RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 NBPF4Q96M43 638 aa7.96□□□□□ -1.14
LIG3-206ENST00000586058 CFAP44Q96MT7 982 aa7.96□□□□□ -1.14
LIG3-206ENST00000586058 PHF12Q96QT6 1004 aa7.96□□□□□ -1.14
LIG3-206ENST00000586058 KAT6BQ8WYB5 2073 aa7.96□□□□□ -1.14
LIG3-206ENST00000586058 UBR2Q8IWV8 1755 aa7.95□□□□□ -1.14
LIG3-206ENST00000586058 MEGF6O75095 1541 aa7.95□□□□□ -1.14
LIG3-206ENST00000586058 HSP90AB1P08238 724 aaKnown RBP7.95□□□□□ -1.14
LIG3-206ENST00000586058 MTHFSDQ2M296 383 aaKnown RBP7.95□□□□□ -1.14
LIG3-206ENST00000586058 AKAP4Q5JQC9 854 aa7.95□□□□□ -1.14
LIG3-206ENST00000586058 CERKQ8TCT0 537 aa7.95□□□□□ -1.14
LIG3-206ENST00000586058 STRN4Q9NRL3 753 aa7.95□□□□□ -1.14
LIG3-206ENST00000586058 PCDH11XQ9BZA7 1347 aa7.95□□□□□ -1.14
LIG3-206ENST00000586058 PCDH11YQ9BZA8 1340 aa7.95□□□□□ -1.14
LIG3-206ENST00000586058 LRP6O75581 1613 aa7.95□□□□□ -1.14
LIG3-206ENST00000586058 PAPPAQ13219 1627 aa7.95□□□□□ -1.14
LIG3-206ENST00000586058 C5P01031 1676 aa7.95□□□□□ -1.14
LIG3-206ENST00000586058 IRX6P78412 446 aaPredicted RBP7.94□□□□□ -1.14
LIG3-206ENST00000586058 MCM10Q7L590 875 aa7.94□□□□□ -1.14
LIG3-206ENST00000586058 FTSJ3Q8IY81 847 aaKnown RBP7.94□□□□□ -1.14
LIG3-206ENST00000586058 TSR2Q969E8 191 aaKnown RBP7.94□□□□□ -1.14
LIG3-206ENST00000586058 RTN4Q9NQC3 1192 aaKnown RBP7.94□□□□□ -1.14
LIG3-206ENST00000586058 SMC4Q9NTJ3 1288 aa7.94□□□□□ -1.14
LIG3-206ENST00000586058 BABAM1Q9NWV8 329 aa7.94□□□□□ -1.14
LIG3-206ENST00000586058 TSPYL4Q9UJ04 414 aa7.94□□□□□ -1.14
LIG3-206ENST00000586058 SOS1Q07889 1333 aaPredicted RBP7.94□□□□□ -1.14
LIG3-206ENST00000586058 AFDNP55196 1824 aaKnown RBP7.94□□□□□ -1.14
LIG3-206ENST00000586058 MRC1P22897 1456 aa7.94□□□□□ -1.14
LIG3-206ENST00000586058 TOGARAM1Q9Y4F4 1720 aa7.93□□□□□ -1.14
LIG3-206ENST00000586058 FAM83GA6ND36 823 aa7.93□□□□□ -1.14
LIG3-206ENST00000586058 IPO8O15397 1037 aaKnown RBP7.93□□□□□ -1.14
LIG3-206ENST00000586058 IL2RBP14784 551 aa7.93□□□□□ -1.14
LIG3-206ENST00000586058 EXOSC9Q06265 439 aaKnown RBP7.93□□□□□ -1.14
LIG3-206ENST00000586058 ALDH1L2Q3SY69 923 aa7.93□□□□□ -1.14
LIG3-206ENST00000586058 IFNL2Q8IZJ0 200 aa7.93□□□□□ -1.14
LIG3-206ENST00000586058 MBIPQ9NS73 344 aa7.93□□□□□ -1.14
LIG3-206ENST00000586058 PPP4R2Q9NY27 417 aa7.93□□□□□ -1.14
LIG3-206ENST00000586058 BTG4Q9NY30 223 aa7.93□□□□□ -1.14
LIG3-206ENST00000586058 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.93□□□□□ -1.14
LIG3-206ENST00000586058 AXIN2Q9Y2T1 843 aa7.93□□□□□ -1.14
LIG3-206ENST00000586058 SPATA31A6Q5VVP1 1343 aa7.93□□□□□ -1.14
LIG3-206ENST00000586058 RNF123Q5XPI4 1314 aa7.93□□□□□ -1.14
LIG3-206ENST00000586058 NUTM2BA6NNL0 878 aaPredicted RBP7.92□□□□□ -1.14
LIG3-206ENST00000586058 NUTM2EB1AL46 878 aaPredicted RBP7.92□□□□□ -1.14
LIG3-206ENST00000586058 DCTN1Q14203 1278 aa7.92□□□□□ -1.14
LIG3-206ENST00000586058 TWISTNBQ3B726 338 aaPredicted RBP7.92□□□□□ -1.14
LIG3-206ENST00000586058 MEX3CQ5U5Q3 659 aaKnown RBP7.92□□□□□ -1.14
LIG3-206ENST00000586058 NUTM2AQ8IVF1 878 aaPredicted RBP7.92□□□□□ -1.14
LIG3-206ENST00000586058 FRAT1Q92837 279 aaPredicted RBP7.92□□□□□ -1.14
LIG3-206ENST00000586058 THUMPD2Q9BTF0 503 aaKnown RBP7.92□□□□□ -1.14
LIG3-206ENST00000586058 CARD10Q9BWT7 1032 aa7.92□□□□□ -1.14
LIG3-206ENST00000586058 STK31Q9BXU1 1019 aa7.92□□□□□ -1.14
LIG3-206ENST00000586058 CHMP4BQ9H444 224 aaKnown RBP7.92□□□□□ -1.14
LIG3-206ENST00000586058 ADAMTS2O95450 1211 aa7.91□□□□□ -1.14
LIG3-206ENST00000586058 ZKSCAN2Q63HK3 967 aa7.91□□□□□ -1.14
LIG3-206ENST00000586058 CDCA7Q9BWT1 371 aaPredicted RBP7.91□□□□□ -1.14
LIG3-206ENST00000586058 CCDC9Q9Y3X0 531 aaKnown RBP7.91□□□□□ -1.14
LIG3-206ENST00000586058 CEMIPQ8WUJ3 1361 aa7.91□□□□□ -1.14
LIG3-206ENST00000586058 TNS2Q63HR2 1409 aa7.91□□□□□ -1.14
LIG3-206ENST00000586058 ZNF853P0CG23 659 aa7.9□□□□□ -1.14
LIG3-206ENST00000586058 RARSP54136 660 aaKnown RBP7.9□□□□□ -1.14
LIG3-206ENST00000586058 AAMPQ13685 434 aa7.9□□□□□ -1.14
LIG3-206ENST00000586058 TAF7Q15545 349 aaPredicted RBP7.9□□□□□ -1.14
LIG3-206ENST00000586058 TTC5Q8N0Z6 440 aa7.9□□□□□ -1.14
LIG3-206ENST00000586058 DCAF5Q96JK2 942 aa7.9□□□□□ -1.14
LIG3-206ENST00000586058 CCDC136Q96JN2 1154 aa7.9□□□□□ -1.14
LIG3-206ENST00000586058 USP35Q9P2H5 1018 aa7.9□□□□□ -1.14
LIG3-206ENST00000586058 SLIT2O94813 1529 aa7.89□□□□□ -1.15
LIG3-206ENST00000586058 BTBD11A6QL63 1104 aa7.89□□□□□ -1.15
LIG3-206ENST00000586058 CHL1O00533 1208 aa7.89□□□□□ -1.15
LIG3-206ENST00000586058 RNMTO43148 476 aaKnown RBP7.89□□□□□ -1.15
LIG3-206ENST00000586058 PDE3AQ14432 1141 aa7.89□□□□□ -1.15
LIG3-206ENST00000586058 ZCRB1Q8TBF4 217 aaKnown RBP7.89□□□□□ -1.15
LIG3-206ENST00000586058 BCL2L13Q9BXK5 485 aa7.89□□□□□ -1.15
LIG3-206ENST00000586058 THRAP3Q9Y2W1 955 aaKnown RBP7.89□□□□□ -1.15
LIG3-206ENST00000586058 ARFGEF2Q9Y6D5 1785 aa7.89□□□□□ -1.15
LIG3-206ENST00000586058 BCAR3O75815 825 aa7.88□□□□□ -1.15
LIG3-206ENST00000586058 HOXB7P09629 217 aa7.88□□□□□ -1.15
LIG3-206ENST00000586058 PHKG2P15735 406 aa7.88□□□□□ -1.15
LIG3-206ENST00000586058 CCDC30Q5VVM6 783 aa7.88□□□□□ -1.15
LIG3-206ENST00000586058 LARP1Q6PKG0 1096 aaKnown RBP7.88□□□□□ -1.15
LIG3-206ENST00000586058 MPRIPQ6WCQ1 1025 aa7.88□□□□□ -1.15
LIG3-206ENST00000586058 C8orf37Q96NL8 207 aa7.88□□□□□ -1.15
LIG3-206ENST00000586058 PXDNLA1KZ92 1463 aa7.87□□□□□ -1.15
LIG3-206ENST00000586058 KDM6AO15550 1401 aaPredicted RBP7.87□□□□□ -1.15
LIG3-206ENST00000586058 SBF2Q86WG5 1849 aa7.87□□□□□ -1.15
LIG3-206ENST00000586058 ANKRD36CQ5JPF3 1778 aa7.87□□□□□ -1.15
LIG3-206ENST00000586058 PTPRCP08575 1304 aa7.87□□□□□ -1.15
LIG3-206ENST00000586058 NHSQ6T4R5 1651 aa7.87□□□□□ -1.15
LIG3-206ENST00000586058 THSD7AQ9UPZ6 1657 aa7.87□□□□□ -1.15
LIG3-206ENST00000586058 A0A0G2JS52 829 aa7.87□□□□□ -1.15
LIG3-206ENST00000586058 ELL2O00472 640 aaPredicted RBP7.87□□□□□ -1.15
LIG3-206ENST00000586058 PLIN1O60240 522 aa7.87□□□□□ -1.15
LIG3-206ENST00000586058 CABP4P57796 275 aa7.87□□□□□ -1.15
LIG3-206ENST00000586058 MYT1Q01538 1121 aa7.87□□□□□ -1.15
LIG3-206ENST00000586058 DZIP1LQ8IYY4 767 aaKnown RBP7.87□□□□□ -1.15
LIG3-206ENST00000586058 NGLY1Q96IV0 654 aa7.87□□□□□ -1.15
LIG3-206ENST00000586058 API5Q9BZZ5 524 aaKnown RBP7.87□□□□□ -1.15
LIG3-206ENST00000586058 DISP2A7MBM2 1401 aa7.86□□□□□ -1.15
LIG3-206ENST00000586058 CICQ96RK0 1608 aaPredicted RBP7.86□□□□□ -1.15
LIG3-206ENST00000586058 EXOC5O00471 708 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms