RNA–Protein interactions for RNA: ENST00000600137.5

VRK3-219, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 822 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-219ENST00000600137 TMOD3Q9NYL9 352 aa18.21■□□□□ 0.51
VRK3-219ENST00000600137 SIPA1L3O60292 1781 aaPredicted RBP18.21■□□□□ 0.51
VRK3-219ENST00000600137 CABP4P57796 275 aa18.2■□□□□ 0.5
VRK3-219ENST00000600137 TXNRD1Q16881 649 aa18.2■□□□□ 0.5
VRK3-219ENST00000600137 MCM10Q7L590 875 aa18.2■□□□□ 0.5
VRK3-219ENST00000600137 LRRC4BQ9NT99 713 aa18.2■□□□□ 0.5
VRK3-219ENST00000600137 TRIM35Q9UPQ4 493 aa18.19■□□□□ 0.5
VRK3-219ENST00000600137 MAPK8IP3Q9UPT6 1336 aa18.19■□□□□ 0.5
VRK3-219ENST00000600137 RIPK4P57078 832 aa18.18■□□□□ 0.5
VRK3-219ENST00000600137 SLC4A9Q96Q91 983 aa18.18■□□□□ 0.5
VRK3-219ENST00000600137 RRP7AQ9Y3A4 280 aaKnown RBP18.18■□□□□ 0.5
VRK3-219ENST00000600137 NUP188Q5SRE5 1749 aa18.18■□□□□ 0.5
VRK3-219ENST00000600137 APAF1O14727 1248 aa18.17■□□□□ 0.5
VRK3-219ENST00000600137 NEFMP07197 916 aa18.17■□□□□ 0.5
VRK3-219ENST00000600137 PALLDQ8WX93 1383 aa18.17■□□□□ 0.5
VRK3-219ENST00000600137 KCNQ4P56696 695 aa18.16■□□□□ 0.5
VRK3-219ENST00000600137 SMARCC1Q92922 1105 aaPredicted RBP18.16■□□□□ 0.5
VRK3-219ENST00000600137 THUMPD2Q9BTF0 503 aaKnown RBP18.16■□□□□ 0.5
VRK3-219ENST00000600137 PAPPAQ13219 1627 aa18.16■□□□□ 0.5
VRK3-219ENST00000600137 SLC39A6Q13433 755 aa18.15■□□□□ 0.5
VRK3-219ENST00000600137 FAM9BQ8IZU0 186 aa18.15■□□□□ 0.5
VRK3-219ENST00000600137 NEUROD2Q15784 382 aa18.14■□□□□ 0.49
VRK3-219ENST00000600137 RTF1Q92541 710 aaKnown RBP18.14■□□□□ 0.49
VRK3-219ENST00000600137 TEFQ10587 303 aa18.13■□□□□ 0.49
VRK3-219ENST00000600137 SLC27A3Q5K4L6 730 aa18.13■□□□□ 0.49
VRK3-219ENST00000600137 TAF1LQ8IZX4 1826 aa18.12■□□□□ 0.49
VRK3-219ENST00000600137 LOC102724428A0A0B4J2F2 783 aa18.12■□□□□ 0.49
VRK3-219ENST00000600137 KCNQ3O43525 872 aa18.12■□□□□ 0.49
VRK3-219ENST00000600137 SIK1P57059 783 aa18.12■□□□□ 0.49
VRK3-219ENST00000600137 ANO8Q9HCE9 1232 aaPredicted RBP18.12■□□□□ 0.49
VRK3-219ENST00000600137 ZNF831Q5JPB2 1677 aa18.12■□□□□ 0.49
VRK3-219ENST00000600137 UBR2Q8IWV8 1755 aa18.12■□□□□ 0.49
VRK3-219ENST00000600137 ITPK1Q13572 414 aa18.11■□□□□ 0.49
VRK3-219ENST00000600137 TAF7Q15545 349 aaPredicted RBP18.11■□□□□ 0.49
VRK3-219ENST00000600137 CCNL1Q9UK58 526 aaPredicted RBP18.11■□□□□ 0.49
VRK3-219ENST00000600137 KCPQ6ZWJ8 1503 aa18.11■□□□□ 0.49
VRK3-219ENST00000600137 SENP3-EIF4A1A0A087X0R7 540 aa18.1■□□□□ 0.49
VRK3-219ENST00000600137 NCBP3Q53F19 620 aaKnown RBP18.1■□□□□ 0.49
VRK3-219ENST00000600137 ZNF790Q6PG37 636 aa18.1■□□□□ 0.49
VRK3-219ENST00000600137 PTCD1O75127 700 aaKnown RBP18.09■□□□□ 0.49
VRK3-219ENST00000600137 AKT1S1Q96B36 256 aa18.09■□□□□ 0.49
VRK3-219ENST00000600137 MIS18AQ9NYP9 233 aa18.09■□□□□ 0.49
VRK3-219ENST00000600137 BTBD11A6QL63 1104 aa18.08■□□□□ 0.48
VRK3-219ENST00000600137 LMOD3Q0VAK6 560 aa18.08■□□□□ 0.48
VRK3-219ENST00000600137 ZNF827Q17R98 1081 aa18.08■□□□□ 0.48
VRK3-219ENST00000600137 ZNF496Q96IT1 587 aaPredicted RBP18.08■□□□□ 0.48
VRK3-219ENST00000600137 ATP6V1AP38606 617 aa18.07■□□□□ 0.48
VRK3-219ENST00000600137 CCDC27Q2M243 656 aa18.07■□□□□ 0.48
VRK3-219ENST00000600137 LINC00116Q8NCU8 138 aa18.07■□□□□ 0.48
VRK3-219ENST00000600137 RBM42Q9BTD8 480 aaKnown RBP18.07■□□□□ 0.48
VRK3-219ENST00000600137 CICQ96RK0 1608 aaPredicted RBP18.07■□□□□ 0.48
VRK3-219ENST00000600137 KDM3BQ7LBC6 1761 aa18.07■□□□□ 0.48
VRK3-219ENST00000600137 C5P01031 1676 aa18.06■□□□□ 0.48
VRK3-219ENST00000600137 SLC15A2Q16348 729 aa18.06■□□□□ 0.48
VRK3-219ENST00000600137 TJP1Q07157 1748 aa18.06■□□□□ 0.48
VRK3-219ENST00000600137 MYH14Q7Z406 1995 aaKnown RBP18.06■□□□□ 0.48
VRK3-219ENST00000600137 CHL1O00533 1208 aa18.05■□□□□ 0.48
VRK3-219ENST00000600137 ZNF853P0CG23 659 aa18.05■□□□□ 0.48
VRK3-219ENST00000600137 WWC1Q8IX03 1113 aa18.05■□□□□ 0.48
VRK3-219ENST00000600137 COL5A3P25940 1745 aaPredicted RBP18.05■□□□□ 0.48
VRK3-219ENST00000600137 HEG1Q9ULI3 1381 aa18.04■□□□□ 0.48
VRK3-219ENST00000600137 NBPF14Q5TI25 921 aa18.04■□□□□ 0.48
VRK3-219ENST00000600137 AMIGO3Q86WK7 504 aa18.04■□□□□ 0.48
VRK3-219ENST00000600137 VSIG10Q8N0Z9 540 aa18.04■□□□□ 0.48
VRK3-219ENST00000600137 BABAM1Q9NWV8 329 aa18.04■□□□□ 0.48
VRK3-219ENST00000600137 C4BP0C0L5 1744 aa18.03■□□□□ 0.48
VRK3-219ENST00000600137 EIF4A1P60842 406 aaKnown RBP18.03■□□□□ 0.48
VRK3-219ENST00000600137 R3HDM1Q15032 1099 aaKnown RBP18.03■□□□□ 0.48
VRK3-219ENST00000600137 DNAJC10Q8IXB1 793 aa18.03■□□□□ 0.48
VRK3-219ENST00000600137 TUBGCP6Q96RT7 1819 aa18.02■□□□□ 0.48
VRK3-219ENST00000600137 PSDA5PKW4 1024 aaPredicted RBP18.02■□□□□ 0.48
VRK3-219ENST00000600137 TTC5Q8N0Z6 440 aa18.02■□□□□ 0.48
VRK3-219ENST00000600137 PDGFDQ9GZP0 370 aaPredicted RBP18.02■□□□□ 0.48
VRK3-219ENST00000600137 PRAMEF22A3QJZ6 481 aa18.01■□□□□ 0.47
VRK3-219ENST00000600137 CYP19A1P11511 503 aaPredicted RBP18.01■□□□□ 0.47
VRK3-219ENST00000600137 RC3H1Q5TC82 1133 aaKnown RBP18.01■□□□□ 0.47
VRK3-219ENST00000600137 CFAP44Q96MT7 982 aa18.01■□□□□ 0.47
VRK3-219ENST00000600137 FMNL2Q96PY5 1086 aa18.01■□□□□ 0.47
VRK3-219ENST00000600137 STK32BQ9NY57 414 aa18.01■□□□□ 0.47
VRK3-219ENST00000600137 ZNF521Q96K83 1311 aa18■□□□□ 0.47
VRK3-219ENST00000600137 INTS5Q6P9B9 1019 aaKnown RBP18■□□□□ 0.47
VRK3-219ENST00000600137 SMIM5Q71RC9 77 aa18■□□□□ 0.47
VRK3-219ENST00000600137 SALL2Q9Y467 1007 aaPredicted RBP18■□□□□ 0.47
VRK3-219ENST00000600137 UBR3Q6ZT12 1888 aa18■□□□□ 0.47
VRK3-219ENST00000600137 QSER1Q2KHR3 1735 aa18■□□□□ 0.47
VRK3-219ENST00000600137 NGEFQ8N5V2 710 aa17.99■□□□□ 0.47
VRK3-219ENST00000600137 TSPYL4Q9UJ04 414 aa17.99■□□□□ 0.47
VRK3-219ENST00000600137 USP16Q9Y5T5 823 aa17.99■□□□□ 0.47
VRK3-219ENST00000600137 PNPLA7Q6ZV29 1317 aa17.98■□□□□ 0.47
VRK3-219ENST00000600137 CNTNAP4Q9C0A0 1308 aa17.98■□□□□ 0.47
VRK3-219ENST00000600137 GIGYF1O75420 1035 aaPredicted RBP17.98■□□□□ 0.47
VRK3-219ENST00000600137 CRKLP46109 303 aaKnown RBP17.98■□□□□ 0.47
VRK3-219ENST00000600137 IFT57Q9NWB7 429 aa17.98■□□□□ 0.47
VRK3-219ENST00000600137 CASZ1Q86V15 1759 aa17.98■□□□□ 0.47
VRK3-219ENST00000600137 WDR63Q8IWG1 891 aa17.97■□□□□ 0.47
VRK3-219ENST00000600137 SPINK5Q9NQ38 1064 aaPredicted RBP17.97■□□□□ 0.47
VRK3-219ENST00000600137 MBIPQ9NS73 344 aa17.97■□□□□ 0.47
VRK3-219ENST00000600137 SNRPA1P09661 255 aaKnown RBP17.96■□□□□ 0.47
VRK3-219ENST00000600137 HMGB2P26583 209 aaKnown RBP17.96■□□□□ 0.47
VRK3-219ENST00000600137 KRT24Q2M2I5 525 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms