RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 KIF3AQ9Y496 699 aa11.69□□□□□ -0.54
CCDC40-212ENST00000574799 ALS2Q96Q42 1657 aa11.69□□□□□ -0.54
CCDC40-212ENST00000574799 FAM208AQ9UK61 1670 aaKnown RBP11.69□□□□□ -0.54
CCDC40-212ENST00000574799 FAM83GA6ND36 823 aa11.69□□□□□ -0.54
CCDC40-212ENST00000574799 TRHP20396 242 aaPredicted RBP11.69□□□□□ -0.54
CCDC40-212ENST00000574799 CASC1Q6TDU7 716 aa11.69□□□□□ -0.54
CCDC40-212ENST00000574799 THEMISQ8N1K5 641 aaPredicted RBP11.69□□□□□ -0.54
CCDC40-212ENST00000574799 RGS12O14924 1447 aa11.68□□□□□ -0.54
CCDC40-212ENST00000574799 ST18O60284 1047 aa11.68□□□□□ -0.54
CCDC40-212ENST00000574799 ZNF500O60304 480 aaPredicted RBP11.68□□□□□ -0.54
CCDC40-212ENST00000574799 HSP90AB2PQ58FF8 381 aa11.68□□□□□ -0.54
CCDC40-212ENST00000574799 TSPYL6Q8N831 410 aa11.68□□□□□ -0.54
CCDC40-212ENST00000574799 BCL11BQ9C0K0 894 aaPredicted RBP11.68□□□□□ -0.54
CCDC40-212ENST00000574799 KDRP35968 1356 aa11.68□□□□□ -0.54
CCDC40-212ENST00000574799 CRB1P82279 1406 aa11.68□□□□□ -0.54
CCDC40-212ENST00000574799 MCM5P33992 734 aa11.68□□□□□ -0.54
CCDC40-212ENST00000574799 DMTNQ08495 405 aa11.68□□□□□ -0.54
CCDC40-212ENST00000574799 PDCL2Q8N4E4 241 aa11.68□□□□□ -0.54
CCDC40-212ENST00000574799 ZNF830Q96NB3 372 aaPredicted RBP11.68□□□□□ -0.54
CCDC40-212ENST00000574799 TRIM27P14373 513 aa11.67□□□□□ -0.54
CCDC40-212ENST00000574799 NFE2L2Q16236 605 aa11.67□□□□□ -0.54
CCDC40-212ENST00000574799 RBM33Q96EV2 1170 aaKnown RBP11.67□□□□□ -0.54
CCDC40-212ENST00000574799 MAP3K19Q56UN5 1328 aa11.67□□□□□ -0.54
CCDC40-212ENST00000574799 CHD1LQ86WJ1 897 aa11.67□□□□□ -0.54
CCDC40-212ENST00000574799 COG3Q96JB2 828 aa11.67□□□□□ -0.54
CCDC40-212ENST00000574799 EID1Q9Y6B2 187 aa11.66□□□□□ -0.54
CCDC40-212ENST00000574799 LMO7Q8WWI1 1683 aa11.66□□□□□ -0.54
CCDC40-212ENST00000574799 MED1Q15648 1581 aaPredicted RBP11.66□□□□□ -0.54
CCDC40-212ENST00000574799 SIPA1L3O60292 1781 aaPredicted RBP11.66□□□□□ -0.54
CCDC40-212ENST00000574799 TSPY26PQ9H489 355 aa11.66□□□□□ -0.54
CCDC40-212ENST00000574799 C1orf115Q9H7X2 142 aa11.66□□□□□ -0.54
CCDC40-212ENST00000574799 CD2BP2O95400 341 aaKnown RBP11.65□□□□□ -0.54
CCDC40-212ENST00000574799 RBM25P49756 843 aaKnown RBP11.65□□□□□ -0.54
CCDC40-212ENST00000574799 BRPF1P55201 1214 aaPredicted RBP11.65□□□□□ -0.54
CCDC40-212ENST00000574799 ZNF445P59923 1031 aa11.65□□□□□ -0.54
CCDC40-212ENST00000574799 JARID2Q92833 1246 aaPredicted RBP11.65□□□□□ -0.54
CCDC40-212ENST00000574799 GTPBP4Q9BZE4 634 aaKnown RBP11.65□□□□□ -0.54
CCDC40-212ENST00000574799 CHMP4BQ9H444 224 aaKnown RBP11.65□□□□□ -0.54
CCDC40-212ENST00000574799 NOB1Q9ULX3 412 aaKnown RBP11.65□□□□□ -0.54
CCDC40-212ENST00000574799 VGLL3A8MV65 326 aa11.65□□□□□ -0.55
CCDC40-212ENST00000574799 VAMP4O75379 141 aa11.65□□□□□ -0.55
CCDC40-212ENST00000574799 DCTN1Q14203 1278 aa11.65□□□□□ -0.55
CCDC40-212ENST00000574799 TMEM57Q8N5G2 664 aa11.65□□□□□ -0.55
CCDC40-212ENST00000574799 MBIPQ9NS73 344 aa11.65□□□□□ -0.55
CCDC40-212ENST00000574799 KDM3BQ7LBC6 1761 aa11.65□□□□□ -0.55
CCDC40-212ENST00000574799 ADGRL3Q9HAR2 1447 aa11.64□□□□□ -0.55
CCDC40-212ENST00000574799 SLIT3O75094 1523 aa11.64□□□□□ -0.55
CCDC40-212ENST00000574799 RABEP1Q15276 862 aa11.64□□□□□ -0.55
CCDC40-212ENST00000574799 ATF7IPQ6VMQ6 1270 aa11.64□□□□□ -0.55
CCDC40-212ENST00000574799 CDC45O75419 566 aa11.64□□□□□ -0.55
CCDC40-212ENST00000574799 PHF14O94880 888 aa11.64□□□□□ -0.55
CCDC40-212ENST00000574799 LETM1O95202 739 aaPredicted RBP11.64□□□□□ -0.55
CCDC40-212ENST00000574799 STRCQ7RTU9 1775 aa11.64□□□□□ -0.55
CCDC40-212ENST00000574799 TUBGCP6Q96RT7 1819 aa11.64□□□□□ -0.55
CCDC40-212ENST00000574799 TBC1D9Q6ZT07 1266 aa11.64□□□□□ -0.55
CCDC40-212ENST00000574799 MBD3O95983 291 aa11.63□□□□□ -0.55
CCDC40-212ENST00000574799 DIAPH3Q9NSV4 1193 aa11.63□□□□□ -0.55
CCDC40-212ENST00000574799 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.63□□□□□ -0.55
CCDC40-212ENST00000574799 ADAMTS7Q9UKP4 1686 aa11.63□□□□□ -0.55
CCDC40-212ENST00000574799 COL18A1P39060 1754 aa11.63□□□□□ -0.55
CCDC40-212ENST00000574799 KIF20AO95235 890 aa11.63□□□□□ -0.55
CCDC40-212ENST00000574799 CT47B1P0C2W7 299 aaPredicted RBP11.63□□□□□ -0.55
CCDC40-212ENST00000574799 LRSAM1Q6UWE0 723 aa11.63□□□□□ -0.55
CCDC40-212ENST00000574799 TTC21AQ8NDW8 1320 aa11.63□□□□□ -0.55
CCDC40-212ENST00000574799 SBNO1A3KN83 1393 aa11.63□□□□□ -0.55
CCDC40-212ENST00000574799 UTP14CQ5TAP6 766 aaKnown RBP11.63□□□□□ -0.55
CCDC40-212ENST00000574799 DRC7Q8IY82 874 aa11.63□□□□□ -0.55
CCDC40-212ENST00000574799 C8orf58Q8NAV2 365 aa11.63□□□□□ -0.55
CCDC40-212ENST00000574799 NAP1L2Q9ULW6 460 aaPredicted RBP11.63□□□□□ -0.55
CCDC40-212ENST00000574799 ARHGEF10O15013 1369 aa11.62□□□□□ -0.55
CCDC40-212ENST00000574799 PLCD3Q8N3E9 789 aa11.62□□□□□ -0.55
CCDC40-212ENST00000574799 C17orf53Q8N3J3 647 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-212ENST00000574799 MYRIPQ8NFW9 859 aa11.62□□□□□ -0.55
CCDC40-212ENST00000574799 TTC12Q9H892 705 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-212ENST00000574799 NPHP4O75161 1426 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-212ENST00000574799 PRIMPOLQ96LW4 560 aa11.62□□□□□ -0.55
CCDC40-212ENST00000574799 USP25Q9UHP3 1055 aa11.62□□□□□ -0.55
CCDC40-212ENST00000574799 IGSF1Q8N6C5 1336 aa11.62□□□□□ -0.55
CCDC40-212ENST00000574799 HDAC1Q13547 482 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-212ENST00000574799 ELL2O00472 640 aaPredicted RBP11.61□□□□□ -0.55
CCDC40-212ENST00000574799 FOXO3O43524 673 aa11.61□□□□□ -0.55
CCDC40-212ENST00000574799 NOLC1Q14978 699 aaKnown RBP eCLIP11.61□□□□□ -0.55
CCDC40-212ENST00000574799 NCAPD2Q15021 1401 aa11.61□□□□□ -0.55
CCDC40-212ENST00000574799 KRT24Q2M2I5 525 aa11.61□□□□□ -0.55
CCDC40-212ENST00000574799 BMP2KLQ5H9B9 411 aa11.61□□□□□ -0.55
CCDC40-212ENST00000574799 MRPL50Q8N5N7 158 aaKnown RBP11.61□□□□□ -0.55
CCDC40-212ENST00000574799 CHAMP1Q96JM3 812 aa11.61□□□□□ -0.55
CCDC40-212ENST00000574799 LMBRD1Q9NUN5 540 aa11.61□□□□□ -0.55
CCDC40-212ENST00000574799 IFT57Q9NWB7 429 aa11.6□□□□□ -0.55
CCDC40-212ENST00000574799 MSH6P52701 1360 aa11.6□□□□□ -0.55
CCDC40-212ENST00000574799 ZSCAN20P17040 1043 aaPredicted RBP11.6□□□□□ -0.55
CCDC40-212ENST00000574799 PKP1Q13835 747 aa11.6□□□□□ -0.55
CCDC40-212ENST00000574799 SULT6B1Q6IMI4 303 aa11.6□□□□□ -0.55
CCDC40-212ENST00000574799 CWC22Q9HCG8 908 aaKnown RBP11.6□□□□□ -0.55
CCDC40-212ENST00000574799 MST1RQ04912 1400 aa11.6□□□□□ -0.55
CCDC40-212ENST00000574799 SPC24Q8NBT2 197 aa11.59□□□□□ -0.55
CCDC40-212ENST00000574799 CFAP44Q96MT7 982 aa11.59□□□□□ -0.55
CCDC40-212ENST00000574799 ZBTB40Q9NUA8 1239 aa11.59□□□□□ -0.55
CCDC40-212ENST00000574799 FLT4P35916 1363 aa11.59□□□□□ -0.55
CCDC40-212ENST00000574799 ZGPATQ8N5A5 531 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms