RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 CTRB1P17538 263 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 GSTM3P21266 225 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 PPOXP50336 477 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 SNRPD2P62316 118 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 RAC1P63000 192 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 PTPRRQ15256 657 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 SAPCD1Q5SSQ6 148 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 CTRB2Q6GPI1 263 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ARL9Q6T311 187 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 AMIGO2Q86SJ2 522 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 CMIPQ8IY22 773 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 RAB8BQ92930 207 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 RSPRY1Q96DX4 576 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 SLC47A1Q96FL8 570 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF577Q9BSK1 485 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 PLA2G4CQ9UP65 541 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ADGRL2O95490 1459 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 A0A1W2PRB8 838 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 G3V3Y1 287 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ITM2AO43736 263 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 PLA2G6O60733 806 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 CAMTA2O94983 1202 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 PROCP04070 461 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 CDK1P06493 297 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 SLC25A6P12236 298 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 CDH1P12830 882 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 UGT2B7P16662 529 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ITPK1Q13572 414 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 RFTN1Q14699 578 aaPredicted RBP7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 TRAM2Q15035 370 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 PFKFB4Q16877 469 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 NRROSQ86YC3 692 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 Q8N402 240 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ARL6IP6Q8N6S5 226 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 LMX1AQ8TE12 382 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 FOXRED1Q96CU9 486 aaPredicted RBP7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF599Q96NL3 588 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 HES7Q9BYE0 225 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 HES4Q9HCC6 221 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 FKBPLQ9UIM3 349 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 U3KQV3 271 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 TRPM1Q7Z4N2 1603 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 PNPLA7Q6ZV29 1317 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 TEX13CA0A0J9YWL9 993 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 KNG1P01042 644 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 COL6A1P12109 1028 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 CPN1P15169 458 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 EPHA1P21709 976 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 DNAJB2P25686 324 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 UQCRFS1P47985 274 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 SLC6A9P48067 706 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 THBS3P49746 956 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 NPRL3Q12980 569 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 SLC1A5Q15758 541 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF423Q2M1K9 1284 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 SLC39A4Q6P5W5 647 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 GCNT7Q6ZNI0 430 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 MOB2Q70IA6 237 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 MAMDC2Q7Z304 686 aaPredicted RBP7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 TSPAN33Q86UF1 283 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 CD302Q8IX05 232 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 UBQLNLQ8IYU4 475 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 MCOLN2Q8IZK6 566 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 MRPL50Q8N5N7 158 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 L3MBTL4Q8NA19 623 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ACSBG1Q96GR2 724 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF514Q96K75 400 aaPredicted RBP7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 MXD3Q9BW11 206 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ARL6Q9H0F7 186 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 TAS2R7Q9NYW3 318 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 FBXO10Q9UK96 956 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 VANGL2Q9ULK5 521 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ATG4BQ9Y4P1 393 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 PCDHB5Q9Y5E4 795 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 UTYO14607 1347 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 TDRD9Q8NDG6 1382 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ABCA10Q8WWZ4 1543 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 A0A088AWK7 358 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 PRICKLE3O43900 615 aaPredicted RBP7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 AIREO43918 545 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 GSTT2P0CG29 244 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 CYP2A6P11509 494 aaPredicted RBP7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ADRA2BP18089 450 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 SERPINA2P20848 420 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 EPHA3P29320 983 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 MTX3Q5HYI7 312 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF311Q5JNZ3 666 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ASCC1Q8N9N2 400 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 OVCA2Q8WZ82 227 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ISOC1Q96CN7 298 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 DPEP3Q9H4B8 488 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 RRAGCQ9HB90 399 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 ZBTB26Q9HCK0 441 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 DBF4Q9UBU7 674 aaPredicted RBP7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 H7BYZ3 331 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 KCNK2O95069 426 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 CSTBP04080 98 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 SAGP10523 405 aaPredicted RBP7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 GLP1RP43220 463 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 SULT1A1P50225 295 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms