RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 CT47B1P0C2W7 299 aaPredicted RBP9.47□□□□□ -0.89
VPS11-209ENST00000622309 TNNT1P13805 278 aa9.47□□□□□ -0.89
VPS11-209ENST00000622309 CARD10Q9BWT7 1032 aa9.47□□□□□ -0.89
VPS11-209ENST00000622309 CWC15Q9P013 229 aaKnown RBP9.47□□□□□ -0.89
VPS11-209ENST00000622309 SPC24Q8NBT2 197 aa9.47□□□□□ -0.89
VPS11-209ENST00000622309 MLH3Q9UHC1 1453 aa9.47□□□□□ -0.89
VPS11-209ENST00000622309 DIP2CQ9Y2E4 1556 aa9.47□□□□□ -0.89
VPS11-209ENST00000622309 GYS2P54840 703 aa9.46□□□□□ -0.89
VPS11-209ENST00000622309 BMS1Q14692 1282 aaKnown RBP9.46□□□□□ -0.89
VPS11-209ENST00000622309 KMT5BQ4FZB7 885 aa9.46□□□□□ -0.89
VPS11-209ENST00000622309 CT47A1Q5JQC4 288 aaPredicted RBP9.46□□□□□ -0.89
VPS11-209ENST00000622309 SYT10Q6XYQ8 523 aa9.46□□□□□ -0.89
VPS11-209ENST00000622309 LNPKQ9C0E8 428 aa9.46□□□□□ -0.89
VPS11-209ENST00000622309 IFT57Q9NWB7 429 aa9.46□□□□□ -0.89
VPS11-209ENST00000622309 KDM5DQ9BY66 1539 aa9.46□□□□□ -0.9
VPS11-209ENST00000622309 MYO1CO00159 1063 aa9.46□□□□□ -0.9
VPS11-209ENST00000622309 HTATSF1O43719 755 aaKnown RBP9.46□□□□□ -0.9
VPS11-209ENST00000622309 ADRA2BP18089 450 aa9.46□□□□□ -0.9
VPS11-209ENST00000622309 HDAC1Q13547 482 aaPredicted RBP9.46□□□□□ -0.9
VPS11-209ENST00000622309 KRBA2Q6ZNG9 492 aa9.46□□□□□ -0.9
VPS11-209ENST00000622309 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.46□□□□□ -0.9
VPS11-209ENST00000622309 AK9Q5TCS8 1911 aa9.46□□□□□ -0.9
VPS11-209ENST00000622309 ARID4AP29374 1257 aaPredicted RBP9.46□□□□□ -0.9
VPS11-209ENST00000622309 NOM1Q5C9Z4 860 aaKnown RBP9.46□□□□□ -0.9
VPS11-209ENST00000622309 GGT6Q6P531 493 aa9.46□□□□□ -0.9
VPS11-209ENST00000622309 CHAMP1Q96JM3 812 aa9.46□□□□□ -0.9
VPS11-209ENST00000622309 DEF6Q9H4E7 631 aa9.46□□□□□ -0.9
VPS11-209ENST00000622309 GPS2Q13227 327 aa9.45□□□□□ -0.9
VPS11-209ENST00000622309 EGFL6Q8IUX8 553 aa9.45□□□□□ -0.9
VPS11-209ENST00000622309 RTF1Q92541 710 aaKnown RBP9.45□□□□□ -0.9
VPS11-209ENST00000622309 DRC1Q96MC2 740 aa9.45□□□□□ -0.9
VPS11-209ENST00000622309 A2MP01023 1474 aa9.45□□□□□ -0.9
VPS11-209ENST00000622309 TRIM66O15016 1216 aa9.45□□□□□ -0.9
VPS11-209ENST00000622309 U2SURPO15042 1029 aaKnown RBP9.45□□□□□ -0.9
VPS11-209ENST00000622309 BMP2KLQ5H9B9 411 aa9.45□□□□□ -0.9
VPS11-209ENST00000622309 JRKLQ9Y4A0 524 aa9.45□□□□□ -0.9
VPS11-209ENST00000622309 HCLS1P14317 486 aaPredicted RBP9.44□□□□□ -0.9
VPS11-209ENST00000622309 DZIP1LQ8IYY4 767 aaKnown RBP9.44□□□□□ -0.9
VPS11-209ENST00000622309 CCDC191Q8NCU4 936 aa9.44□□□□□ -0.9
VPS11-209ENST00000622309 NEK11Q8NG66 645 aa9.44□□□□□ -0.9
VPS11-209ENST00000622309 KCNF1Q9H3M0 494 aa9.44□□□□□ -0.9
VPS11-209ENST00000622309 PRAG1Q86YV5 1406 aa9.44□□□□□ -0.9
VPS11-209ENST00000622309 DUOX2Q9NRD8 1548 aa9.44□□□□□ -0.9
VPS11-209ENST00000622309 CAMSAP1Q5T5Y3 1602 aa9.44□□□□□ -0.9
VPS11-209ENST00000622309 ST18O60284 1047 aa9.44□□□□□ -0.9
VPS11-209ENST00000622309 ABCC1P33527 1531 aa9.44□□□□□ -0.9
VPS11-209ENST00000622309 MUM1L1Q5H9M0 696 aa9.44□□□□□ -0.9
VPS11-209ENST00000622309 ZKSCAN2Q63HK3 967 aa9.44□□□□□ -0.9
VPS11-209ENST00000622309 ANKRD36BQ8N2N9 1353 aa9.44□□□□□ -0.9
VPS11-209ENST00000622309 TMF1P82094 1093 aa9.44□□□□□ -0.9
VPS11-209ENST00000622309 TBC1D9Q6ZT07 1266 aa9.44□□□□□ -0.9
VPS11-209ENST00000622309 ZGPATQ8N5A5 531 aaKnown RBP9.44□□□□□ -0.9
VPS11-209ENST00000622309 GTF3C6Q969F1 213 aa9.44□□□□□ -0.9
VPS11-209ENST00000622309 KIF1BPQ96EK5 621 aa9.44□□□□□ -0.9
VPS11-209ENST00000622309 POLKQ9UBT6 870 aa9.44□□□□□ -0.9
VPS11-209ENST00000622309 A0A1B0GUL7 405 aa9.43□□□□□ -0.9
VPS11-209ENST00000622309 RBM6P78332 1123 aaKnown RBP9.43□□□□□ -0.9
VPS11-209ENST00000622309 NEUROD2Q15784 382 aa9.43□□□□□ -0.9
VPS11-209ENST00000622309 TPD52L1Q16890 204 aaPredicted RBP9.43□□□□□ -0.9
VPS11-209ENST00000622309 FAM53CQ9NYF3 392 aa9.43□□□□□ -0.9
VPS11-209ENST00000622309 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.43□□□□□ -0.9
VPS11-209ENST00000622309 V9GYY5 206 aaPredicted RBP9.43□□□□□ -0.9
VPS11-209ENST00000622309 NPM3O75607 178 aaKnown RBP9.43□□□□□ -0.9
VPS11-209ENST00000622309 TPM4P67936 248 aa9.43□□□□□ -0.9
VPS11-209ENST00000622309 FBXO38Q6PIJ6 1188 aa9.43□□□□□ -0.9
VPS11-209ENST00000622309 ITPRIPQ8IWB1 547 aa9.43□□□□□ -0.9
VPS11-209ENST00000622309 ZDHHC9Q9Y397 364 aa9.43□□□□□ -0.9
VPS11-209ENST00000622309 LRRFIP2Q9Y608 721 aaKnown RBP9.43□□□□□ -0.9
VPS11-209ENST00000622309 MROH2AA6NES4 1674 aa9.43□□□□□ -0.9
VPS11-209ENST00000622309 ABCA6Q8N139 1617 aa9.42□□□□□ -0.9
VPS11-209ENST00000622309 POLR3GO15318 223 aaPredicted RBP9.42□□□□□ -0.9
VPS11-209ENST00000622309 SATB1Q01826 763 aa9.42□□□□□ -0.9
VPS11-209ENST00000622309 TTC31Q49AM3 519 aaPredicted RBP9.42□□□□□ -0.9
VPS11-209ENST00000622309 CEP120Q8N960 986 aa9.42□□□□□ -0.9
VPS11-209ENST00000622309 NUCB1Q02818 461 aa9.42□□□□□ -0.9
VPS11-209ENST00000622309 ZSCAN26Q16670 478 aa9.42□□□□□ -0.9
VPS11-209ENST00000622309 NUTM2DQ5VT03 806 aaPredicted RBP9.42□□□□□ -0.9
VPS11-209ENST00000622309 CCDC91Q7Z6B0 441 aa9.42□□□□□ -0.9
VPS11-209ENST00000622309 CHD1LQ86WJ1 897 aa9.42□□□□□ -0.9
VPS11-209ENST00000622309 DRC7Q8IY82 874 aa9.42□□□□□ -0.9
VPS11-209ENST00000622309 DDX19BQ9UMR2 479 aa9.42□□□□□ -0.9
VPS11-209ENST00000622309 APBB1O00213 710 aa9.41□□□□□ -0.9
VPS11-209ENST00000622309 TDO2P48775 406 aa9.41□□□□□ -0.9
VPS11-209ENST00000622309 ZNF446Q9NWS9 450 aa9.41□□□□□ -0.9
VPS11-209ENST00000622309 ERBINQ96RT1 1412 aa9.41□□□□□ -0.9
VPS11-209ENST00000622309 ZNF335Q9H4Z2 1342 aaPredicted RBP9.41□□□□□ -0.9
VPS11-209ENST00000622309 PTGS1P23219 599 aa9.41□□□□□ -0.9
VPS11-209ENST00000622309 ELF2Q15723 593 aa9.41□□□□□ -0.9
VPS11-209ENST00000622309 CCDC183Q5T5S1 534 aa9.41□□□□□ -0.9
VPS11-209ENST00000622309 RNF20Q5VTR2 975 aa9.41□□□□□ -0.9
VPS11-209ENST00000622309 CEP135Q66GS9 1140 aa9.41□□□□□ -0.9
VPS11-209ENST00000622309 ZNF215Q9UL58 517 aaPredicted RBP9.41□□□□□ -0.9
VPS11-209ENST00000622309 MED1Q15648 1581 aaPredicted RBP9.41□□□□□ -0.9
VPS11-209ENST00000622309 MAST1Q9Y2H9 1570 aa9.41□□□□□ -0.9
VPS11-209ENST00000622309 NPHP1O15259 732 aa9.41□□□□□ -0.9
VPS11-209ENST00000622309 CDC45O75419 566 aa9.41□□□□□ -0.9
VPS11-209ENST00000622309 HSP90AB3PQ58FF7 597 aa9.41□□□□□ -0.9
VPS11-209ENST00000622309 UNC13BO14795 1591 aa9.4□□□□□ -0.9
VPS11-209ENST00000622309 TOM1O60784 492 aa9.4□□□□□ -0.9
VPS11-209ENST00000622309 SART3Q15020 963 aaKnown RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms