RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 ITPAQ9BY32 194 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 ADAMTS10Q9H324 1103 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 CCSER2Q9H7U1 834 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 TBC1D17Q9HA65 648 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 ZCWPW2A0A1B0GU75 182 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 G3V2L1 256 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 VILLO15195 856 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 GRID2O43424 1007 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 ERAL1O75616 437 aaKnown RBP11.31□□□□□ -0.6
VPS33A-201ENST00000267199 PCDH8O95206 1070 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 TCF3P15923 654 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 RFC2P35250 354 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 OR4D2P58180 307 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 OR2T5Q6IEZ7 315 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 CXorf57Q6NSI4 855 aaKnown RBP11.31□□□□□ -0.6
VPS33A-201ENST00000267199 ERICH5Q6P6B1 374 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 DCDC5Q6ZRR9 648 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 OR2T29Q8NH02 315 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 TMEM40Q8WWA1 233 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 PPCDCQ96CD2 204 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 TSGA13Q96PP4 275 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 SLC38A2Q96QD8 506 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 PHOX2BQ99453 314 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 LHPPQ9H008 270 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 PRAMEF33A0A0G2JMD5 474 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 KRBA1A5PL33 1030 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 MAGEB17A8MXT2 336 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 NME4O00746 187 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 PRAMEF10O60809 474 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 CPOXP36551 454 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 AGTR2P50052 363 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 C1QTNF8P60827 252 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 CRTC2Q53ET0 693 aaPredicted RBP11.31□□□□□ -0.6
VPS33A-201ENST00000267199 ZNF678Q5SXM1 525 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 ATAD3BQ5T9A4 648 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 FAM91A1Q658Y4 838 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 ARNTL2Q8WYA1 636 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 TP53INP1Q96A56 240 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 BARD1Q99728 777 aaKnown RBP11.31□□□□□ -0.6
VPS33A-201ENST00000267199 GINS4Q9BRT9 223 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 KRCC1Q9NPI7 259 aaPredicted RBP11.31□□□□□ -0.6
VPS33A-201ENST00000267199 EMCNQ9ULC0 261 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 RNF6Q9Y252 685 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 CFL2Q9Y281 166 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 RWDD3Q9Y3V2 267 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 DDX60LQ5H9U9 1706 aaKnown RBP11.31□□□□□ -0.6
VPS33A-201ENST00000267199 TRAV19A0A0A6YYK7 116 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 FAM172BPA6NC97 362 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 FADS2P1A8MWK0 482 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 PGRMC2O15173 223 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 PRG2P13727 222 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 GLDCP23378 1020 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 DNAJB1P25685 340 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 SPAM1P38567 509 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 DSC3Q14574 896 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 BICRALQ6AI39 1079 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 BHLHB9Q6PI77 547 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 IGFN1Q86VF2 1251 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 LAPTM4BQ86VI4 370 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 CLP1Q92989 425 aaKnown RBP11.31□□□□□ -0.6
VPS33A-201ENST00000267199 MTERF1Q99551 399 aaKnown RBP11.31□□□□□ -0.6
VPS33A-201ENST00000267199 PAAF1Q9BRP4 392 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 TMEM246Q9BRR3 403 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 ANKRD60Q9BZ19 345 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 RIMS3Q9UJD0 308 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 HSPB11Q9Y547 144 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 PCDHGA7Q9Y5G6 932 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 MAST2Q6P0Q8 1798 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 MYO10Q9HD67 2058 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 ADAMDEC1O15204 470 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 FFAR2O15552 330 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 SEPT4O43236 478 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 IFNGR2P38484 337 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 SP3Q02447 781 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 GRB14Q14449 540 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 TSTQ16762 297 aaKnown RBP11.3□□□□□ -0.6
VPS33A-201ENST00000267199 TECRLQ5HYJ1 363 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 CCBE1Q6UXH8 406 aaPredicted RBP11.3□□□□□ -0.6
VPS33A-201ENST00000267199 ANKFN1Q8N957 763 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 KDM1BQ8NB78 822 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 FCGR1BQ92637 280 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 HDAC2Q92769 488 aaKnown RBP11.3□□□□□ -0.6
VPS33A-201ENST00000267199 AASDHPPTQ9NRN7 309 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 DNAJC11Q9NVH1 559 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 PAK1IP1Q9NWT1 392 aaPredicted RBP11.3□□□□□ -0.6
VPS33A-201ENST00000267199 OAS3Q9Y6K5 1087 aaKnown RBP11.3□□□□□ -0.6
VPS33A-201ENST00000267199 C7orf72A4D263 438 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 PER2O15055 1255 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 CREG1O75629 220 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 CDK14O94921 469 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 ITGB1P05556 798 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 YES1P07947 543 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 ANXA4P09525 319 aaPredicted RBP11.3□□□□□ -0.6
VPS33A-201ENST00000267199 SDC2P34741 201 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 NR4A2P43354 598 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 ATP6AP1Q15904 470 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 MS4A13Q5J8X5 152 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 CES5AQ6NT32 575 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 RASSF6Q6ZTQ3 369 aa11.3□□□□□ -0.6
VPS33A-201ENST00000267199 LILRA2Q8N149 483 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms