RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 KIFC1Q9BW19 673 aa18.8■□□□□ 0.6
LIME1-201ENST00000309546 CHRNA10Q9GZZ6 450 aa18.8■□□□□ 0.6
LIME1-201ENST00000309546 MRM3Q9HC36 420 aaKnown RBP18.8■□□□□ 0.6
LIME1-201ENST00000309546 DHCR7Q9UBM7 475 aaKnown RBP18.8■□□□□ 0.6
LIME1-201ENST00000309546 SOX13Q9UN79 622 aa18.8■□□□□ 0.6
LIME1-201ENST00000309546 PLCL2Q9UPR0 1127 aa18.8■□□□□ 0.6
LIME1-201ENST00000309546 FLNBO75369 2602 aaKnown RBP18.79■□□□□ 0.6
LIME1-201ENST00000309546 H3BMH7 237 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 RASGRF2O14827 1237 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 ARNTP27540 789 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 FMO4P31512 558 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 MLLT10P55197 1068 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 CDK16Q00536 496 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 ATP1A4Q13733 1029 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 GRB7Q14451 532 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 KCNJ11Q14654 390 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 CTSL3PQ5NE16 218 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 MRNIPQ6NTE8 343 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 RHBDD2Q6NTF9 364 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 CASC4Q6P4E1 433 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 TTC23LQ6PF05 361 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 CNSTQ6PJW8 725 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 SDCCAG8Q86SQ7 713 aaPredicted RBP18.79■□□□□ 0.6
LIME1-201ENST00000309546 DNAJC22Q8N4W6 341 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 ZBTB2Q8N680 514 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 OR2L8Q8NGY9 312 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 PROKR1Q8TCW9 393 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 SLC22A18Q96BI1 424 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 FAM136AQ96C01 138 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 C17orf62Q9BQA9 187 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 NDC1Q9BTX1 674 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 DHRS4Q9BTZ2 278 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 MENTQ9BUN1 341 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 NDOR1Q9UHB4 597 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 SRPK3Q9UPE1 567 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 PLAAQ9Y263 795 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 NFS1Q9Y697 457 aa18.79■□□□□ 0.6
LIME1-201ENST00000309546 PCSK5Q92824 1860 aa18.78■□□□□ 0.6
LIME1-201ENST00000309546 KRT87PA6NCN2 255 aa18.78■□□□□ 0.6
LIME1-201ENST00000309546 KPNA5O15131 536 aa18.78■□□□□ 0.6
LIME1-201ENST00000309546 ZNF185O15231 689 aa18.78■□□□□ 0.6
LIME1-201ENST00000309546 NIPSNAP2O75323 286 aa18.78■□□□□ 0.6
LIME1-201ENST00000309546 AVILO75366 819 aa18.78■□□□□ 0.6
LIME1-201ENST00000309546 S1PR4O95977 384 aa18.78■□□□□ 0.6
LIME1-201ENST00000309546 KRT14P02533 472 aa18.78■□□□□ 0.6
LIME1-201ENST00000309546 DCDP81605 110 aaKnown RBP18.78■□□□□ 0.6
LIME1-201ENST00000309546 SARNPP82979 210 aaKnown RBP18.78■□□□□ 0.6
LIME1-201ENST00000309546 SF1Q15637 639 aaKnown RBP18.78■□□□□ 0.6
LIME1-201ENST00000309546 TLDC1Q6P9B6 456 aa18.78■□□□□ 0.6
LIME1-201ENST00000309546 FOPNLQ96NB1 174 aa18.78■□□□□ 0.6
LIME1-201ENST00000309546 GBP5Q96PP8 586 aa18.78■□□□□ 0.6
LIME1-201ENST00000309546 RAB11FIP5Q9BXF6 653 aa18.78■□□□□ 0.6
LIME1-201ENST00000309546 INTS7Q9NVH2 962 aaKnown RBP18.78■□□□□ 0.6
LIME1-201ENST00000309546 EURLQ9NYK6 297 aa18.78■□□□□ 0.6
LIME1-201ENST00000309546 IFT80Q9P2H3 777 aaPredicted RBP18.78■□□□□ 0.6
LIME1-201ENST00000309546 G3BP2Q9UN86 482 aaKnown RBP18.78■□□□□ 0.6
LIME1-201ENST00000309546 PTRH2Q9Y3E5 179 aaKnown RBP18.78■□□□□ 0.6
LIME1-201ENST00000309546 PCDHGA9Q9Y5G4 932 aaKnown RBP18.78■□□□□ 0.6
LIME1-201ENST00000309546 A6NL46 340 aa18.77■□□□□ 0.6
LIME1-201ENST00000309546 PFDN6O15212 129 aa18.77■□□□□ 0.6
LIME1-201ENST00000309546 FOLR3P41439 243 aa18.77■□□□□ 0.6
LIME1-201ENST00000309546 CCSMST1Q4G0I0 132 aa18.77■□□□□ 0.6
LIME1-201ENST00000309546 RNF187Q5TA31 235 aaPredicted RBP18.77■□□□□ 0.6
LIME1-201ENST00000309546 ANKRD22Q5VYY1 191 aa18.77■□□□□ 0.6
LIME1-201ENST00000309546 KIAA0930Q6ICG6 404 aaPredicted RBP18.77■□□□□ 0.6
LIME1-201ENST00000309546 TTC27Q6P3X3 843 aa18.77■□□□□ 0.6
LIME1-201ENST00000309546 RAB42Q8N4Z0 105 aa18.77■□□□□ 0.6
LIME1-201ENST00000309546 TMEM102Q8N9M5 508 aaPredicted RBP18.77■□□□□ 0.6
LIME1-201ENST00000309546 LPGAT1Q92604 370 aa18.77■□□□□ 0.6
LIME1-201ENST00000309546 MAGOHBQ96A72 148 aaKnown RBP18.77■□□□□ 0.6
LIME1-201ENST00000309546 RAD51AP1Q96B01 352 aa18.77■□□□□ 0.6
LIME1-201ENST00000309546 MS4A14Q96JA4 679 aa18.77■□□□□ 0.6
LIME1-201ENST00000309546 IL1RAPL1Q9NZN1 696 aa18.77■□□□□ 0.6
LIME1-201ENST00000309546 SAMD15Q9P1V8 674 aa18.77■□□□□ 0.6
LIME1-201ENST00000309546 CRYL1Q9Y2S2 319 aa18.77■□□□□ 0.6
LIME1-201ENST00000309546 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.76■□□□□ 0.59
LIME1-201ENST00000309546 C1orf105O95561 183 aa18.76■□□□□ 0.59
LIME1-201ENST00000309546 PAMP19021 973 aa18.76■□□□□ 0.59
LIME1-201ENST00000309546 ALAS2P22557 587 aa18.76■□□□□ 0.59
LIME1-201ENST00000309546 PSMB5P28074 263 aa18.76■□□□□ 0.59
LIME1-201ENST00000309546 GRIA3P42263 894 aa18.76■□□□□ 0.59
LIME1-201ENST00000309546 RRADP55042 308 aa18.76■□□□□ 0.59
LIME1-201ENST00000309546 RAPSNQ13702 412 aa18.76■□□□□ 0.59
LIME1-201ENST00000309546 TYSND1Q2T9J0 566 aa18.76■□□□□ 0.59
LIME1-201ENST00000309546 NADK2Q4G0N4 442 aa18.76■□□□□ 0.59
LIME1-201ENST00000309546 MED25Q71SY5 747 aa18.76■□□□□ 0.59
LIME1-201ENST00000309546 MRGPREQ86SM8 312 aa18.76■□□□□ 0.59
LIME1-201ENST00000309546 MCATQ8IVS2 390 aaKnown RBP18.76■□□□□ 0.59
LIME1-201ENST00000309546 FDCSPQ8NFU4 85 aa18.76■□□□□ 0.59
LIME1-201ENST00000309546 ZNF669Q96BR6 464 aaPredicted RBP18.76■□□□□ 0.59
LIME1-201ENST00000309546 BIRC8Q96P09 236 aa18.76■□□□□ 0.59
LIME1-201ENST00000309546 TRIM56Q9BRZ2 755 aaKnown RBP18.76■□□□□ 0.59
LIME1-201ENST00000309546 MRFAP1Q9Y605 127 aa18.76■□□□□ 0.59
LIME1-201ENST00000309546 SPENQ96T58 3664 aaKnown RBP18.75■□□□□ 0.59
LIME1-201ENST00000309546 NBASA2RRP1 2371 aa18.75■□□□□ 0.59
LIME1-201ENST00000309546 UBR5O95071 2799 aaPredicted RBP18.75■□□□□ 0.59
LIME1-201ENST00000309546 GOLGA8MH3BSY2 632 aa18.75■□□□□ 0.59
LIME1-201ENST00000309546 KLF7O75840 302 aaPredicted RBP18.75■□□□□ 0.59
LIME1-201ENST00000309546 CHRM3P20309 590 aa18.75■□□□□ 0.59
LIME1-201ENST00000309546 OGNP20774 298 aaKnown RBP18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms