RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 VIRMAQ69YN4 1812 aaKnown RBP12.61□□□□□ -0.39
CCDC40-214ENST00000575431 CCER2I3L3R5 266 aa12.61□□□□□ -0.39
CCDC40-214ENST00000575431 CCDC184Q52MB2 194 aa12.61□□□□□ -0.39
CCDC40-214ENST00000575431 IL17REQ8NFR9 667 aa12.61□□□□□ -0.39
CCDC40-214ENST00000575431 PROM2Q8N271 834 aa12.6□□□□□ -0.39
CCDC40-214ENST00000575431 ATG3Q9NT62 314 aa12.6□□□□□ -0.39
CCDC40-214ENST00000575431 DLG5Q8TDM6 1919 aa12.59□□□□□ -0.39
CCDC40-214ENST00000575431 TMPOP42166 694 aaKnown RBP12.59□□□□□ -0.39
CCDC40-214ENST00000575431 RIPK4P57078 832 aa12.59□□□□□ -0.39
CCDC40-214ENST00000575431 CCNL1Q9UK58 526 aaPredicted RBP12.59□□□□□ -0.39
CCDC40-214ENST00000575431 NUP188Q5SRE5 1749 aa12.59□□□□□ -0.39
CCDC40-214ENST00000575431 ZNF831Q5JPB2 1677 aa12.58□□□□□ -0.4
CCDC40-214ENST00000575431 NCBP3Q53F19 620 aaKnown RBP12.58□□□□□ -0.4
CCDC40-214ENST00000575431 CCDC146Q8IYE0 955 aa12.58□□□□□ -0.4
CCDC40-214ENST00000575431 ASAP1Q9ULH1 1129 aa12.58□□□□□ -0.4
CCDC40-214ENST00000575431 LOC102724428A0A0B4J2F2 783 aa12.57□□□□□ -0.4
CCDC40-214ENST00000575431 SIK1P57059 783 aa12.57□□□□□ -0.4
CCDC40-214ENST00000575431 TTC5Q8N0Z6 440 aa12.57□□□□□ -0.4
CCDC40-214ENST00000575431 SIPA1L3O60292 1781 aaPredicted RBP12.56□□□□□ -0.4
CCDC40-214ENST00000575431 EP400Q96L91 3159 aa12.56□□□□□ -0.4
CCDC40-214ENST00000575431 TAF7Q15545 349 aaPredicted RBP12.56□□□□□ -0.4
CCDC40-214ENST00000575431 MCM10Q7L590 875 aa12.56□□□□□ -0.4
CCDC40-214ENST00000575431 STK32BQ9NY57 414 aa12.56□□□□□ -0.4
CCDC40-214ENST00000575431 BTBD11A6QL63 1104 aa12.55□□□□□ -0.4
CCDC40-214ENST00000575431 APAF1O14727 1248 aa12.55□□□□□ -0.4
CCDC40-214ENST00000575431 ATP6V1AP38606 617 aa12.55□□□□□ -0.4
CCDC40-214ENST00000575431 NEUROD2Q15784 382 aa12.55□□□□□ -0.4
CCDC40-214ENST00000575431 VSIG10Q8N0Z9 540 aa12.55□□□□□ -0.4
CCDC40-214ENST00000575431 NGEFQ8N5V2 710 aa12.55□□□□□ -0.4
CCDC40-214ENST00000575431 RBM42Q9BTD8 480 aaKnown RBP12.55□□□□□ -0.4
CCDC40-214ENST00000575431 LRRC4BQ9NT99 713 aa12.55□□□□□ -0.4
CCDC40-214ENST00000575431 BABAM1Q9NWV8 329 aa12.55□□□□□ -0.4
CCDC40-214ENST00000575431 PAPPAQ13219 1627 aa12.55□□□□□ -0.4
CCDC40-214ENST00000575431 CALD1Q05682 793 aaKnown RBP12.54□□□□□ -0.4
CCDC40-214ENST00000575431 DCTN1Q14203 1278 aa12.54□□□□□ -0.4
CCDC40-214ENST00000575431 SLC15A2Q16348 729 aa12.54□□□□□ -0.4
CCDC40-214ENST00000575431 ZNF790Q6PG37 636 aa12.54□□□□□ -0.4
CCDC40-214ENST00000575431 FAM9BQ8IZU0 186 aa12.54□□□□□ -0.4
CCDC40-214ENST00000575431 CICQ96RK0 1608 aaPredicted RBP12.53□□□□□ -0.4
CCDC40-214ENST00000575431 PTCD1O75127 700 aaKnown RBP12.53□□□□□ -0.4
CCDC40-214ENST00000575431 CCDC27Q2M243 656 aa12.53□□□□□ -0.4
CCDC40-214ENST00000575431 TEX13AQ9BXU3 409 aaPredicted RBP12.53□□□□□ -0.4
CCDC40-214ENST00000575431 RRP7AQ9Y3A4 280 aaKnown RBP12.53□□□□□ -0.4
CCDC40-214ENST00000575431 C5P01031 1676 aa12.53□□□□□ -0.4
CCDC40-214ENST00000575431 TAF1LQ8IZX4 1826 aa12.53□□□□□ -0.4
CCDC40-214ENST00000575431 UBR2Q8IWV8 1755 aa12.52□□□□□ -0.41
CCDC40-214ENST00000575431 SLC39A6Q13433 755 aa12.52□□□□□ -0.41
CCDC40-214ENST00000575431 FLAD1Q8NFF5 587 aa12.52□□□□□ -0.41
CCDC40-214ENST00000575431 AKT1S1Q96B36 256 aa12.52□□□□□ -0.41
CCDC40-214ENST00000575431 FMNL2Q96PY5 1086 aa12.52□□□□□ -0.41
CCDC40-214ENST00000575431 TRIM35Q9UPQ4 493 aa12.52□□□□□ -0.41
CCDC40-214ENST00000575431 R3HDM1Q15032 1099 aaKnown RBP12.51□□□□□ -0.41
CCDC40-214ENST00000575431 RC3H1Q5TC82 1133 aaKnown RBP12.51□□□□□ -0.41
CCDC40-214ENST00000575431 MIER1Q8N108 512 aa12.51□□□□□ -0.41
CCDC40-214ENST00000575431 KCPQ6ZWJ8 1503 aa12.51□□□□□ -0.41
CCDC40-214ENST00000575431 QSER1Q2KHR3 1735 aa12.51□□□□□ -0.41
CCDC40-214ENST00000575431 KCNQ4P56696 695 aa12.5□□□□□ -0.41
CCDC40-214ENST00000575431 ITPK1Q13572 414 aa12.5□□□□□ -0.41
CCDC40-214ENST00000575431 ZNF496Q96IT1 587 aaPredicted RBP12.5□□□□□ -0.41
CCDC40-214ENST00000575431 AK7Q96M32 723 aa12.5□□□□□ -0.41
CCDC40-214ENST00000575431 SLC4A9Q96Q91 983 aa12.5□□□□□ -0.41
CCDC40-214ENST00000575431 THUMPD2Q9BTF0 503 aaKnown RBP12.5□□□□□ -0.41
CCDC40-214ENST00000575431 ANO8Q9HCE9 1232 aaPredicted RBP12.5□□□□□ -0.41
CCDC40-214ENST00000575431 TFCP2L1Q9NZI6 479 aa12.5□□□□□ -0.41
CCDC40-214ENST00000575431 CNTNAP4Q9C0A0 1308 aa12.5□□□□□ -0.41
CCDC40-214ENST00000575431 HEG1Q9ULI3 1381 aa12.5□□□□□ -0.41
CCDC40-214ENST00000575431 C4BP0C0L5 1744 aa12.5□□□□□ -0.41
CCDC40-214ENST00000575431 STARD3NLO95772 234 aa12.49□□□□□ -0.41
CCDC40-214ENST00000575431 SLC16A10Q8TF71 515 aa12.49□□□□□ -0.41
CCDC40-214ENST00000575431 KDM3BQ7LBC6 1761 aa12.48□□□□□ -0.41
CCDC40-214ENST00000575431 COL5A3P25940 1745 aaPredicted RBP12.48□□□□□ -0.41
CCDC40-214ENST00000575431 PSDA5PKW4 1024 aaPredicted RBP12.48□□□□□ -0.41
CCDC40-214ENST00000575431 SNRPA1P09661 255 aaKnown RBP12.48□□□□□ -0.41
CCDC40-214ENST00000575431 SSFA2P28290 1259 aa12.48□□□□□ -0.41
CCDC40-214ENST00000575431 GNAI1P63096 354 aa12.48□□□□□ -0.41
CCDC40-214ENST00000575431 ZNF827Q17R98 1081 aa12.48□□□□□ -0.41
CCDC40-214ENST00000575431 LINC00116Q8NCU8 138 aa12.48□□□□□ -0.41
CCDC40-214ENST00000575431 CFAP44Q96MT7 982 aa12.48□□□□□ -0.41
CCDC40-214ENST00000575431 TSPYL4Q9UJ04 414 aa12.48□□□□□ -0.41
CCDC40-214ENST00000575431 TJP1Q07157 1748 aa12.48□□□□□ -0.41
CCDC40-214ENST00000575431 CHL1O00533 1208 aa12.47□□□□□ -0.41
CCDC40-214ENST00000575431 ADRA2BP18089 450 aa12.47□□□□□ -0.41
CCDC40-214ENST00000575431 WWC1Q8IX03 1113 aa12.47□□□□□ -0.41
CCDC40-214ENST00000575431 DNAJC10Q8IXB1 793 aa12.47□□□□□ -0.41
CCDC40-214ENST00000575431 IFT57Q9NWB7 429 aa12.47□□□□□ -0.41
CCDC40-214ENST00000575431 RTCBQ9Y3I0 505 aaKnown RBP12.47□□□□□ -0.41
CCDC40-214ENST00000575431 IL16Q14005 1332 aa12.46□□□□□ -0.41
CCDC40-214ENST00000575431 GNPATO15228 680 aa12.46□□□□□ -0.41
CCDC40-214ENST00000575431 KCNQ3O43525 872 aa12.46□□□□□ -0.41
CCDC40-214ENST00000575431 RPS6KA4O75676 772 aa12.46□□□□□ -0.41
CCDC40-214ENST00000575431 CYP19A1P11511 503 aaPredicted RBP12.46□□□□□ -0.41
CCDC40-214ENST00000575431 CRKLP46109 303 aaKnown RBP12.46□□□□□ -0.41
CCDC40-214ENST00000575431 EIF4A1P60842 406 aaKnown RBP12.46□□□□□ -0.41
CCDC40-214ENST00000575431 WDR63Q8IWG1 891 aa12.46□□□□□ -0.41
CCDC40-214ENST00000575431 CCDC87Q9NVE4 849 aa12.46□□□□□ -0.41
CCDC40-214ENST00000575431 MIS18AQ9NYP9 233 aa12.46□□□□□ -0.41
CCDC40-214ENST00000575431 PNPLA7Q6ZV29 1317 aa12.45□□□□□ -0.42
CCDC40-214ENST00000575431 LAS1LQ9Y4W2 734 aaKnown RBP12.45□□□□□ -0.42
CCDC40-214ENST00000575431 UBR3Q6ZT12 1888 aa12.44□□□□□ -0.42
CCDC40-214ENST00000575431 CASZ1Q86V15 1759 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms