RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 GNAI3P08754 354 aa19.53■□□□□ 0.72
CPSF1-213ENST00000620219 ERBB3P21860 1342 aa19.53■□□□□ 0.72
CPSF1-213ENST00000620219 SPATA31A3Q5VYP0 1347 aa19.52■□□□□ 0.72
CPSF1-213ENST00000620219 LARP1Q6PKG0 1096 aaKnown RBP19.52■□□□□ 0.71
CPSF1-213ENST00000620219 EXOC6BQ9Y2D4 811 aa19.52■□□□□ 0.71
CPSF1-213ENST00000620219 SHPRHQ149N8 1683 aa19.52■□□□□ 0.71
CPSF1-213ENST00000620219 COL3A1P02461 1466 aaPredicted RBP19.52■□□□□ 0.71
CPSF1-213ENST00000620219 TMOD3Q9NYL9 352 aa19.51■□□□□ 0.71
CPSF1-213ENST00000620219 SURF6O75683 361 aaKnown RBP19.51■□□□□ 0.71
CPSF1-213ENST00000620219 IL2RBP14784 551 aa19.51■□□□□ 0.71
CPSF1-213ENST00000620219 C8orf37Q96NL8 207 aa19.51■□□□□ 0.71
CPSF1-213ENST00000620219 FAM177BA6PVY3 158 aa19.51■□□□□ 0.71
CPSF1-213ENST00000620219 RILPL2Q969X0 211 aa19.51■□□□□ 0.71
CPSF1-213ENST00000620219 EXOC5O00471 708 aa19.5■□□□□ 0.71
CPSF1-213ENST00000620219 SMARCA5O60264 1052 aaPredicted RBP19.5■□□□□ 0.71
CPSF1-213ENST00000620219 JARID2Q92833 1246 aaPredicted RBP19.5■□□□□ 0.71
CPSF1-213ENST00000620219 DBF4Q9UBU7 674 aaPredicted RBP19.5■□□□□ 0.71
CPSF1-213ENST00000620219 USP32Q8NFA0 1604 aa19.5■□□□□ 0.71
CPSF1-213ENST00000620219 BECN1Q14457 450 aa19.49■□□□□ 0.71
CPSF1-213ENST00000620219 NCBP3Q53F19 620 aaKnown RBP19.49■□□□□ 0.71
CPSF1-213ENST00000620219 KIF20BQ96Q89 1820 aa19.48■□□□□ 0.71
CPSF1-213ENST00000620219 ZNF853P0CG23 659 aa19.48■□□□□ 0.71
CPSF1-213ENST00000620219 ARHGAP45Q92619 1136 aa19.48■□□□□ 0.71
CPSF1-213ENST00000620219 SLKQ9H2G2 1235 aaPredicted RBP19.48■□□□□ 0.71
CPSF1-213ENST00000620219 PTPRCP08575 1304 aa19.47■□□□□ 0.71
CPSF1-213ENST00000620219 CHD1LQ86WJ1 897 aa19.47■□□□□ 0.71
CPSF1-213ENST00000620219 DNAAF4Q8WXU2 420 aa19.47■□□□□ 0.71
CPSF1-213ENST00000620219 ACSBG1Q96GR2 724 aa19.47■□□□□ 0.71
CPSF1-213ENST00000620219 FMNL2Q96PY5 1086 aa19.47■□□□□ 0.71
CPSF1-213ENST00000620219 LRRFIP2Q9Y608 721 aaKnown RBP19.47■□□□□ 0.71
CPSF1-213ENST00000620219 TAF7LQ5H9L4 462 aa19.47■□□□□ 0.71
CPSF1-213ENST00000620219 ZBTB40Q9NUA8 1239 aa19.47■□□□□ 0.71
CPSF1-213ENST00000620219 ITSN1Q15811 1721 aa19.46■□□□□ 0.71
CPSF1-213ENST00000620219 SRGAP3O43295 1099 aa19.46■□□□□ 0.71
CPSF1-213ENST00000620219 IL1RAPL2Q9NP60 686 aa19.46■□□□□ 0.71
CPSF1-213ENST00000620219 MAP3K2Q9Y2U5 619 aa19.46■□□□□ 0.71
CPSF1-213ENST00000620219 SIL1Q9H173 461 aa19.46■□□□□ 0.71
CPSF1-213ENST00000620219 HDAC5Q9UQL6 1122 aa19.46■□□□□ 0.71
CPSF1-213ENST00000620219 GCC1Q96CN9 775 aa19.45■□□□□ 0.7
CPSF1-213ENST00000620219 ATP5J2-PTCD1G3V325 749 aa19.44■□□□□ 0.7
CPSF1-213ENST00000620219 DCAF5Q96JK2 942 aa19.44■□□□□ 0.7
CPSF1-213ENST00000620219 PRAMEF22A3QJZ6 481 aa19.44■□□□□ 0.7
CPSF1-213ENST00000620219 ZNF790Q6PG37 636 aa19.44■□□□□ 0.7
CPSF1-213ENST00000620219 MYD88Q99836 296 aa19.44■□□□□ 0.7
CPSF1-213ENST00000620219 ZBTB3Q9H5J0 574 aa19.44■□□□□ 0.7
CPSF1-213ENST00000620219 RTL1A6NKG5 1358 aa19.43■□□□□ 0.7
CPSF1-213ENST00000620219 ZBTB7BO15156 539 aaPredicted RBP19.43■□□□□ 0.7
CPSF1-213ENST00000620219 C8orf34Q49A92 452 aa19.43■□□□□ 0.7
CPSF1-213ENST00000620219 CCDC85AQ96PX6 553 aaPredicted RBP19.43■□□□□ 0.7
CPSF1-213ENST00000620219 EIF4A1P60842 406 aaKnown RBP19.43■□□□□ 0.7
CPSF1-213ENST00000620219 USP19O94966 1318 aa19.43■□□□□ 0.7
CPSF1-213ENST00000620219 COPS6Q7L5N1 327 aa19.43■□□□□ 0.7
CPSF1-213ENST00000620219 SEC24BO95487 1268 aa19.42■□□□□ 0.7
CPSF1-213ENST00000620219 PHKG2P15735 406 aa19.42■□□□□ 0.7
CPSF1-213ENST00000620219 ZNF496Q96IT1 587 aaPredicted RBP19.42■□□□□ 0.7
CPSF1-213ENST00000620219 SNRPA1P09661 255 aaKnown RBP19.42■□□□□ 0.7
CPSF1-213ENST00000620219 RPAP2Q8IXW5 612 aaPredicted RBP19.42■□□□□ 0.7
CPSF1-213ENST00000620219 GTF2E1P29083 439 aaPredicted RBP19.42■□□□□ 0.7
CPSF1-213ENST00000620219 XAGE3Q8WTP9 111 aa19.42■□□□□ 0.7
CPSF1-213ENST00000620219 KCNJ4P48050 445 aa19.41■□□□□ 0.7
CPSF1-213ENST00000620219 G3BP1Q13283 466 aaKnown RBP eCLIP19.41■□□□□ 0.7
CPSF1-213ENST00000620219 SLC52A2Q9HAB3 445 aa19.41■□□□□ 0.7
CPSF1-213ENST00000620219 KIF24Q5T7B8 1368 aa19.41■□□□□ 0.7
CPSF1-213ENST00000620219 CWF19L2Q2TBE0 894 aaKnown RBP19.4■□□□□ 0.7
CPSF1-213ENST00000620219 SETD1AO15047 1707 aaKnown RBP19.4■□□□□ 0.7
CPSF1-213ENST00000620219 HYPKQ9NX55 129 aa19.4■□□□□ 0.7
CPSF1-213ENST00000620219 RGPD8O14715 1765 aaPredicted RBP19.39■□□□□ 0.69
CPSF1-213ENST00000620219 TNS3Q68CZ2 1445 aa19.39■□□□□ 0.69
CPSF1-213ENST00000620219 GORABQ5T7V8 394 aa19.38■□□□□ 0.69
CPSF1-213ENST00000620219 DDB1Q16531 1140 aa19.38■□□□□ 0.69
CPSF1-213ENST00000620219 IFIT2P09913 472 aaKnown RBP19.38■□□□□ 0.69
CPSF1-213ENST00000620219 TSHZ3Q63HK5 1081 aa19.38■□□□□ 0.69
CPSF1-213ENST00000620219 ADAMTSL3P82987 1691 aa19.38■□□□□ 0.69
CPSF1-213ENST00000620219 MST1RQ04912 1400 aa19.37■□□□□ 0.69
CPSF1-213ENST00000620219 PCDH11XQ9BZA7 1347 aa19.37■□□□□ 0.69
CPSF1-213ENST00000620219 PCDH11YQ9BZA8 1340 aa19.37■□□□□ 0.69
CPSF1-213ENST00000620219 MAP4K4O95819 1239 aaPredicted RBP19.37■□□□□ 0.69
CPSF1-213ENST00000620219 USP16Q9Y5T5 823 aa19.37■□□□□ 0.69
CPSF1-213ENST00000620219 WDR17Q8IZU2 1322 aa19.36■□□□□ 0.69
CPSF1-213ENST00000620219 CYP27B1O15528 508 aa19.36■□□□□ 0.69
CPSF1-213ENST00000620219 C16orf71Q8IYS4 520 aaPredicted RBP19.36■□□□□ 0.69
CPSF1-213ENST00000620219 LRRCC1Q9C099 1032 aa19.36■□□□□ 0.69
CPSF1-213ENST00000620219 FOXD4L1Q9NU39 408 aa19.36■□□□□ 0.69
CPSF1-213ENST00000620219 HDAC1Q13547 482 aaPredicted RBP19.36■□□□□ 0.69
CPSF1-213ENST00000620219 KIF6Q6ZMV9 814 aa19.36■□□□□ 0.69
CPSF1-213ENST00000620219 SSH2Q76I76 1423 aa19.36■□□□□ 0.69
CPSF1-213ENST00000620219 ANKRD13DQ6ZTN6 518 aa19.35■□□□□ 0.69
CPSF1-213ENST00000620219 GIGYF1O75420 1035 aaPredicted RBP19.35■□□□□ 0.69
CPSF1-213ENST00000620219 PROSER3Q2NL68 480 aa19.35■□□□□ 0.69
CPSF1-213ENST00000620219 NUTM1Q86Y26 1132 aa19.35■□□□□ 0.69
CPSF1-213ENST00000620219 STARD3NLO95772 234 aa19.35■□□□□ 0.69
CPSF1-213ENST00000620219 PPP1R42Q7Z4L9 355 aa19.35■□□□□ 0.69
CPSF1-213ENST00000620219 GPTP24298 496 aa19.34■□□□□ 0.69
CPSF1-213ENST00000620219 NOL8Q76FK4 1167 aaKnown RBP19.34■□□□□ 0.69
CPSF1-213ENST00000620219 GPATCH3Q96I76 525 aa19.34■□□□□ 0.69
CPSF1-213ENST00000620219 A1BGP04217 495 aa19.34■□□□□ 0.69
CPSF1-213ENST00000620219 HSCBQ8IWL3 235 aa19.34■□□□□ 0.69
CPSF1-213ENST00000620219 NEUROD6Q96NK8 337 aa19.34■□□□□ 0.69
CPSF1-213ENST00000620219 UBE3BQ7Z3V4 1068 aa19.33■□□□□ 0.69
CPSF1-213ENST00000620219 INTS3Q68E01 1043 aaKnown RBP19.33■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms