RNA–Protein interactions for RNA: ENST00000580654.5

SMARCE1-217, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 5

Gene SMARCE1, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-217ENST00000580654 USP31Q70CQ4 1352 aa11.2□□□□□ -0.62
SMARCE1-217ENST00000580654 RBM46Q8TBY0 533 aaKnown RBP11.2□□□□□ -0.62
SMARCE1-217ENST00000580654 C4BP0C0L5 1744 aa11.2□□□□□ -0.62
SMARCE1-217ENST00000580654 RAB3GAP2Q9H2M9 1393 aa11.19□□□□□ -0.62
SMARCE1-217ENST00000580654 MNX1P50219 401 aaPredicted RBP11.19□□□□□ -0.62
SMARCE1-217ENST00000580654 FAM163AQ96GL9 167 aaPredicted RBP11.19□□□□□ -0.62
SMARCE1-217ENST00000580654 SCUBE2Q9NQ36 999 aa11.19□□□□□ -0.62
SMARCE1-217ENST00000580654 SMIM5Q71RC9 77 aa11.18□□□□□ -0.62
SMARCE1-217ENST00000580654 BRCA1P38398 1863 aaKnown RBP11.18□□□□□ -0.62
SMARCE1-217ENST00000580654 PKD1L3Q7Z443 1732 aa11.18□□□□□ -0.62
SMARCE1-217ENST00000580654 KTN1Q86UP2 1357 aaKnown RBP11.17□□□□□ -0.62
SMARCE1-217ENST00000580654 USP47Q96K76 1375 aa11.17□□□□□ -0.62
SMARCE1-217ENST00000580654 SLC24A1O60721 1099 aa11.17□□□□□ -0.62
SMARCE1-217ENST00000580654 MEGF6O75095 1541 aa11.17□□□□□ -0.62
SMARCE1-217ENST00000580654 PXDNLA1KZ92 1463 aa11.17□□□□□ -0.62
SMARCE1-217ENST00000580654 EVC2Q86UK5 1308 aa11.16□□□□□ -0.62
SMARCE1-217ENST00000580654 NME9Q86XW9 330 aa11.16□□□□□ -0.62
SMARCE1-217ENST00000580654 FLAD1Q8NFF5 587 aa11.16□□□□□ -0.62
SMARCE1-217ENST00000580654 CD163L1Q9NR16 1453 aa11.15□□□□□ -0.62
SMARCE1-217ENST00000580654 HSPA1AP0DMV8 641 aaKnown RBP11.15□□□□□ -0.62
SMARCE1-217ENST00000580654 HSPA1BP0DMV9 641 aaKnown RBP11.15□□□□□ -0.62
SMARCE1-217ENST00000580654 FSTL1Q12841 308 aa11.15□□□□□ -0.62
SMARCE1-217ENST00000580654 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.15□□□□□ -0.62
SMARCE1-217ENST00000580654 SBNO2Q9Y2G9 1366 aa11.15□□□□□ -0.63
SMARCE1-217ENST00000580654 MAP2P11137 1827 aaKnown RBP11.14□□□□□ -0.63
SMARCE1-217ENST00000580654 ITGB4P16144 1822 aa11.14□□□□□ -0.63
SMARCE1-217ENST00000580654 KCPQ6ZWJ8 1503 aa11.14□□□□□ -0.63
SMARCE1-217ENST00000580654 C10orf71Q711Q0 1435 aa11.13□□□□□ -0.63
SMARCE1-217ENST00000580654 ZCRB1Q8TBF4 217 aaKnown RBP11.13□□□□□ -0.63
SMARCE1-217ENST00000580654 IP6K1Q92551 441 aa11.13□□□□□ -0.63
SMARCE1-217ENST00000580654 LTV1Q96GA3 475 aaPredicted RBP11.13□□□□□ -0.63
SMARCE1-217ENST00000580654 ARFGEF1Q9Y6D6 1849 aa11.13□□□□□ -0.63
SMARCE1-217ENST00000580654 TNRC6CQ9HCJ0 1690 aaKnown RBP11.13□□□□□ -0.63
SMARCE1-217ENST00000580654 PALLDQ8WX93 1383 aa11.13□□□□□ -0.63
SMARCE1-217ENST00000580654 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.12□□□□□ -0.63
SMARCE1-217ENST00000580654 PHF14O94880 888 aa11.12□□□□□ -0.63
SMARCE1-217ENST00000580654 SBF1O95248 1867 aa11.11□□□□□ -0.63
SMARCE1-217ENST00000580654 ARHGAP27Q6ZUM4 889 aa11.11□□□□□ -0.63
SMARCE1-217ENST00000580654 BCS1LQ9Y276 419 aa11.11□□□□□ -0.63
SMARCE1-217ENST00000580654 A0A0G2JLW4 131 aa11.1□□□□□ -0.63
SMARCE1-217ENST00000580654 C9orf131Q5VYM1 1079 aa11.1□□□□□ -0.63
SMARCE1-217ENST00000580654 C16orf71Q8IYS4 520 aaPredicted RBP11.1□□□□□ -0.63
SMARCE1-217ENST00000580654 AK7Q96M32 723 aa11.1□□□□□ -0.63
SMARCE1-217ENST00000580654 PLEKHG2Q9H7P9 1386 aa11.09□□□□□ -0.63
SMARCE1-217ENST00000580654 ATN1P54259 1190 aaPredicted RBP11.09□□□□□ -0.63
SMARCE1-217ENST00000580654 RRAGCQ9HB90 399 aa11.09□□□□□ -0.63
SMARCE1-217ENST00000580654 MMP10P09238 476 aa11.08□□□□□ -0.64
SMARCE1-217ENST00000580654 SSFA2P28290 1259 aa11.08□□□□□ -0.64
SMARCE1-217ENST00000580654 TGFB2P61812 414 aa11.08□□□□□ -0.64
SMARCE1-217ENST00000580654 LINC00116Q8NCU8 138 aa11.08□□□□□ -0.64
SMARCE1-217ENST00000580654 NSD3Q9BZ95 1437 aa11.08□□□□□ -0.64
SMARCE1-217ENST00000580654 C4AP0C0L4 1744 aa11.07□□□□□ -0.64
SMARCE1-217ENST00000580654 SPDYE4A6NLX3 237 aa11.07□□□□□ -0.64
SMARCE1-217ENST00000580654 DPEP1P16444 411 aa11.07□□□□□ -0.64
SMARCE1-217ENST00000580654 KCNA3P22001 575 aa11.07□□□□□ -0.64
SMARCE1-217ENST00000580654 HOXC9P31274 260 aa11.07□□□□□ -0.64
SMARCE1-217ENST00000580654 MPRIPQ6WCQ1 1025 aa11.07□□□□□ -0.64
SMARCE1-217ENST00000580654 MAP3K19Q56UN5 1328 aa11.07□□□□□ -0.64
SMARCE1-217ENST00000580654 FCHSD2O94868 740 aa11.06□□□□□ -0.64
SMARCE1-217ENST00000580654 FBLN1P23142 703 aa11.06□□□□□ -0.64
SMARCE1-217ENST00000580654 NBPF6Q5VWK0 638 aa11.06□□□□□ -0.64
SMARCE1-217ENST00000580654 SMC1BQ8NDV3 1235 aa11.06□□□□□ -0.64
SMARCE1-217ENST00000580654 NBPF4Q96M43 638 aa11.06□□□□□ -0.64
SMARCE1-217ENST00000580654 EDC4Q6P2E9 1401 aaKnown RBP11.06□□□□□ -0.64
SMARCE1-217ENST00000580654 KDM2BQ8NHM5 1336 aa11.06□□□□□ -0.64
SMARCE1-217ENST00000580654 HMGB2P26583 209 aaKnown RBP11.05□□□□□ -0.64
SMARCE1-217ENST00000580654 USHBP1Q8N6Y0 703 aa11.05□□□□□ -0.64
SMARCE1-217ENST00000580654 ITPK1Q13572 414 aa11.04□□□□□ -0.64
SMARCE1-217ENST00000580654 RNF181Q9P0P0 153 aa11.04□□□□□ -0.64
SMARCE1-217ENST00000580654 CGNL1Q0VF96 1302 aa11.04□□□□□ -0.64
SMARCE1-217ENST00000580654 A0A1W2PP64 1363 aa11.03□□□□□ -0.64
SMARCE1-217ENST00000580654 POTEFA5A3E0 1075 aa11.03□□□□□ -0.64
SMARCE1-217ENST00000580654 GNPATO15228 680 aa11.03□□□□□ -0.64
SMARCE1-217ENST00000580654 CYP27B1O15528 508 aa11.03□□□□□ -0.64
SMARCE1-217ENST00000580654 PIGBQ92521 554 aa11.03□□□□□ -0.64
SMARCE1-217ENST00000580654 SMARCC1Q92922 1105 aaPredicted RBP11.03□□□□□ -0.64
SMARCE1-217ENST00000580654 DCAF5Q96JK2 942 aa11.03□□□□□ -0.64
SMARCE1-217ENST00000580654 SLC12A5Q9H2X9 1139 aa11.03□□□□□ -0.64
SMARCE1-217ENST00000580654 LOC102724428A0A0B4J2F2 783 aa11.02□□□□□ -0.65
SMARCE1-217ENST00000580654 SIK1P57059 783 aa11.02□□□□□ -0.65
SMARCE1-217ENST00000580654 CDAN1Q8IWY9 1227 aa11.02□□□□□ -0.65
SMARCE1-217ENST00000580654 PCDH11XQ9BZA7 1347 aa11.02□□□□□ -0.65
SMARCE1-217ENST00000580654 PCDH11YQ9BZA8 1340 aa11.02□□□□□ -0.65
SMARCE1-217ENST00000580654 FOXN1O15353 648 aa11.01□□□□□ -0.65
SMARCE1-217ENST00000580654 AMPHP49418 695 aa11.01□□□□□ -0.65
SMARCE1-217ENST00000580654 FAM161AQ3B820 660 aa11.01□□□□□ -0.65
SMARCE1-217ENST00000580654 HDGFL2Q7Z4V5 671 aaPredicted RBP11.01□□□□□ -0.65
SMARCE1-217ENST00000580654 CCDC88AQ3V6T2 1871 aa11.01□□□□□ -0.65
SMARCE1-217ENST00000580654 COL5A3P25940 1745 aaPredicted RBP11.01□□□□□ -0.65
SMARCE1-217ENST00000580654 TIAM2Q8IVF5 1701 aa11.01□□□□□ -0.65
SMARCE1-217ENST00000580654 KDM6AO15550 1401 aaPredicted RBP11.01□□□□□ -0.65
SMARCE1-217ENST00000580654 TATP17735 454 aaPredicted RBP11□□□□□ -0.65
SMARCE1-217ENST00000580654 TMC1Q8TDI8 760 aa11□□□□□ -0.65
SMARCE1-217ENST00000580654 RAPGEF4Q8WZA2 1011 aa11□□□□□ -0.65
SMARCE1-217ENST00000580654 BMP2KQ9NSY1 1161 aaPredicted RBP11□□□□□ -0.65
SMARCE1-217ENST00000580654 CCDC87Q9NVE4 849 aa11□□□□□ -0.65
SMARCE1-217ENST00000580654 RTL1A6NKG5 1358 aa11□□□□□ -0.65
SMARCE1-217ENST00000580654 TMF1P82094 1093 aa10.99□□□□□ -0.65
SMARCE1-217ENST00000580654 NLGN1Q8N2Q7 840 aa10.99□□□□□ -0.65
SMARCE1-217ENST00000580654 TSPYL2Q9H2G4 693 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms