RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CDAN1Q8IWY9 1227 aa8.53□□□□□ -1.04
VPS53-219ENST00000576019 NPHP4O75161 1426 aaPredicted RBP8.53□□□□□ -1.04
VPS53-219ENST00000576019 DIP2CQ9Y2E4 1556 aa8.52□□□□□ -1.04
VPS53-219ENST00000576019 DEPDC5O75140 1603 aa8.52□□□□□ -1.05
VPS53-219ENST00000576019 LRRC9Q6ZRR7 1453 aa8.51□□□□□ -1.05
VPS53-219ENST00000576019 IGF1RP08069 1367 aa8.51□□□□□ -1.05
VPS53-219ENST00000576019 IQGAP1P46940 1657 aa8.51□□□□□ -1.05
VPS53-219ENST00000576019 TRIM6-TRIM34B2RNG4 842 aa8.51□□□□□ -1.05
VPS53-219ENST00000576019 VAMP1P23763 118 aa8.51□□□□□ -1.05
VPS53-219ENST00000576019 NAALADL2Q58DX5 795 aa8.51□□□□□ -1.05
VPS53-219ENST00000576019 SPATA32Q96LK8 384 aa8.51□□□□□ -1.05
VPS53-219ENST00000576019 ZBBXA8MT70 800 aa8.5□□□□□ -1.05
VPS53-219ENST00000576019 PPP1R3GB7ZBB8 358 aa8.5□□□□□ -1.05
VPS53-219ENST00000576019 ABL1P00519 1130 aa8.5□□□□□ -1.05
VPS53-219ENST00000576019 BLMP54132 1417 aaPredicted RBP8.5□□□□□ -1.05
VPS53-219ENST00000576019 ZNF211Q13398 564 aaPredicted RBP8.5□□□□□ -1.05
VPS53-219ENST00000576019 NCOA4Q13772 614 aa8.5□□□□□ -1.05
VPS53-219ENST00000576019 VARS2Q5ST30 1063 aaKnown RBP8.5□□□□□ -1.05
VPS53-219ENST00000576019 PACS2Q86VP3 889 aa8.5□□□□□ -1.05
VPS53-219ENST00000576019 ANKMY2Q8IV38 441 aa8.5□□□□□ -1.05
VPS53-219ENST00000576019 SCAPERQ9BY12 1400 aa8.5□□□□□ -1.05
VPS53-219ENST00000576019 QTRT2Q9H974 415 aaKnown RBP8.5□□□□□ -1.05
VPS53-219ENST00000576019 KDM5DQ9BY66 1539 aa8.49□□□□□ -1.05
VPS53-219ENST00000576019 H3BRB1 525 aa8.49□□□□□ -1.05
VPS53-219ENST00000576019 TSNAXIP1Q2TAA8 658 aa8.49□□□□□ -1.05
VPS53-219ENST00000576019 FBXO33Q7Z6M2 555 aa8.49□□□□□ -1.05
VPS53-219ENST00000576019 UBXN4Q92575 508 aa8.49□□□□□ -1.05
VPS53-219ENST00000576019 NGLY1Q96IV0 654 aa8.49□□□□□ -1.05
VPS53-219ENST00000576019 CDCA7Q9BWT1 371 aaPredicted RBP8.49□□□□□ -1.05
VPS53-219ENST00000576019 TUT1Q9H6E5 874 aaKnown RBP8.49□□□□□ -1.05
VPS53-219ENST00000576019 ANO2Q9NQ90 1003 aa8.49□□□□□ -1.05
VPS53-219ENST00000576019 LHX6Q9UPM6 363 aa8.49□□□□□ -1.05
VPS53-219ENST00000576019 CANXP27824 592 aaKnown RBP8.48□□□□□ -1.05
VPS53-219ENST00000576019 FUT2Q10981 343 aa8.48□□□□□ -1.05
VPS53-219ENST00000576019 DPYDQ12882 1025 aa8.48□□□□□ -1.05
VPS53-219ENST00000576019 DEFB132Q7Z7B7 95 aa8.48□□□□□ -1.05
VPS53-219ENST00000576019 ZNF594Q96JF6 807 aaPredicted RBP8.48□□□□□ -1.05
VPS53-219ENST00000576019 SCAF11Q99590 1463 aaKnown RBP8.48□□□□□ -1.05
VPS53-219ENST00000576019 ATP5J2-PTCD1G3V325 749 aa8.47□□□□□ -1.05
VPS53-219ENST00000576019 GIGYF1O75420 1035 aaPredicted RBP8.47□□□□□ -1.05
VPS53-219ENST00000576019 MAPK1P28482 360 aa8.47□□□□□ -1.05
VPS53-219ENST00000576019 SWT1Q5T5J6 900 aaKnown RBP8.47□□□□□ -1.05
VPS53-219ENST00000576019 ANKLE2Q86XL3 938 aa8.47□□□□□ -1.05
VPS53-219ENST00000576019 ZNF687Q8N1G0 1237 aa8.47□□□□□ -1.05
VPS53-219ENST00000576019 KCNH2Q12809 1159 aa8.46□□□□□ -1.06
VPS53-219ENST00000576019 SF3A1Q15459 793 aaKnown RBP8.46□□□□□ -1.06
VPS53-219ENST00000576019 PROX2Q3B8N5 592 aa8.46□□□□□ -1.06
VPS53-219ENST00000576019 COL13A1Q5TAT6 717 aaPredicted RBP8.46□□□□□ -1.06
VPS53-219ENST00000576019 BCL2L12Q9HB09 334 aa8.46□□□□□ -1.06
VPS53-219ENST00000576019 ABCA6Q8N139 1617 aa8.46□□□□□ -1.06
VPS53-219ENST00000576019 CAMTA1Q9Y6Y1 1673 aa8.46□□□□□ -1.06
VPS53-219ENST00000576019 RTEL1-TNFRSF6BF6WH68 1400 aa8.46□□□□□ -1.06
VPS53-219ENST00000576019 PRMT3O60678 531 aa8.45□□□□□ -1.06
VPS53-219ENST00000576019 PTPREP23469 700 aa8.45□□□□□ -1.06
VPS53-219ENST00000576019 SWI5Q1ZZU3 235 aa8.45□□□□□ -1.06
VPS53-219ENST00000576019 GRIPAP1Q4V328 841 aa8.45□□□□□ -1.06
VPS53-219ENST00000576019 PPP4R3BQ5MIZ7 849 aa8.45□□□□□ -1.06
VPS53-219ENST00000576019 ABCC1P33527 1531 aa8.44□□□□□ -1.06
VPS53-219ENST00000576019 ERCC5P28715 1186 aaPredicted RBP8.44□□□□□ -1.06
VPS53-219ENST00000576019 MYT1Q01538 1121 aa8.44□□□□□ -1.06
VPS53-219ENST00000576019 SLFNL1Q499Z3 407 aa8.44□□□□□ -1.06
VPS53-219ENST00000576019 GLYCTKQ8IVS8 523 aa8.44□□□□□ -1.06
VPS53-219ENST00000576019 OGFOD1Q8N543 542 aa8.44□□□□□ -1.06
VPS53-219ENST00000576019 KRTAP3-3Q9BYR6 98 aa8.44□□□□□ -1.06
VPS53-219ENST00000576019 KRTAP3-2Q9BYR7 98 aa8.44□□□□□ -1.06
VPS53-219ENST00000576019 RNF135Q8IUD6 432 aa8.43□□□□□ -1.06
VPS53-219ENST00000576019 TNS4Q8IZW8 715 aa8.43□□□□□ -1.06
VPS53-219ENST00000576019 PLPP7Q8NBV4 271 aa8.43□□□□□ -1.06
VPS53-219ENST00000576019 C1orf216Q8TAB5 229 aa8.43□□□□□ -1.06
VPS53-219ENST00000576019 EGFL7Q9UHF1 273 aa8.43□□□□□ -1.06
VPS53-219ENST00000576019 FKBPLQ9UIM3 349 aa8.43□□□□□ -1.06
VPS53-219ENST00000576019 NINLQ9Y2I6 1382 aa8.43□□□□□ -1.06
VPS53-219ENST00000576019 ZNF518AQ6AHZ1 1483 aa8.43□□□□□ -1.06
VPS53-219ENST00000576019 KIF14Q15058 1648 aa8.43□□□□□ -1.06
VPS53-219ENST00000576019 ZC3H13Q5T200 1668 aaKnown RBP8.43□□□□□ -1.06
VPS53-219ENST00000576019 CLDN10P78369 228 aa8.42□□□□□ -1.06
VPS53-219ENST00000576019 RETREG3Q86VR2 466 aa8.42□□□□□ -1.06
VPS53-219ENST00000576019 PRIMPOLQ96LW4 560 aa8.42□□□□□ -1.06
VPS53-219ENST00000576019 MAP3K1Q13233 1512 aa8.42□□□□□ -1.06
VPS53-219ENST00000576019 CLTCQ00610 1675 aaKnown RBP8.42□□□□□ -1.06
VPS53-219ENST00000576019 CHD4Q14839 1912 aa8.41□□□□□ -1.06
VPS53-219ENST00000576019 ITSN2Q9NZM3 1697 aa8.41□□□□□ -1.06
VPS53-219ENST00000576019 ICMTO60725 284 aa8.41□□□□□ -1.06
VPS53-219ENST00000576019 CFHP08603 1231 aa8.41□□□□□ -1.06
VPS53-219ENST00000576019 PBX2P40425 430 aa8.41□□□□□ -1.06
VPS53-219ENST00000576019 ASB16Q96NS5 453 aa8.41□□□□□ -1.06
VPS53-219ENST00000576019 DIP2AQ14689 1571 aa8.4□□□□□ -1.06
VPS53-219ENST00000576019 PLCH2O75038 1416 aa8.4□□□□□ -1.06
VPS53-219ENST00000576019 CARMIL1Q5VZK9 1371 aa8.4□□□□□ -1.06
VPS53-219ENST00000576019 EML3Q32P44 896 aa8.4□□□□□ -1.06
VPS53-219ENST00000576019 C9orf131Q5VYM1 1079 aa8.4□□□□□ -1.06
VPS53-219ENST00000576019 LYPD8Q6UX82 237 aa8.4□□□□□ -1.06
VPS53-219ENST00000576019 DNAAF2Q9NVR5 837 aaKnown RBP8.4□□□□□ -1.06
VPS53-219ENST00000576019 CXXC1Q9P0U4 656 aaPredicted RBP8.4□□□□□ -1.06
VPS53-219ENST00000576019 CEP126Q9P2H0 1117 aa8.4□□□□□ -1.06
VPS53-219ENST00000576019 DCTN4Q9UJW0 460 aa8.4□□□□□ -1.06
VPS53-219ENST00000576019 AHDC1Q5TGY3 1603 aaPredicted RBP8.4□□□□□ -1.07
VPS53-219ENST00000576019 ATP6V1AP38606 617 aa8.39□□□□□ -1.07
VPS53-219ENST00000576019 BACH2Q9BYV9 841 aa8.39□□□□□ -1.07
VPS53-219ENST00000576019 BCL11AQ9H165 835 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms