00000331194 HMGCS1Q01581 520 aa13.15□□□□□ -0.31
CCDC88C-201ENST00000331194 PRKCDQ05655 676 aa13.15□□□□□ -0.31
CCDC88C-201ENST00000331194 GPR50Q13585 617 aa13.15□□□□□ -0.31
CCDC88C-201ENST00000331194 KYAT1Q16773 422 aa13.15□□□□□ -0.31
CCDC88C-201ENST00000331194 FAM171A1Q5VUB5 890 aa13.15□□□□□ -0.31
CCDC88C-201ENST00000331194 ENTHD1Q8IYW4 607 aa13.15□□□□□ -0.31
CCDC88C-201ENST00000331194 LINC01465Q8N7H1 131 aa13.15□□□□□ -0.31
CCDC88C-201ENST00000331194 GLB1L3Q8NCI6 653 aaPredicted RBP13.15□□□□□ -0.31
CCDC88C-201ENST00000331194 OR5H6Q8NGV6 325 aa13.15□□□□□ -0.31
CCDC88C-201ENST00000331194 RHEBL1Q8TAI7 183 aa13.15□□□□□ -0.31
CCDC88C-201ENST00000331194 SP110Q9HB58 689 aa13.15□□□□□ -0.31
CCDC88C-201ENST00000331194 SARS2Q9NP81 518 aaKnown RBP13.15□□□□□ -0.31
CCDC88C-201ENST00000331194 TOR4AQ9NXH8 423 aa13.15□□□□□ -0.31
CCDC88C-201ENST00000331194 UBQLN1Q9UMX0 589 aaKnown RBP13.15□□□□□ -0.31
CCDC88C-201ENST00000331194 ARNTLO00327 626 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 ARHGAP33O14559 1287 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 NPPAP01160 153 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 SERPINF2P08697 491 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 SNRPD2P62316 118 aaKnown RBP13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 IL18R1Q13478 541 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 KCTD2Q14681 263 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 ARHGEF6Q15052 776 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 KIAA0040Q15053 153 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 ALKAL1Q6UXT8 129 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 LBX2Q6XYB7 198 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 NLRP8Q86W28 1048 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 CCDC117Q8IWD4 279 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 ATG16L2Q8NAA4 619 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 ARRDC4Q8NCT1 418 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 OR8J3Q8NGG0 315 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 RNF170Q96K19 258 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 CCDC115Q96NT0 180 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 AARSD1Q9BTE6 412 aaKnown RBP13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 TTPALQ9BTX7 342 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 COQ3Q9NZJ6 369 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 CD274Q9NZQ7 290 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 ZNF236Q9UL36 1845 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 MEIOCA2RUB1 952 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 C12orf71A8MTZ7 269 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 RGS5O15539 181 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 SLC10A3P09131 477 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 CYP2A7P20853 494 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 DOC2BQ14184 412 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 BAK1Q16611 211 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 ZNF648Q5T619 568 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 ERAP2Q6P179 960 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 SHQ1Q6PI26 577 aaKnown RBP13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 PYURFQ96I23 114 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 ZFP42Q96MM3 310 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 KCNC2Q96PR1 638 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 APOL4Q9BPW4 351 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 SPATC1LQ9H0A9 340 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 TMEM39AQ9NV64 488 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 GPR83Q9NYM4 423 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 NDRG4Q9ULP0 352 aaKnown RBP13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 SPEF1Q9Y4P9 236 aa13.14□□□□□ -0.31
CCDC88C-201ENST00000331194 E2F3O00716 465 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 PTHP01270 115 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 STSP08842 583 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 UGT2B10P36537 528 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 FAM189BP81408 668 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 SLC14A1Q13336 389 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 KDM4DQ6B0I6 523 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 SLC27A1Q6PCB7 646 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 EFL1Q7Z2Z2 1120 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 GPR149Q86SP6 731 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 SIDT2Q8NBJ9 832 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 EEF1AKMT1Q8WVE0 214 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 IMP4Q96G21 291 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 GDF15Q99988 308 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 SLC25A51Q9H1U9 297 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 AGO3Q9H9G7 860 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 TIGARQ9NQ88 270 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 EVPLLA8MZ36 301 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 OR1I1O60431 355 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 SCO1O75880 301 aa13.13□□□□□ -0.31
CCDC88C-201ENST00000331194 CSF2P04141 144 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms