RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 XKR6Q5GH73 641 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 KYQ8NBH2 561 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 ZDHHC5Q9C0B5 715 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 DNAJC11Q9NVH1 559 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 INVSQ9Y283 1065 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 POLR3HQ9Y535 204 aaPredicted RBP16.03■□□□□ 0.16
USP4-201ENST00000265560 TRBV23OR9-2A0A075B6M9 112 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 VEGFDO43915 354 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 MNAT1P51948 309 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 PTGR1Q14914 329 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 E2F5Q15329 346 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 ZRSR2Q15696 482 aaKnown RBP16.03■□□□□ 0.16
USP4-201ENST00000265560 RGL4Q8IZJ4 473 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 RTKNQ9BST9 563 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 TEX101Q9BY14 249 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 TPSD1Q9BZJ3 242 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 FOXQ1Q9C009 403 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 EBF2Q9HAK2 575 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 CACNA1IQ9P0X4 2223 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 OR52A4PA6NMU1 304 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 EIF3FO00303 357 aaPredicted RBP16.03■□□□□ 0.16
USP4-201ENST00000265560 MANBAO00462 879 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 LIN7AO14910 233 aaPredicted RBP16.03■□□□□ 0.16
USP4-201ENST00000265560 ENO2P09104 434 aaPredicted RBP16.03■□□□□ 0.16
USP4-201ENST00000265560 G6PDP11413 515 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 TDGQ13569 410 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 CATSPEREQ5SY80 951 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 IL23RQ5VWK5 629 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 MIER2Q8N344 545 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 UBTD2Q8WUN7 234 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 TFGQ92734 400 aaPredicted RBP16.03■□□□□ 0.16
USP4-201ENST00000265560 FGF22Q9HCT0 170 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 CYP8B1Q9UNU6 501 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 CHUKO15111 745 aa16.02■□□□□ 0.16
USP4-201ENST00000265560 CAPN3P20807 821 aa16.02■□□□□ 0.16
USP4-201ENST00000265560 TRIM23P36406 574 aa16.02■□□□□ 0.16
USP4-201ENST00000265560 GNPDA1P46926 289 aa16.02■□□□□ 0.16
USP4-201ENST00000265560 AP1S2P56377 157 aa16.02■□□□□ 0.16
USP4-201ENST00000265560 MRPS21P82921 87 aaKnown RBP16.02■□□□□ 0.16
USP4-201ENST00000265560 IRF8Q02556 426 aa16.02■□□□□ 0.16
USP4-201ENST00000265560 IMPG1Q17R60 797 aa16.02■□□□□ 0.16
USP4-201ENST00000265560 THEMIS2Q5TEJ8 643 aa16.02■□□□□ 0.16
USP4-201ENST00000265560 C1orf146Q5VVC0 180 aa16.02■□□□□ 0.16
USP4-201ENST00000265560 RETREG3Q86VR2 466 aa16.02■□□□□ 0.16
USP4-201ENST00000265560 SELENOMQ8WWX9 145 aa16.02■□□□□ 0.16
USP4-201ENST00000265560 JPH3Q8WXH2 748 aaPredicted RBP16.02■□□□□ 0.16
USP4-201ENST00000265560 TSACCQ96A04 125 aaPredicted RBP16.02■□□□□ 0.16
USP4-201ENST00000265560 HHIPQ96QV1 700 aa16.02■□□□□ 0.16
USP4-201ENST00000265560 NUSAP1Q9BXS6 441 aaKnown RBP16.02■□□□□ 0.16
USP4-201ENST00000265560 OR52A5Q9H2C5 316 aa16.02■□□□□ 0.16
USP4-201ENST00000265560 PHPT1Q9NRX4 125 aaPredicted RBP16.02■□□□□ 0.16
USP4-201ENST00000265560 SUFUQ9UMX1 484 aa16.02■□□□□ 0.16
USP4-201ENST00000265560 GPR34Q9UPC5 381 aa16.02■□□□□ 0.16
USP4-201ENST00000265560 NCKAP1Q9Y2A7 1128 aa16.02■□□□□ 0.16
USP4-201ENST00000265560 SNRNP200O75643 2136 aaKnown RBP16.02■□□□□ 0.16
USP4-201ENST00000265560 LSM1O15116 133 aaKnown RBP16.02■□□□□ 0.15
USP4-201ENST00000265560 SEC22BO75396 215 aa16.02■□□□□ 0.15
USP4-201ENST00000265560 RSL1D1O76021 490 aaKnown RBP16.02■□□□□ 0.15
USP4-201ENST00000265560 CEACAM5P06731 702 aa16.02■□□□□ 0.15
USP4-201ENST00000265560 SNRPB2P08579 225 aaKnown RBP16.02■□□□□ 0.15
USP4-201ENST00000265560 HNMTP50135 292 aa16.02■□□□□ 0.15
USP4-201ENST00000265560 SESN3P58005 492 aa16.02■□□□□ 0.15
USP4-201ENST00000265560 SP140Q13342 867 aa16.02■□□□□ 0.15
USP4-201ENST00000265560 PTK2BQ14289 1009 aa16.02■□□□□ 0.15
USP4-201ENST00000265560 GAS6Q14393 721 aa16.02■□□□□ 0.15
USP4-201ENST00000265560 UBXN2BQ14CS0 331 aa16.02■□□□□ 0.15
USP4-201ENST00000265560 SMAD2Q15796 467 aaKnown RBP16.02■□□□□ 0.15
USP4-201ENST00000265560 DNAL1Q4LDG9 190 aa16.02■□□□□ 0.15
USP4-201ENST00000265560 NEIL2Q969S2 332 aa16.02■□□□□ 0.15
USP4-201ENST00000265560 NTMT1Q9BV86 223 aa16.02■□□□□ 0.15
USP4-201ENST00000265560 ELOVL6Q9H5J4 265 aa16.02■□□□□ 0.15
USP4-201ENST00000265560 EPHX3Q9H6B9 360 aa16.02■□□□□ 0.15
USP4-201ENST00000265560 WDR41Q9HAD4 459 aa16.02■□□□□ 0.15
USP4-201ENST00000265560 EFCAB1Q9HAE3 211 aa16.02■□□□□ 0.15
USP4-201ENST00000265560 GPR45Q9Y5Y3 372 aa16.02■□□□□ 0.15
USP4-201ENST00000265560 TBPL1P62380 186 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 CAPRIN1Q14444 709 aaKnown RBP16.01■□□□□ 0.15
USP4-201ENST00000265560 SNCBQ16143 134 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 REP15Q6BDI9 236 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 NEK10Q6ZWH5 1172 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 HM13Q8TCT9 377 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 CCDC138Q96M89 665 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 APOOQ9BUR5 198 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 IMP3Q9NV31 184 aaKnown RBP16.01■□□□□ 0.15
USP4-201ENST00000265560 SLAMF8Q9P0V8 285 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 COL4A2P08572 1712 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 KRT36O76013 467 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 EBLN1P0CF75 366 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 ACADLP28330 430 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 IL12AP29459 219 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 FAM20CQ8IXL6 584 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 CCL4L1Q8NHW4 92 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 DNASE1L2Q92874 299 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 GFM2Q969S9 779 aaKnown RBP16.01■□□□□ 0.15
USP4-201ENST00000265560 FBXL8Q96CD0 374 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 PDXPQ96GD0 296 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 ZNF514Q96K75 400 aaPredicted RBP16.01■□□□□ 0.15
USP4-201ENST00000265560 MRPL1Q9BYD6 325 aaKnown RBP16.01■□□□□ 0.15
USP4-201ENST00000265560 ACPTQ9BZG2 426 aa16.01■□□□□ 0.15
USP4-201ENST00000265560 C1orf21Q9H246 121 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms