RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 LOC102724428A0A0B4J2F2 783 aa25.95■■□□□ 1.74
SS18-209ENST00000578595 RNMTO43148 476 aaKnown RBP25.95■■□□□ 1.74
SS18-209ENST00000578595 SIK1P57059 783 aa25.95■■□□□ 1.74
SS18-209ENST00000578595 NFATC2IPQ8NCF5 419 aa25.95■■□□□ 1.74
SS18-209ENST00000578595 LGR6Q9HBX8 967 aa25.95■■□□□ 1.74
SS18-209ENST00000578595 ADAMTS7Q9UKP4 1686 aa25.94■■□□□ 1.74
SS18-209ENST00000578595 MSH5O43196 834 aa25.94■■□□□ 1.74
SS18-209ENST00000578595 ZBTB7AO95365 584 aa25.94■■□□□ 1.74
SS18-209ENST00000578595 AKT1S1Q96B36 256 aa25.94■■□□□ 1.74
SS18-209ENST00000578595 FCHSD2O94868 740 aa25.93■■□□□ 1.74
SS18-209ENST00000578595 ATP6V1AP38606 617 aa25.93■■□□□ 1.74
SS18-209ENST00000578595 PHACTR3Q96KR7 559 aa25.93■■□□□ 1.74
SS18-209ENST00000578595 SPON1Q9HCB6 807 aa25.93■■□□□ 1.74
SS18-209ENST00000578595 MRC1P22897 1456 aa25.92■■□□□ 1.74
SS18-209ENST00000578595 GNAT3A8MTJ3 354 aa25.92■■□□□ 1.74
SS18-209ENST00000578595 HMGB2P26583 209 aaKnown RBP25.92■■□□□ 1.74
SS18-209ENST00000578595 AK7Q96M32 723 aa25.92■■□□□ 1.74
SS18-209ENST00000578595 SLC52A2Q9HAB3 445 aa25.92■■□□□ 1.74
SS18-209ENST00000578595 UBR3Q6ZT12 1888 aa25.91■■□□□ 1.74
SS18-209ENST00000578595 PPP1R1BQ9UD71 204 aaPredicted RBP25.91■■□□□ 1.74
SS18-209ENST00000578595 COL5A3P25940 1745 aaPredicted RBP25.91■■□□□ 1.74
SS18-209ENST00000578595 SIPA1L3O60292 1781 aaPredicted RBP25.9■■□□□ 1.74
SS18-209ENST00000578595 PTCD1O75127 700 aaKnown RBP25.9■■□□□ 1.74
SS18-209ENST00000578595 PRKRIP1Q9H875 184 aaPredicted RBP25.9■■□□□ 1.74
SS18-209ENST00000578595 ATF5Q9Y2D1 282 aaPredicted RBP25.9■■□□□ 1.74
SS18-209ENST00000578595 TEFQ10587 303 aa25.89■■□□□ 1.74
SS18-209ENST00000578595 ZNF831Q5JPB2 1677 aa25.89■■□□□ 1.73
SS18-209ENST00000578595 PNPLA7Q6ZV29 1317 aa25.88■■□□□ 1.73
SS18-209ENST00000578595 MAPK8IP3Q9UPT6 1336 aa25.88■■□□□ 1.73
SS18-209ENST00000578595 RTF1Q92541 710 aaKnown RBP25.87■■□□□ 1.73
SS18-209ENST00000578595 TJP1Q07157 1748 aa25.86■■□□□ 1.73
SS18-209ENST00000578595 ITPK1Q13572 414 aa25.86■■□□□ 1.73
SS18-209ENST00000578595 WDR43Q15061 677 aaKnown RBP eCLIP25.86■■□□□ 1.73
SS18-209ENST00000578595 LINC00116Q8NCU8 138 aa25.86■■□□□ 1.73
SS18-209ENST00000578595 PNNQ9H307 717 aaKnown RBP25.86■■□□□ 1.73
SS18-209ENST00000578595 SRCAPQ6ZRS2 3230 aa25.85■■□□□ 1.73
SS18-209ENST00000578595 PHF14O94880 888 aa25.85■■□□□ 1.73
SS18-209ENST00000578595 MTFR1LQ9H019 292 aa25.85■■□□□ 1.73
SS18-209ENST00000578595 SLC39A6Q13433 755 aa25.84■■□□□ 1.73
SS18-209ENST00000578595 UBR2Q8IWV8 1755 aa25.84■■□□□ 1.73
SS18-209ENST00000578595 TTC5Q8N0Z6 440 aa25.83■■□□□ 1.73
SS18-209ENST00000578595 MYH14Q7Z406 1995 aaKnown RBP25.82■■□□□ 1.72
SS18-209ENST00000578595 GNPATO15228 680 aa25.82■■□□□ 1.72
SS18-209ENST00000578595 IL17REQ8NFR9 667 aa25.82■■□□□ 1.72
SS18-209ENST00000578595 MCM10Q7L590 875 aa25.81■■□□□ 1.72
SS18-209ENST00000578595 COL23A1Q86Y22 540 aaPredicted RBP25.8■■□□□ 1.72
SS18-209ENST00000578595 SLC4A9Q96Q91 983 aa25.8■■□□□ 1.72
SS18-209ENST00000578595 CICQ96RK0 1608 aaPredicted RBP25.79■■□□□ 1.72
SS18-209ENST00000578595 ANP32CO43423 234 aa25.79■■□□□ 1.72
SS18-209ENST00000578595 FLAD1Q8NFF5 587 aa25.79■■□□□ 1.72
SS18-209ENST00000578595 KCPQ6ZWJ8 1503 aa25.78■■□□□ 1.72
SS18-209ENST00000578595 DCTN1Q14203 1278 aa25.78■■□□□ 1.72
SS18-209ENST00000578595 SMIM5Q71RC9 77 aa25.78■■□□□ 1.72
SS18-209ENST00000578595 SLC16A10Q8TF71 515 aa25.78■■□□□ 1.72
SS18-209ENST00000578595 CCDC146Q8IYE0 955 aa25.77■■□□□ 1.72
SS18-209ENST00000578595 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.76■■□□□ 1.71
SS18-209ENST00000578595 POLD1P28340 1107 aa25.76■■□□□ 1.71
SS18-209ENST00000578595 NFE2L2Q16236 605 aa25.76■■□□□ 1.71
SS18-209ENST00000578595 MSL1Q68DK7 614 aa25.76■■□□□ 1.71
SS18-209ENST00000578595 PLEKHF1Q96S99 279 aa25.76■■□□□ 1.71
SS18-209ENST00000578595 CEMIPQ8WUJ3 1361 aa25.76■■□□□ 1.71
SS18-209ENST00000578595 C4AP0C0L4 1744 aa25.75■■□□□ 1.71
SS18-209ENST00000578595 BTBD11A6QL63 1104 aa25.75■■□□□ 1.71
SS18-209ENST00000578595 SSFA2P28290 1259 aa25.75■■□□□ 1.71
SS18-209ENST00000578595 RTCBQ9Y3I0 505 aaKnown RBP25.75■■□□□ 1.71
SS18-209ENST00000578595 DNAJC10Q8IXB1 793 aa25.74■■□□□ 1.71
SS18-209ENST00000578595 KLHL34Q8N239 644 aa25.74■■□□□ 1.71
SS18-209ENST00000578595 COL24A1Q17RW2 1714 aa25.74■■□□□ 1.71
SS18-209ENST00000578595 CNTNAP4Q9C0A0 1308 aa25.73■■□□□ 1.71
SS18-209ENST00000578595 PTGER2P43116 358 aa25.73■■□□□ 1.71
SS18-209ENST00000578595 AMIGO3Q86WK7 504 aa25.73■■□□□ 1.71
SS18-209ENST00000578595 HTATSF1O43719 755 aaKnown RBP25.72■■□□□ 1.71
SS18-209ENST00000578595 CRKLP46109 303 aaKnown RBP25.72■■□□□ 1.71
SS18-209ENST00000578595 ZNF790Q6PG37 636 aa25.72■■□□□ 1.71
SS18-209ENST00000578595 ARXQ96QS3 562 aa25.7■■□□□ 1.7
SS18-209ENST00000578595 RIPK4P57078 832 aa25.69■■□□□ 1.7
SS18-209ENST00000578595 NEUROD2Q15784 382 aa25.69■■□□□ 1.7
SS18-209ENST00000578595 TRAPPC3LQ5T215 181 aa25.69■■□□□ 1.7
SS18-209ENST00000578595 RC3H1Q5TC82 1133 aaKnown RBP25.69■■□□□ 1.7
SS18-209ENST00000578595 ZNF496Q96IT1 587 aaPredicted RBP25.69■■□□□ 1.7
SS18-209ENST00000578595 ADAMTS8Q9UP79 889 aa25.69■■□□□ 1.7
SS18-209ENST00000578595 RRP7AQ9Y3A4 280 aaKnown RBP25.69■■□□□ 1.7
SS18-209ENST00000578595 KDM3BQ7LBC6 1761 aa25.69■■□□□ 1.7
SS18-209ENST00000578595 FMNL2Q96PY5 1086 aa25.68■■□□□ 1.7
SS18-209ENST00000578595 THUMPD2Q9BTF0 503 aaKnown RBP25.68■■□□□ 1.7
SS18-209ENST00000578595 RPS6KA4O75676 772 aa25.67■■□□□ 1.7
SS18-209ENST00000578595 RUNDC1Q96C34 613 aa25.67■■□□□ 1.7
SS18-209ENST00000578595 CCDC87Q9NVE4 849 aa25.67■■□□□ 1.7
SS18-209ENST00000578595 HEG1Q9ULI3 1381 aa25.67■■□□□ 1.7
SS18-209ENST00000578595 SGIP1Q9BQI5 828 aa25.66■■□□□ 1.7
SS18-209ENST00000578595 KCNQ3O43525 872 aa25.65■■□□□ 1.7
SS18-209ENST00000578595 RFC4P35249 363 aa25.65■■□□□ 1.7
SS18-209ENST00000578595 TMPOP42166 694 aaKnown RBP25.65■■□□□ 1.7
SS18-209ENST00000578595 LMOD3Q0VAK6 560 aa25.65■■□□□ 1.7
SS18-209ENST00000578595 TAF7Q15545 349 aaPredicted RBP25.65■■□□□ 1.7
SS18-209ENST00000578595 VSIG10Q8N0Z9 540 aa25.65■■□□□ 1.7
SS18-209ENST00000578595 ADRA2BP18089 450 aa25.64■■□□□ 1.7
SS18-209ENST00000578595 FHDC1Q9C0D6 1143 aaPredicted RBP25.64■■□□□ 1.7
SS18-209ENST00000578595 MRS2Q9HD23 443 aa25.64■■□□□ 1.7
SS18-209ENST00000578595 STARD3NLO95772 234 aa25.63■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms