RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 FAM58BPP0C7Q3 252 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 S100A5P33763 92 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 TMEM52BQ4KMG9 183 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 TCTE1Q5JU00 501 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 SDR16C5Q8N3Y7 309 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 FLCNQ8NFG4 579 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 SLC13A3Q8WWT9 602 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 STON2Q8WXE9 905 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 PDLIM5Q96HC4 596 aaKnown RBP13.33□□□□□ -0.28
LDLR-201ENST00000252444 C1orf21Q9H246 121 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 SDHAF3Q9NRP4 125 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 USE1Q9NZ43 259 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 ADAMDEC1O15204 470 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 AK1P00568 194 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 KRT8P05787 483 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 EPHA3P29320 983 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 PSPHP78330 225 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 SEMA3BQ13214 749 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 GOLGA7Q7Z5G4 137 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 TMEM25Q86YD3 366 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 PLD3Q8IV08 490 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 SLC44A2Q8IWA5 706 aaPredicted RBP13.33□□□□□ -0.28
LDLR-201ENST00000252444 ZNF527Q8NB42 609 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 ADCY4Q8NFM4 1077 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 SLC35G5Q96KT7 338 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 FNDC11Q9BVV2 318 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 TMEM184CQ9NVA4 438 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 ELOVL7A1L3X0 281 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 TTC34A8MYJ7 566 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 GTPBP1O00178 669 aaKnown RBP13.32□□□□□ -0.28
LDLR-201ENST00000252444 SLC28A2O43868 658 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 FOXD2O60548 495 aaPredicted RBP13.32□□□□□ -0.28
LDLR-201ENST00000252444 NR2C1P13056 603 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 CD1DP15813 335 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 CSNK2BP67870 215 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 TAS1R1Q7RTX1 841 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 MTERF3Q96E29 417 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 A0A1W2PPC1 479 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 MAGEB17A8MXT2 336 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 UGT2B11O75310 529 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 ZNF77Q15935 545 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 TECRLQ5HYJ1 363 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 PPM1JQ5JR12 505 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 CAMKK1Q8N5S9 505 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 NETO2Q8NC67 525 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 ZNF334Q9HCZ1 680 aaPredicted RBP13.32□□□□□ -0.28
LDLR-201ENST00000252444 FANCFQ9NPI8 374 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 THAP10Q9P2Z0 257 aaPredicted RBP13.32□□□□□ -0.28
LDLR-201ENST00000252444 PIP5K1BO14986 540 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 NUMBP49757 651 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 NRG3P56975 720 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 ZNF678Q5SXM1 525 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 REP15Q6BDI9 236 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 LIX1Q8N485 282 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.32□□□□□ -0.28
LDLR-201ENST00000252444 RCN3Q96D15 328 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 RBM18Q96H35 190 aaKnown RBP13.32□□□□□ -0.28
LDLR-201ENST00000252444 MYOCQ99972 504 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 DUSP26Q9BV47 211 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 PHF7Q9BWX1 381 aaPredicted RBP13.32□□□□□ -0.28
LDLR-201ENST00000252444 OSBPL11Q9BXB4 747 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 C14orf105Q9NVL8 296 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 SIRPGQ9P1W8 387 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 PNMA8BQ9ULN7 279 aaPredicted RBP13.32□□□□□ -0.28
LDLR-201ENST00000252444 DHRS12A0PJE2 317 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 HOXD9P28356 352 aaPredicted RBP13.32□□□□□ -0.28
LDLR-201ENST00000252444 SOX6P35712 828 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 MAGEA8P43361 318 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 CPNE8Q86YQ8 564 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 APCDD1Q8J025 514 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 NPWQ8N729 165 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 WDR48Q8TAF3 677 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 SLC47A1Q96FL8 570 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 DTD2Q96FN9 168 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 SMG9Q9H0W8 520 aaKnown RBP13.32□□□□□ -0.28
LDLR-201ENST00000252444 IL1RAPQ9NPH3 570 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 AQP12BA6NM10 295 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 IGLV3-25P01717 112 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 ZNF155Q12901 538 aaPredicted RBP13.32□□□□□ -0.28
LDLR-201ENST00000252444 CRTC1Q6UUV9 634 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 AQP12AQ8IXF9 295 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 C12orf76Q8N812 135 aaPredicted RBP13.32□□□□□ -0.28
LDLR-201ENST00000252444 RHBGQ9H310 441 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 RNPEPL1Q9HAU8 725 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 MTMR10Q9NXD2 777 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 IL17CQ9P0M4 197 aa13.32□□□□□ -0.28
LDLR-201ENST00000252444 TRIM43BA6NCK2 446 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 TK2O00142 265 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 BNIP1Q12981 228 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 ZNF234Q14588 700 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 HEATR4Q86WZ0 1026 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 TRIM43Q96BQ3 446 aaPredicted RBP13.31□□□□□ -0.28
LDLR-201ENST00000252444 VPS35Q96QK1 796 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 COPG1Q9Y678 874 aaKnown RBP13.31□□□□□ -0.28
LDLR-201ENST00000252444 CER1O95813 267 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 DRD2P14416 443 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 ZNF140P52738 457 aaPredicted RBP13.31□□□□□ -0.28
LDLR-201ENST00000252444 CDH13P55290 713 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 HTRA3P83110 453 aa13.31□□□□□ -0.28
LDLR-201ENST00000252444 RPL6Q02878 288 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms