RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-227	ENST00000600026	CABP4	P57796	275 aa		28.88	■■■□□ 2.21
LTBP4-227	ENST00000600026	APAF1	O14727	1248 aa		28.87	■■■□□ 2.21
LTBP4-227	ENST00000600026	MCM10	Q7L590	875 aa		28.87	■■■□□ 2.21
LTBP4-227	ENST00000600026	DCTN1	Q14203	1278 aa		28.86	■■■□□ 2.21
LTBP4-227	ENST00000600026	SLC52A2	Q9HAB3	445 aa		28.86	■■■□□ 2.21
LTBP4-227	ENST00000600026	EN1	Q05925	392 aa	Predicted RBP	28.85	■■■□□ 2.21
LTBP4-227	ENST00000600026	NEUROD2	Q15784	382 aa		28.85	■■■□□ 2.21
LTBP4-227	ENST00000600026	NFATC2IP	Q8NCF5	419 aa		28.84	■■■□□ 2.21
LTBP4-227	ENST00000600026	PLSCR1	O15162	318 aa		28.83	■■■□□ 2.21
LTBP4-227	ENST00000600026	NUP188	Q5SRE5	1749 aa		28.83	■■■□□ 2.21
LTBP4-227	ENST00000600026	HNRNPU	Q00839	825 aa	Known RBP eCLIP	28.82	■■■□□ 2.2
LTBP4-227	ENST00000600026	LMOD3	Q0VAK6	560 aa		28.82	■■■□□ 2.2
LTBP4-227	ENST00000600026	TEF	Q10587	303 aa		28.82	■■■□□ 2.2
LTBP4-227	ENST00000600026	EZH2	Q15910	746 aa	Known RBP	28.81	■■■□□ 2.2
LTBP4-227	ENST00000600026	CAMKK2	Q96RR4	588 aa		28.81	■■■□□ 2.2
LTBP4-227	ENST00000600026	PALLD	Q8WX93	1383 aa		28.8	■■■□□ 2.2
LTBP4-227	ENST00000600026	NGEF	Q8N5V2	710 aa		28.8	■■■□□ 2.2
LTBP4-227	ENST00000600026	YTHDC1	Q96MU7	727 aa	Known RBP	28.8	■■■□□ 2.2
LTBP4-227	ENST00000600026	THUMPD2	Q9BTF0	503 aa	Known RBP	28.8	■■■□□ 2.2
LTBP4-227	ENST00000600026	TRIM35	Q9UPQ4	493 aa		28.8	■■■□□ 2.2
LTBP4-227	ENST00000600026	UBR2	Q8IWV8	1755 aa		28.8	■■■□□ 2.2
LTBP4-227	ENST00000600026	SENP3-EIF4A1	A0A087X0R7	540 aa		28.79	■■■□□ 2.2
LTBP4-227	ENST00000600026	ATG3	Q9NT62	314 aa		28.79	■■■□□ 2.2
LTBP4-227	ENST00000600026	ASAP1	Q9ULH1	1129 aa		28.79	■■■□□ 2.2
LTBP4-227	ENST00000600026	SMARCC1	Q92922	1105 aa	Predicted RBP	28.78	■■■□□ 2.2
LTBP4-227	ENST00000600026	KDM3B	Q7LBC6	1761 aa		28.78	■■■□□ 2.2
LTBP4-227	ENST00000600026	NCBP3	Q53F19	620 aa	Known RBP	28.76	■■■□□ 2.19
LTBP4-227	ENST00000600026	TXNRD1	Q16881	649 aa		28.75	■■■□□ 2.19
LTBP4-227	ENST00000600026	TAF1L	Q8IZX4	1826 aa		28.75	■■■□□ 2.19
LTBP4-227	ENST00000600026	ZNF831	Q5JPB2	1677 aa		28.74	■■■□□ 2.19
LTBP4-227	ENST00000600026	PSD	A5PKW4	1024 aa	Predicted RBP	28.74	■■■□□ 2.19
LTBP4-227	ENST00000600026	PROM2	Q8N271	834 aa		28.74	■■■□□ 2.19
LTBP4-227	ENST00000600026	KCP	Q6ZWJ8	1503 aa		28.74	■■■□□ 2.19
LTBP4-227	ENST00000600026	C5	P01031	1676 aa		28.74	■■■□□ 2.19
LTBP4-227	ENST00000600026	SLC39A6	Q13433	755 aa		28.73	■■■□□ 2.19
LTBP4-227	ENST00000600026	SALL2	Q9Y467	1007 aa	Predicted RBP	28.73	■■■□□ 2.19
LTBP4-227	ENST00000600026	CIC	Q96RK0	1608 aa	Predicted RBP	28.72	■■■□□ 2.19
LTBP4-227	ENST00000600026	BTBD11	A6QL63	1104 aa		28.71	■■■□□ 2.19
LTBP4-227	ENST00000600026	TAF7	Q15545	349 aa	Predicted RBP	28.71	■■■□□ 2.19
LTBP4-227	ENST00000600026	TJP1	Q07157	1748 aa		28.71	■■■□□ 2.19
LTBP4-227	ENST00000600026	CCNL1	Q9UK58	526 aa	Predicted RBP	28.7	■■■□□ 2.18
LTBP4-227	ENST00000600026	CCDC27	Q2M243	656 aa		28.69	■■■□□ 2.18
LTBP4-227	ENST00000600026	COL5A3	P25940	1745 aa	Predicted RBP	28.69	■■■□□ 2.18
LTBP4-227	ENST00000600026	LOC102724428	A0A0B4J2F2	783 aa		28.68	■■■□□ 2.18
LTBP4-227	ENST00000600026	SIK1	P57059	783 aa		28.68	■■■□□ 2.18
LTBP4-227	ENST00000600026	SLC27A3	Q5K4L6	730 aa		28.68	■■■□□ 2.18
LTBP4-227	ENST00000600026	RBM42	Q9BTD8	480 aa	Known RBP	28.68	■■■□□ 2.18
LTBP4-227	ENST00000600026	LRRC4B	Q9NT99	713 aa		28.68	■■■□□ 2.18
LTBP4-227	ENST00000600026	KCNQ4	P56696	695 aa		28.67	■■■□□ 2.18
LTBP4-227	ENST00000600026	ZNF790	Q6PG37	636 aa		28.67	■■■□□ 2.18
LTBP4-227	ENST00000600026	TTC5	Q8N0Z6	440 aa		28.67	■■■□□ 2.18
LTBP4-227	ENST00000600026	ZBED9	Q6R2W3	1325 aa		28.67	■■■□□ 2.18
LTBP4-227	ENST00000600026	PTCD1	O75127	700 aa	Known RBP	28.66	■■■□□ 2.18
LTBP4-227	ENST00000600026	KCNQ3	O43525	872 aa		28.65	■■■□□ 2.18
LTBP4-227	ENST00000600026	SLC4A9	Q96Q91	983 aa		28.65	■■■□□ 2.18
LTBP4-227	ENST00000600026	MIS18A	Q9NYP9	233 aa		28.65	■■■□□ 2.18
LTBP4-227	ENST00000600026	WWC1	Q8IX03	1113 aa		28.64	■■■□□ 2.18
LTBP4-227	ENST00000600026	C4B	P0C0L5	1744 aa		28.63	■■■□□ 2.17
LTBP4-227	ENST00000600026	ATP6V1A	P38606	617 aa		28.62	■■■□□ 2.17
LTBP4-227	ENST00000600026	CALD1	Q05682	793 aa	Known RBP	28.62	■■■□□ 2.17
LTBP4-227	ENST00000600026	TUBGCP6	Q96RT7	1819 aa		28.62	■■■□□ 2.17
LTBP4-227	ENST00000600026	ITPK1	Q13572	414 aa		28.61	■■■□□ 2.17
LTBP4-227	ENST00000600026	ZNF496	Q96IT1	587 aa	Predicted RBP	28.61	■■■□□ 2.17
LTBP4-227	ENST00000600026	BABAM1	Q9NWV8	329 aa		28.61	■■■□□ 2.17
LTBP4-227	ENST00000600026	TSPYL4	Q9UJ04	414 aa		28.61	■■■□□ 2.17
LTBP4-227	ENST00000600026	LRP5	O75197	1615 aa		28.61	■■■□□ 2.17
LTBP4-227	ENST00000600026	LAS1L	Q9Y4W2	734 aa	Known RBP	28.6	■■■□□ 2.17
LTBP4-227	ENST00000600026	HEG1	Q9ULI3	1381 aa		28.6	■■■□□ 2.17
LTBP4-227	ENST00000600026	LAMB4	A4D0S4	1761 aa		28.6	■■■□□ 2.17
LTBP4-227	ENST00000600026	WDR63	Q8IWG1	891 aa		28.59	■■■□□ 2.17
LTBP4-227	ENST00000600026	FMNL2	Q96PY5	1086 aa		28.59	■■■□□ 2.17
LTBP4-227	ENST00000600026	CFAP44	Q96MT7	982 aa		28.58	■■■□□ 2.17
LTBP4-227	ENST00000600026	ANO8	Q9HCE9	1232 aa	Predicted RBP	28.58	■■■□□ 2.17
LTBP4-227	ENST00000600026	ZNF521	Q96K83	1311 aa		28.58	■■■□□ 2.17
LTBP4-227	ENST00000600026	CHL1	O00533	1208 aa		28.57	■■■□□ 2.16
LTBP4-227	ENST00000600026	VSIG10	Q8N0Z9	540 aa		28.57	■■■□□ 2.16
LTBP4-227	ENST00000600026	LINC00116	Q8NCU8	138 aa		28.57	■■■□□ 2.16
LTBP4-227	ENST00000600026	IFT57	Q9NWB7	429 aa		28.57	■■■□□ 2.16
LTBP4-227	ENST00000600026	QSER1	Q2KHR3	1735 aa		28.57	■■■□□ 2.16
LTBP4-227	ENST00000600026	ZNF853	P0CG23	659 aa		28.56	■■■□□ 2.16
LTBP4-227	ENST00000600026	GNAI1	P63096	354 aa		28.55	■■■□□ 2.16
LTBP4-227	ENST00000600026	GOLGA2	Q08379	1002 aa		28.55	■■■□□ 2.16
LTBP4-227	ENST00000600026	DNAJC10	Q8IXB1	793 aa		28.55	■■■□□ 2.16
LTBP4-227	ENST00000600026	MYH14	Q7Z406	1995 aa	Known RBP	28.55	■■■□□ 2.16
LTBP4-227	ENST00000600026	UBR3	Q6ZT12	1888 aa		28.55	■■■□□ 2.16
LTBP4-227	ENST00000600026	IL16	Q14005	1332 aa		28.54	■■■□□ 2.16
LTBP4-227	ENST00000600026	EIF4A1	P60842	406 aa	Known RBP	28.54	■■■□□ 2.16
LTBP4-227	ENST00000600026	ZNF827	Q17R98	1081 aa		28.54	■■■□□ 2.16
LTBP4-227	ENST00000600026	NBPF14	Q5TI25	921 aa		28.54	■■■□□ 2.16
LTBP4-227	ENST00000600026	MBIP	Q9NS73	344 aa		28.53	■■■□□ 2.16
LTBP4-227	ENST00000600026	STK32B	Q9NY57	414 aa		28.53	■■■□□ 2.16
LTBP4-227	ENST00000600026	AKT1S1	Q96B36	256 aa		28.52	■■■□□ 2.16
LTBP4-227	ENST00000600026	HMGB2	P26583	209 aa	Known RBP	28.51	■■■□□ 2.15
LTBP4-227	ENST00000600026	R3HDM1	Q15032	1099 aa	Known RBP	28.51	■■■□□ 2.15
LTBP4-227	ENST00000600026	SLC15A2	Q16348	729 aa		28.5	■■■□□ 2.15
LTBP4-227	ENST00000600026	CNTNAP4	Q9C0A0	1308 aa		28.49	■■■□□ 2.15
LTBP4-227	ENST00000600026	PRAMEF22	A3QJZ6	481 aa		28.49	■■■□□ 2.15
LTBP4-227	ENST00000600026		E9PSI1	815 aa		28.48	■■■□□ 2.15
LTBP4-227	ENST00000600026	SNRPA1	P09661	255 aa	Known RBP	28.48	■■■□□ 2.15
LTBP4-227	ENST00000600026	AK7	Q96M32	723 aa		28.48	■■■□□ 2.15

Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms