RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 RIPK4P57078 832 aa25.98■■□□□ 1.75
UPF3A-211ENST00000618700 IL17REQ8NFR9 667 aa25.98■■□□□ 1.75
UPF3A-211ENST00000618700 ACSBG1Q96GR2 724 aa25.98■■□□□ 1.75
UPF3A-211ENST00000618700 LGR6Q9HBX8 967 aa25.98■■□□□ 1.75
UPF3A-211ENST00000618700 TNS1Q9HBL0 1735 aaKnown RBP25.97■■□□□ 1.75
UPF3A-211ENST00000618700 ERVV-2B6SEH9 535 aa25.96■■□□□ 1.75
UPF3A-211ENST00000618700 KCNQ2O43526 872 aa25.95■■□□□ 1.74
UPF3A-211ENST00000618700 ABCB7O75027 752 aa25.95■■□□□ 1.74
UPF3A-211ENST00000618700 PRIM1P49642 420 aaKnown RBP25.95■■□□□ 1.74
UPF3A-211ENST00000618700 LMOD3Q0VAK6 560 aa25.95■■□□□ 1.74
UPF3A-211ENST00000618700 MCM10Q7L590 875 aa25.95■■□□□ 1.74
UPF3A-211ENST00000618700 RTF1Q92541 710 aaKnown RBP25.95■■□□□ 1.74
UPF3A-211ENST00000618700 TRIM35Q9UPQ4 493 aa25.95■■□□□ 1.74
UPF3A-211ENST00000618700 SIPA1L3O60292 1781 aaPredicted RBP25.95■■□□□ 1.74
UPF3A-211ENST00000618700 NEUROD2Q15784 382 aa25.94■■□□□ 1.74
UPF3A-211ENST00000618700 PTF1AQ7RTS3 328 aa25.94■■□□□ 1.74
UPF3A-211ENST00000618700 CCDC125Q86Z20 511 aa25.94■■□□□ 1.74
UPF3A-211ENST00000618700 BTAF1O14981 1849 aa25.93■■□□□ 1.74
UPF3A-211ENST00000618700 TRIM37O94972 964 aa25.93■■□□□ 1.74
UPF3A-211ENST00000618700 DCTN1Q14203 1278 aa25.93■■□□□ 1.74
UPF3A-211ENST00000618700 BCL11BQ9C0K0 894 aaPredicted RBP25.93■■□□□ 1.74
UPF3A-211ENST00000618700 SLC52A2Q9HAB3 445 aa25.93■■□□□ 1.74
UPF3A-211ENST00000618700 CCDC27Q2M243 656 aa25.91■■□□□ 1.74
UPF3A-211ENST00000618700 SYTL4Q96C24 671 aaPredicted RBP25.91■■□□□ 1.74
UPF3A-211ENST00000618700 PIGBQ92521 554 aa25.9■■□□□ 1.74
UPF3A-211ENST00000618700 THUMPD2Q9BTF0 503 aaKnown RBP25.9■■□□□ 1.74
UPF3A-211ENST00000618700 TMOD3Q9NYL9 352 aa25.9■■□□□ 1.74
UPF3A-211ENST00000618700 KAT6BQ8WYB5 2073 aa25.9■■□□□ 1.74
UPF3A-211ENST00000618700 PAPPAQ13219 1627 aa25.89■■□□□ 1.74
UPF3A-211ENST00000618700 SENP3-EIF4A1A0A087X0R7 540 aa25.89■■□□□ 1.74
UPF3A-211ENST00000618700 CABP4P57796 275 aa25.89■■□□□ 1.74
UPF3A-211ENST00000618700 NGEFQ8N5V2 710 aa25.89■■□□□ 1.74
UPF3A-211ENST00000618700 TEFQ10587 303 aa25.88■■□□□ 1.73
UPF3A-211ENST00000618700 NFATC2IPQ8NCF5 419 aa25.87■■□□□ 1.73
UPF3A-211ENST00000618700 RGPD3A6NKT7 1758 aaPredicted RBP25.86■■□□□ 1.73
UPF3A-211ENST00000618700 RGPD4Q7Z3J3 1758 aa25.86■■□□□ 1.73
UPF3A-211ENST00000618700 WWC1Q8IX03 1113 aa25.85■■□□□ 1.73
UPF3A-211ENST00000618700 ZNF521Q96K83 1311 aa25.83■■□□□ 1.73
UPF3A-211ENST00000618700 SF3B2Q13435 895 aaKnown RBP25.82■■□□□ 1.72
UPF3A-211ENST00000618700 APBA3O96018 575 aa25.81■■□□□ 1.72
UPF3A-211ENST00000618700 TAF7Q15545 349 aaPredicted RBP25.81■■□□□ 1.72
UPF3A-211ENST00000618700 ATG3Q9NT62 314 aa25.81■■□□□ 1.72
UPF3A-211ENST00000618700 ASAP1Q9ULH1 1129 aa25.81■■□□□ 1.72
UPF3A-211ENST00000618700 SALL2Q9Y467 1007 aaPredicted RBP25.81■■□□□ 1.72
UPF3A-211ENST00000618700 KDM3BQ7LBC6 1761 aa25.81■■□□□ 1.72
UPF3A-211ENST00000618700 UBR2Q8IWV8 1755 aa25.81■■□□□ 1.72
UPF3A-211ENST00000618700 LY75O60449 1722 aa25.8■■□□□ 1.72
UPF3A-211ENST00000618700 PALLDQ8WX93 1383 aa25.8■■□□□ 1.72
UPF3A-211ENST00000618700 KCPQ6ZWJ8 1503 aa25.79■■□□□ 1.72
UPF3A-211ENST00000618700 CALD1Q05682 793 aaKnown RBP25.79■■□□□ 1.72
UPF3A-211ENST00000618700 PLSCR1O15162 318 aa25.78■■□□□ 1.72
UPF3A-211ENST00000618700 DEFB132Q7Z7B7 95 aa25.78■■□□□ 1.72
UPF3A-211ENST00000618700 SMARCC1Q92922 1105 aaPredicted RBP25.78■■□□□ 1.72
UPF3A-211ENST00000618700 BTBD11A6QL63 1104 aa25.77■■□□□ 1.72
UPF3A-211ENST00000618700 SLC39A6Q13433 755 aa25.77■■□□□ 1.72
UPF3A-211ENST00000618700 POLA2Q14181 598 aa25.77■■□□□ 1.72
UPF3A-211ENST00000618700 IL16Q14005 1332 aa25.77■■□□□ 1.72
UPF3A-211ENST00000618700 ZNF853P0CG23 659 aa25.76■■□□□ 1.71
UPF3A-211ENST00000618700 HNRNPUQ00839 825 aaKnown RBP eCLIP25.76■■□□□ 1.71
UPF3A-211ENST00000618700 WDR63Q8IWG1 891 aa25.76■■□□□ 1.71
UPF3A-211ENST00000618700 BABAM1Q9NWV8 329 aa25.76■■□□□ 1.71
UPF3A-211ENST00000618700 ZNF831Q5JPB2 1677 aa25.75■■□□□ 1.71
UPF3A-211ENST00000618700 BAG6P46379 1132 aa25.75■■□□□ 1.71
UPF3A-211ENST00000618700 ZNF790Q6PG37 636 aa25.75■■□□□ 1.71
UPF3A-211ENST00000618700 IFT57Q9NWB7 429 aa25.75■■□□□ 1.71
UPF3A-211ENST00000618700 CICQ96RK0 1608 aaPredicted RBP25.74■■□□□ 1.71
UPF3A-211ENST00000618700 CHL1O00533 1208 aa25.74■■□□□ 1.71
UPF3A-211ENST00000618700 CFAP44Q96MT7 982 aa25.74■■□□□ 1.71
UPF3A-211ENST00000618700 RREB1Q92766 1687 aa25.74■■□□□ 1.71
UPF3A-211ENST00000618700 CAMKK2Q96RR4 588 aa25.73■■□□□ 1.71
UPF3A-211ENST00000618700 MIS18AQ9NYP9 233 aa25.73■■□□□ 1.71
UPF3A-211ENST00000618700 KCNQ3O43525 872 aa25.72■■□□□ 1.71
UPF3A-211ENST00000618700 TSPYL4Q9UJ04 414 aa25.72■■□□□ 1.71
UPF3A-211ENST00000618700 GNAI1P63096 354 aa25.71■■□□□ 1.71
UPF3A-211ENST00000618700 EN1Q05925 392 aaPredicted RBP25.71■■□□□ 1.71
UPF3A-211ENST00000618700 TTC5Q8N0Z6 440 aa25.71■■□□□ 1.71
UPF3A-211ENST00000618700 LOC102724428A0A0B4J2F2 783 aa25.7■■□□□ 1.7
UPF3A-211ENST00000618700 SIK1P57059 783 aa25.7■■□□□ 1.7
UPF3A-211ENST00000618700 PROM2Q8N271 834 aa25.7■■□□□ 1.7
UPF3A-211ENST00000618700 ZNF496Q96IT1 587 aaPredicted RBP25.7■■□□□ 1.7
UPF3A-211ENST00000618700 PTCD1O75127 700 aaKnown RBP25.69■■□□□ 1.7
UPF3A-211ENST00000618700 EZH2Q15910 746 aaKnown RBP25.69■■□□□ 1.7
UPF3A-211ENST00000618700 SLC4A9Q96Q91 983 aa25.69■■□□□ 1.7
UPF3A-211ENST00000618700 MBIPQ9NS73 344 aa25.69■■□□□ 1.7
UPF3A-211ENST00000618700 LAS1LQ9Y4W2 734 aaKnown RBP25.69■■□□□ 1.7
UPF3A-211ENST00000618700 HEG1Q9ULI3 1381 aa25.69■■□□□ 1.7
UPF3A-211ENST00000618700 TJP1Q07157 1748 aa25.68■■□□□ 1.7
UPF3A-211ENST00000618700 ZBED9Q6R2W3 1325 aa25.68■■□□□ 1.7
UPF3A-211ENST00000618700 TXNRD1Q16881 649 aa25.68■■□□□ 1.7
UPF3A-211ENST00000618700 SLC27A3Q5K4L6 730 aa25.68■■□□□ 1.7
UPF3A-211ENST00000618700 EIF4A1P60842 406 aaKnown RBP25.67■■□□□ 1.7
UPF3A-211ENST00000618700 NUP188Q5SRE5 1749 aa25.67■■□□□ 1.7
UPF3A-211ENST00000618700 RBM42Q9BTD8 480 aaKnown RBP25.67■■□□□ 1.7
UPF3A-211ENST00000618700 GOLGA2Q08379 1002 aa25.66■■□□□ 1.7
UPF3A-211ENST00000618700 FMNL2Q96PY5 1086 aa25.66■■□□□ 1.7
UPF3A-211ENST00000618700 LRRC4BQ9NT99 713 aa25.66■■□□□ 1.7
UPF3A-211ENST00000618700 CCNL1Q9UK58 526 aaPredicted RBP25.66■■□□□ 1.7
UPF3A-211ENST00000618700 VSIG10Q8N0Z9 540 aa25.65■■□□□ 1.7
UPF3A-211ENST00000618700 COL5A3P25940 1745 aaPredicted RBP25.65■■□□□ 1.7
UPF3A-211ENST00000618700 TAF1LQ8IZX4 1826 aa25.65■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms