RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 REC8O95072 547 aa11.99□□□□□ -0.49
LIG3-216ENST00000593099 CALRP27797 417 aaKnown RBP11.99□□□□□ -0.49
LIG3-216ENST00000593099 RPAP2Q8IXW5 612 aaPredicted RBP11.99□□□□□ -0.49
LIG3-216ENST00000593099 RTCBQ9Y3I0 505 aaKnown RBP11.98□□□□□ -0.49
LIG3-216ENST00000593099 PTPRCP08575 1304 aa11.98□□□□□ -0.49
LIG3-216ENST00000593099 TFCP2L1Q9NZI6 479 aa11.98□□□□□ -0.49
LIG3-216ENST00000593099 TTC39AQ5SRH9 613 aa11.98□□□□□ -0.49
LIG3-216ENST00000593099 ANKRD13DQ6ZTN6 518 aa11.98□□□□□ -0.49
LIG3-216ENST00000593099 RPGRQ92834 1020 aaKnown RBP11.98□□□□□ -0.49
LIG3-216ENST00000593099 KDM4FA0A1W2PPD8 638 aa11.98□□□□□ -0.49
LIG3-216ENST00000593099 F6X3S4 739 aa11.98□□□□□ -0.49
LIG3-216ENST00000593099 ZKSCAN1P17029 563 aaPredicted RBP11.98□□□□□ -0.49
LIG3-216ENST00000593099 TMEM57Q8N5G2 664 aa11.98□□□□□ -0.49
LIG3-216ENST00000593099 SPATA31A3Q5VYP0 1347 aa11.97□□□□□ -0.49
LIG3-216ENST00000593099 SPHKAPQ2M3C7 1700 aa11.97□□□□□ -0.49
LIG3-216ENST00000593099 TPRNQ4KMQ1 711 aa11.97□□□□□ -0.49
LIG3-216ENST00000593099 NKTRP30414 1462 aaKnown RBP11.97□□□□□ -0.49
LIG3-216ENST00000593099 ALKQ9UM73 1620 aa11.97□□□□□ -0.49
LIG3-216ENST00000593099 GOLGA6L4A6NEF3 574 aa11.97□□□□□ -0.49
LIG3-216ENST00000593099 TRDNQ13061 729 aa11.97□□□□□ -0.49
LIG3-216ENST00000593099 CWC25Q9NXE8 425 aaPredicted RBP11.97□□□□□ -0.49
LIG3-216ENST00000593099 ANXA1P04083 346 aa11.96□□□□□ -0.49
LIG3-216ENST00000593099 PRIM1P49642 420 aaKnown RBP11.96□□□□□ -0.49
LIG3-216ENST00000593099 FSD1Q9BTV5 496 aa11.96□□□□□ -0.49
LIG3-216ENST00000593099 MAP3K2Q9Y2U5 619 aa11.96□□□□□ -0.49
LIG3-216ENST00000593099 INSRP06213 1382 aa11.96□□□□□ -0.49
LIG3-216ENST00000593099 PI4KAP2A4QPH2 592 aa11.96□□□□□ -0.49
LIG3-216ENST00000593099 IFIT5Q13325 482 aaKnown RBP11.96□□□□□ -0.49
LIG3-216ENST00000593099 NBPF5PQ86XG9 351 aaPredicted RBP11.96□□□□□ -0.49
LIG3-216ENST00000593099 PI4KAP1Q8N8J0 262 aa11.96□□□□□ -0.49
LIG3-216ENST00000593099 CHMP4CQ96CF2 233 aa11.96□□□□□ -0.49
LIG3-216ENST00000593099 LRRCC1Q9C099 1032 aa11.96□□□□□ -0.49
LIG3-216ENST00000593099 RNF20Q5VTR2 975 aa11.96□□□□□ -0.49
LIG3-216ENST00000593099 SYNE3Q6ZMZ3 975 aa11.96□□□□□ -0.49
LIG3-216ENST00000593099 CNTROBQ8N137 903 aa11.96□□□□□ -0.49
LIG3-216ENST00000593099 XAGE3Q8WTP9 111 aa11.96□□□□□ -0.49
LIG3-216ENST00000593099 DNAJC2Q99543 621 aaKnown RBP11.96□□□□□ -0.49
LIG3-216ENST00000593099 CARD10Q9BWT7 1032 aa11.96□□□□□ -0.49
LIG3-216ENST00000593099 CCNL1Q9UK58 526 aaPredicted RBP11.96□□□□□ -0.49
LIG3-216ENST00000593099 STK32BQ9NY57 414 aa11.96□□□□□ -0.5
LIG3-216ENST00000593099 PPRC1Q5VV67 1664 aaKnown RBP11.96□□□□□ -0.5
LIG3-216ENST00000593099 RXRBP28702 533 aa11.95□□□□□ -0.5
LIG3-216ENST00000593099 BAG6P46379 1132 aa11.95□□□□□ -0.5
LIG3-216ENST00000593099 COPS6Q7L5N1 327 aa11.95□□□□□ -0.5
LIG3-216ENST00000593099 SETDB2Q96T68 719 aa11.95□□□□□ -0.5
LIG3-216ENST00000593099 RIMS1Q86UR5 1692 aaKnown RBP11.95□□□□□ -0.5
LIG3-216ENST00000593099 ST18O60284 1047 aa11.95□□□□□ -0.5
LIG3-216ENST00000593099 METTL24Q5JXM2 366 aa11.95□□□□□ -0.5
LIG3-216ENST00000593099 CHPF2Q9P2E5 772 aa11.95□□□□□ -0.5
LIG3-216ENST00000593099 ATP5J2-PTCD1G3V325 749 aa11.95□□□□□ -0.5
LIG3-216ENST00000593099 FAM161AQ3B820 660 aa11.95□□□□□ -0.5
LIG3-216ENST00000593099 ST5P78524 1137 aa11.95□□□□□ -0.5
LIG3-216ENST00000593099 ANO2Q9NQ90 1003 aa11.95□□□□□ -0.5
LIG3-216ENST00000593099 KIF3AQ9Y496 699 aa11.95□□□□□ -0.5
LIG3-216ENST00000593099 INTS3Q68E01 1043 aaKnown RBP11.94□□□□□ -0.5
LIG3-216ENST00000593099 BABAM1Q9NWV8 329 aa11.94□□□□□ -0.5
LIG3-216ENST00000593099 KDM5AP29375 1690 aaKnown RBP11.94□□□□□ -0.5
LIG3-216ENST00000593099 ANKRD18BA2A2Z9 1011 aa11.94□□□□□ -0.5
LIG3-216ENST00000593099 E9PCH4 1651 aa11.94□□□□□ -0.5
LIG3-216ENST00000593099 POLD1P28340 1107 aa11.93□□□□□ -0.5
LIG3-216ENST00000593099 DDX46Q7L014 1031 aaKnown RBP11.93□□□□□ -0.5
LIG3-216ENST00000593099 DZIP3Q86Y13 1208 aaKnown RBP11.93□□□□□ -0.5
LIG3-216ENST00000593099 CDC5LQ99459 802 aaKnown RBP11.93□□□□□ -0.5
LIG3-216ENST00000593099 AATKQ6ZMQ8 1374 aa11.93□□□□□ -0.5
LIG3-216ENST00000593099 IFIT1P09914 478 aaKnown RBP11.93□□□□□ -0.5
LIG3-216ENST00000593099 ZNF790Q6PG37 636 aa11.93□□□□□ -0.5
LIG3-216ENST00000593099 CPLX2Q6PUV4 134 aaKnown RBP11.93□□□□□ -0.5
LIG3-216ENST00000593099 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.93□□□□□ -0.59e-7■□□□□ 9.1
LIG3-216ENST00000593099 ZC3H13Q5T200 1668 aaKnown RBP11.93□□□□□ -0.5
LIG3-216ENST00000593099 RAD21O60216 631 aa11.93□□□□□ -0.5
LIG3-216ENST00000593099 AKAP2Q9Y2D5 859 aa11.93□□□□□ -0.5
LIG3-216ENST00000593099 CTDP1Q9Y5B0 961 aaPredicted RBP11.93□□□□□ -0.5
LIG3-216ENST00000593099 WDR17Q8IZU2 1322 aa11.93□□□□□ -0.5
LIG3-216ENST00000593099 SETD1BQ9UPS6 1966 aaKnown RBP11.93□□□□□ -0.5
LIG3-216ENST00000593099 APBA3O96018 575 aa11.93□□□□□ -0.5
LIG3-216ENST00000593099 AACSQ86V21 672 aa11.93□□□□□ -0.5
LIG3-216ENST00000593099 UNC5CLQ8IV45 518 aa11.93□□□□□ -0.5
LIG3-216ENST00000593099 HIP1O00291 1037 aa11.92□□□□□ -0.5
LIG3-216ENST00000593099 GNPATO15228 680 aa11.92□□□□□ -0.5
LIG3-216ENST00000593099 NOL8Q76FK4 1167 aaKnown RBP11.92□□□□□ -0.5
LIG3-216ENST00000593099 UBE3BQ7Z3V4 1068 aa11.92□□□□□ -0.5
LIG3-216ENST00000593099 HOMEZQ8IX15 550 aa11.92□□□□□ -0.5
LIG3-216ENST00000593099 SLC52A2Q9HAB3 445 aa11.92□□□□□ -0.5
LIG3-216ENST00000593099 ERVV-2B6SEH9 535 aa11.92□□□□□ -0.5
LIG3-216ENST00000593099 C8orf58Q8NAV2 365 aa11.92□□□□□ -0.5
LIG3-216ENST00000593099 SPRYD3Q8NCJ5 442 aa11.92□□□□□ -0.5
LIG3-216ENST00000593099 ANKIB1Q9P2G1 1089 aa11.92□□□□□ -0.5
LIG3-216ENST00000593099 AKAP17AQ02040 695 aaKnown RBP11.92□□□□□ -0.5
LIG3-216ENST00000593099 TRAPPC3LQ5T215 181 aa11.92□□□□□ -0.5
LIG3-216ENST00000593099 NIP7Q9Y221 180 aaKnown RBP eCLIP11.92□□□□□ -0.5
LIG3-216ENST00000593099 SOS1Q07889 1333 aaPredicted RBP11.92□□□□□ -0.5
LIG3-216ENST00000593099 RTL1A6NKG5 1358 aa11.92□□□□□ -0.5
LIG3-216ENST00000593099 ZNF622Q969S3 477 aaKnown RBP eCLIP11.91□□□□□ -0.5
LIG3-216ENST00000593099 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.91□□□□□ -0.5
LIG3-216ENST00000593099 CEP170BQ9Y4F5 1589 aaPredicted RBP11.91□□□□□ -0.5
LIG3-216ENST00000593099 KSR2Q6VAB6 950 aa11.91□□□□□ -0.5
LIG3-216ENST00000593099 LGR6Q9HBX8 967 aa11.91□□□□□ -0.5
LIG3-216ENST00000593099 PDZRN3Q9UPQ7 1066 aa11.91□□□□□ -0.5
LIG3-216ENST00000593099 RALYLQ86SE5 291 aaKnown RBP11.91□□□□□ -0.5
LIG3-216ENST00000593099 PTCH1Q13635 1447 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms