RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 PTGER2P43116 358 aa13.4□□□□□ -0.26
LIG3-203ENST00000585370 PDE3AQ14432 1141 aa13.4□□□□□ -0.26
LIG3-203ENST00000585370 GAS2L2Q8NHY3 880 aa13.4□□□□□ -0.26
LIG3-203ENST00000585370 LTV1Q96GA3 475 aaPredicted RBP13.4□□□□□ -0.26
LIG3-203ENST00000585370 EYA1Q99502 592 aa13.4□□□□□ -0.26
LIG3-203ENST00000585370 IFT57Q9NWB7 429 aa13.4□□□□□ -0.26
LIG3-203ENST00000585370 GOLGB1Q14789 3259 aaKnown RBP13.39□□□□□ -0.27
LIG3-203ENST00000585370 MS4A1P11836 297 aa13.39□□□□□ -0.27
LIG3-203ENST00000585370 RARSP54136 660 aaKnown RBP13.39□□□□□ -0.27
LIG3-203ENST00000585370 ATF5Q9Y2D1 282 aaPredicted RBP13.39□□□□□ -0.27
LIG3-203ENST00000585370 FANCIQ9NVI1 1328 aa13.39□□□□□ -0.27
LIG3-203ENST00000585370 NHSQ6T4R5 1651 aa13.38□□□□□ -0.27
LIG3-203ENST00000585370 AAMPQ13685 434 aa13.38□□□□□ -0.27
LIG3-203ENST00000585370 AEBP1Q8IUX7 1158 aa13.38□□□□□ -0.27
LIG3-203ENST00000585370 DDX54Q8TDD1 881 aaKnown RBP13.38□□□□□ -0.27
LIG3-203ENST00000585370 CCDC136Q96JN2 1154 aa13.38□□□□□ -0.27
LIG3-203ENST00000585370 CFAP44Q96MT7 982 aa13.38□□□□□ -0.27
LIG3-203ENST00000585370 ZNF853P0CG23 659 aa13.37□□□□□ -0.27
LIG3-203ENST00000585370 YY1P25490 414 aa13.37□□□□□ -0.27
LIG3-203ENST00000585370 LRRC4BQ9NT99 713 aa13.37□□□□□ -0.27
LIG3-203ENST00000585370 PLIN1O60240 522 aa13.36□□□□□ -0.27
LIG3-203ENST00000585370 EXOSC9Q06265 439 aaKnown RBP13.36□□□□□ -0.27
LIG3-203ENST00000585370 ALDH1L2Q3SY69 923 aa13.36□□□□□ -0.27
LIG3-203ENST00000585370 BCAR3O75815 825 aa13.35□□□□□ -0.27
LIG3-203ENST00000585370 EXOC6Q8TAG9 804 aa13.35□□□□□ -0.27
LIG3-203ENST00000585370 RTF1Q92541 710 aaKnown RBP13.35□□□□□ -0.27
LIG3-203ENST00000585370 SGIP1Q9BQI5 828 aa13.35□□□□□ -0.27
LIG3-203ENST00000585370 MTFR1LQ9H019 292 aa13.35□□□□□ -0.27
LIG3-203ENST00000585370 BTAF1O14981 1849 aa13.34□□□□□ -0.27
LIG3-203ENST00000585370 DCAF8L1A6NGE4 600 aa13.34□□□□□ -0.27
LIG3-203ENST00000585370 CANXP27824 592 aaKnown RBP13.34□□□□□ -0.27
LIG3-203ENST00000585370 BRPF1P55201 1214 aaPredicted RBP13.34□□□□□ -0.27
LIG3-203ENST00000585370 ZNF827Q17R98 1081 aa13.34□□□□□ -0.27
LIG3-203ENST00000585370 IPO8O15397 1037 aaKnown RBP13.33□□□□□ -0.28
LIG3-203ENST00000585370 PRIM1P49642 420 aaKnown RBP13.33□□□□□ -0.28
LIG3-203ENST00000585370 MTHFSDQ2M296 383 aaKnown RBP13.33□□□□□ -0.28
LIG3-203ENST00000585370 NBPF6Q5VWK0 638 aa13.33□□□□□ -0.28
LIG3-203ENST00000585370 B4GALNT3Q6L9W6 998 aa13.33□□□□□ -0.28
LIG3-203ENST00000585370 TSR2Q969E8 191 aaKnown RBP13.33□□□□□ -0.28
LIG3-203ENST00000585370 NBPF4Q96M43 638 aa13.33□□□□□ -0.28
LIG3-203ENST00000585370 SYT17Q9BSW7 474 aa13.33□□□□□ -0.28
LIG3-203ENST00000585370 FHDC1Q9C0D6 1143 aaPredicted RBP13.33□□□□□ -0.28
LIG3-203ENST00000585370 BABAM1Q9NWV8 329 aa13.33□□□□□ -0.28
LIG3-203ENST00000585370 PAPPAQ13219 1627 aa13.32□□□□□ -0.28
LIG3-203ENST00000585370 CHL1O00533 1208 aa13.32□□□□□ -0.28
LIG3-203ENST00000585370 AMOTQ4VCS5 1084 aa13.32□□□□□ -0.28
LIG3-203ENST00000585370 ZCRB1Q8TBF4 217 aaKnown RBP13.32□□□□□ -0.28
LIG3-203ENST00000585370 AKT1S1Q96B36 256 aa13.32□□□□□ -0.28
LIG3-203ENST00000585370 CRBNQ96SW2 442 aa13.32□□□□□ -0.28
LIG3-203ENST00000585370 LAS1LQ9Y4W2 734 aaKnown RBP13.32□□□□□ -0.28
LIG3-203ENST00000585370 RGPD2P0DJD1 1756 aa13.31□□□□□ -0.28
LIG3-203ENST00000585370 GNAT3A8MTJ3 354 aa13.31□□□□□ -0.28
LIG3-203ENST00000585370 KCNQ4P56696 695 aa13.31□□□□□ -0.28
LIG3-203ENST00000585370 PLEKHO1Q53GL0 409 aaPredicted RBP13.31□□□□□ -0.28
LIG3-203ENST00000585370 SLC27A3Q5K4L6 730 aa13.31□□□□□ -0.28
LIG3-203ENST00000585370 ZKSCAN2Q63HK3 967 aa13.31□□□□□ -0.28
LIG3-203ENST00000585370 SYTL4Q96C24 671 aaPredicted RBP13.31□□□□□ -0.28
LIG3-203ENST00000585370 MBIPQ9NS73 344 aa13.31□□□□□ -0.28
LIG3-203ENST00000585370 PLEKHG2Q9H7P9 1386 aa13.31□□□□□ -0.28
LIG3-203ENST00000585370 FAM208AQ9UK61 1670 aaKnown RBP13.31□□□□□ -0.28
LIG3-203ENST00000585370 MEGF6O75095 1541 aa13.3□□□□□ -0.28
LIG3-203ENST00000585370 USHBP1Q8N6Y0 703 aa13.3□□□□□ -0.28
LIG3-203ENST00000585370 KIF16BQ96L93 1317 aa13.3□□□□□ -0.28
LIG3-203ENST00000585370 VAMP4O75379 141 aa13.29□□□□□ -0.28
LIG3-203ENST00000585370 C20orf194Q5TEA3 1177 aa13.29□□□□□ -0.28
LIG3-203ENST00000585370 ARXQ96QS3 562 aa13.29□□□□□ -0.28
LIG3-203ENST00000585370 THUMPD2Q9BTF0 503 aaKnown RBP13.29□□□□□ -0.28
LIG3-203ENST00000585370 SMC4Q9NTJ3 1288 aa13.29□□□□□ -0.28
LIG3-203ENST00000585370 NCAPD2Q15021 1401 aa13.29□□□□□ -0.28
LIG3-203ENST00000585370 SSH1Q8WYL5 1049 aa13.28□□□□□ -0.28
LIG3-203ENST00000585370 ARHGAP45Q92619 1136 aa13.28□□□□□ -0.28
LIG3-203ENST00000585370 FRAT1Q92837 279 aaPredicted RBP13.28□□□□□ -0.28
LIG3-203ENST00000585370 CHMP4AQ9BY43 222 aa13.28□□□□□ -0.28
LIG3-203ENST00000585370 DLG5Q8TDM6 1919 aa13.28□□□□□ -0.28
LIG3-203ENST00000585370 SOS1Q07889 1333 aaPredicted RBP13.28□□□□□ -0.28
LIG3-203ENST00000585370 SHANK3Q9BYB0 1731 aa13.27□□□□□ -0.28
LIG3-203ENST00000585370 DCTN1Q14203 1278 aa13.27□□□□□ -0.29
LIG3-203ENST00000585370 TWISTNBQ3B726 338 aaPredicted RBP13.27□□□□□ -0.29
LIG3-203ENST00000585370 MCM10Q7L590 875 aa13.27□□□□□ -0.29
LIG3-203ENST00000585370 DZIP1LQ8IYY4 767 aaKnown RBP13.27□□□□□ -0.29
LIG3-203ENST00000585370 CHMP4BQ9H444 224 aaKnown RBP13.27□□□□□ -0.29
LIG3-203ENST00000585370 PNPLA7Q6ZV29 1317 aa13.27□□□□□ -0.29
LIG3-203ENST00000585370 MAP3K5Q99683 1374 aa13.27□□□□□ -0.29
LIG3-203ENST00000585370 AKAP4Q5JQC9 854 aa13.26□□□□□ -0.29
LIG3-203ENST00000585370 SLC16A10Q8TF71 515 aa13.26□□□□□ -0.29
LIG3-203ENST00000585370 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.26□□□□□ -0.29
LIG3-203ENST00000585370 TFCP2L1Q9NZI6 479 aa13.26□□□□□ -0.29
LIG3-203ENST00000585370 DOT1LQ8TEK3 1739 aa13.25□□□□□ -0.29
LIG3-203ENST00000585370 TAF7Q15545 349 aaPredicted RBP13.25□□□□□ -0.29
LIG3-203ENST00000585370 ATF7IPQ6VMQ6 1270 aa13.25□□□□□ -0.29
LIG3-203ENST00000585370 RAPGEF4Q8WZA2 1011 aa13.25□□□□□ -0.29
LIG3-203ENST00000585370 TATP17735 454 aaPredicted RBP13.24□□□□□ -0.29
LIG3-203ENST00000585370 FTSJ3Q8IY81 847 aaKnown RBP13.24□□□□□ -0.29
LIG3-203ENST00000585370 CCNL1Q9UK58 526 aaPredicted RBP13.24□□□□□ -0.29
LIG3-203ENST00000585370 LY75O60449 1722 aa13.24□□□□□ -0.29
LIG3-203ENST00000585370 C1orf141Q5JVX7 400 aa13.23□□□□□ -0.29
LIG3-203ENST00000585370 CENPQQ7L2Z9 268 aaPredicted RBP13.23□□□□□ -0.29
LIG3-203ENST00000585370 MRPL50Q8N5N7 158 aaKnown RBP13.23□□□□□ -0.29
LIG3-203ENST00000585370 C8orf58Q8NAV2 365 aa13.23□□□□□ -0.29
LIG3-203ENST00000585370 IL17REQ8NFR9 667 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms