RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 MCCP23508 829 aa19.08■□□□□ 0.64
NUP88-207ENST00000573584 SALL3Q9BXA9 1300 aa19.08■□□□□ 0.64
NUP88-207ENST00000573584 GNAI3P08754 354 aa19.07■□□□□ 0.64
NUP88-207ENST00000573584 FKBP5Q13451 457 aaPredicted RBP19.07■□□□□ 0.64
NUP88-207ENST00000573584 RILPL2Q969X0 211 aa19.07■□□□□ 0.64
NUP88-207ENST00000573584 PNMA6EA0A0J9YXQ4 647 aa19.07■□□□□ 0.64
NUP88-207ENST00000573584 TRIM6-TRIM34B2RNG4 842 aa19.07■□□□□ 0.64
NUP88-207ENST00000573584 FLIIQ13045 1269 aa19.07■□□□□ 0.64
NUP88-207ENST00000573584 TMEM2Q9UHN6 1383 aa19.06■□□□□ 0.64
NUP88-207ENST00000573584 RRP9O43818 475 aaKnown RBP19.06■□□□□ 0.64
NUP88-207ENST00000573584 ANO2Q9NQ90 1003 aa19.06■□□□□ 0.64
NUP88-207ENST00000573584 TMEM63CQ9P1W3 806 aa19.06■□□□□ 0.64
NUP88-207ENST00000573584 RGPD1P0DJD0 1748 aa19.06■□□□□ 0.64
NUP88-207ENST00000573584 PALD1Q9ULE6 856 aa19.06■□□□□ 0.64
NUP88-207ENST00000573584 TSPOAP1O95153 1857 aa19.06■□□□□ 0.64
NUP88-207ENST00000573584 ATP8B2P98198 1209 aa19.05■□□□□ 0.64
NUP88-207ENST00000573584 HS1BP3Q53T59 392 aa19.05■□□□□ 0.64
NUP88-207ENST00000573584 CHMLP26374 656 aa19.05■□□□□ 0.64
NUP88-207ENST00000573584 CCDC30Q5VVM6 783 aa19.05■□□□□ 0.64
NUP88-207ENST00000573584 NECTIN2Q92692 538 aa19.05■□□□□ 0.64
NUP88-207ENST00000573584 EYA1Q99502 592 aa19.05■□□□□ 0.64
NUP88-207ENST00000573584 NSFL1CQ9UNZ2 370 aaKnown RBP19.05■□□□□ 0.64
NUP88-207ENST00000573584 SYCE3A1L190 88 aa19.04■□□□□ 0.64
NUP88-207ENST00000573584 TPM2P07951 284 aa19.04■□□□□ 0.64
NUP88-207ENST00000573584 LRSAM1Q6UWE0 723 aa19.04■□□□□ 0.64
NUP88-207ENST00000573584 PDLIM2Q96JY6 352 aa19.04■□□□□ 0.64
NUP88-207ENST00000573584 AMPHP49418 695 aa19.04■□□□□ 0.64
NUP88-207ENST00000573584 ANAPC15P60006 121 aa19.04■□□□□ 0.64
NUP88-207ENST00000573584 CUL4AQ13619 759 aa19.04■□□□□ 0.64
NUP88-207ENST00000573584 KIAA1211Q6ZU35 1233 aa19.04■□□□□ 0.64
NUP88-207ENST00000573584 FLT4P35916 1363 aa19.04■□□□□ 0.64
NUP88-207ENST00000573584 TNRQ92752 1358 aa19.04■□□□□ 0.64
NUP88-207ENST00000573584 BRD1O95696 1058 aa19.04■□□□□ 0.64
NUP88-207ENST00000573584 NOL8Q76FK4 1167 aaKnown RBP19.04■□□□□ 0.64
NUP88-207ENST00000573584 OFD1O75665 1012 aa19.03■□□□□ 0.64
NUP88-207ENST00000573584 MBD3O95983 291 aa19.03■□□□□ 0.64
NUP88-207ENST00000573584 KDRP35968 1356 aa19.03■□□□□ 0.64
NUP88-207ENST00000573584 ADAMTS13Q76LX8 1427 aa19.03■□□□□ 0.64
NUP88-207ENST00000573584 DIP2BQ9P265 1576 aa19.03■□□□□ 0.64
NUP88-207ENST00000573584 SBNO1A3KN83 1393 aa19.03■□□□□ 0.64
NUP88-207ENST00000573584 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.02■□□□□ 0.64
NUP88-207ENST00000573584 INTS4Q96HW7 963 aaKnown RBP19.02■□□□□ 0.64
NUP88-207ENST00000573584 SRCIN1Q9C0H9 1055 aa19.02■□□□□ 0.64
NUP88-207ENST00000573584 STAP2Q9UGK3 403 aa19.02■□□□□ 0.64
NUP88-207ENST00000573584 LRRFIP2Q9Y608 721 aaKnown RBP19.02■□□□□ 0.64
NUP88-207ENST00000573584 TTC21AQ8NDW8 1320 aa19.02■□□□□ 0.63
NUP88-207ENST00000573584 NOL7Q9UMY1 257 aaKnown RBP19.01■□□□□ 0.63
NUP88-207ENST00000573584 IGSF1Q8N6C5 1336 aa19.01■□□□□ 0.63
NUP88-207ENST00000573584 SSH2Q76I76 1423 aa19.01■□□□□ 0.63
NUP88-207ENST00000573584 NALCNQ8IZF0 1738 aa19.01■□□□□ 0.63
NUP88-207ENST00000573584 HTATSF1O43719 755 aaKnown RBP19.01■□□□□ 0.63
NUP88-207ENST00000573584 GLIPR1L2Q4G1C9 344 aa19■□□□□ 0.63
NUP88-207ENST00000573584 PDZRN4Q6ZMN7 1036 aaPredicted RBP19■□□□□ 0.63
NUP88-207ENST00000573584 UNC5CLQ8IV45 518 aa19■□□□□ 0.63
NUP88-207ENST00000573584 GNAT3A8MTJ3 354 aa19■□□□□ 0.63
NUP88-207ENST00000573584 UPF3BQ9BZI7 483 aaKnown RBP19■□□□□ 0.63
NUP88-207ENST00000573584 RIMS1Q86UR5 1692 aaKnown RBP18.99■□□□□ 0.63
NUP88-207ENST00000573584 LTKP29376 864 aa18.99■□□□□ 0.63
NUP88-207ENST00000573584 NGDNQ8NEJ9 315 aaKnown RBP18.99■□□□□ 0.63
NUP88-207ENST00000573584 SLC26A8Q96RN1 970 aa18.99■□□□□ 0.63
NUP88-207ENST00000573584 TOPAZ1Q8N9V7 1692 aa18.99■□□□□ 0.63
NUP88-207ENST00000573584 USP44Q9H0E7 712 aa18.98■□□□□ 0.63
NUP88-207ENST00000573584 IL1RAPL2Q9NP60 686 aa18.98■□□□□ 0.63
NUP88-207ENST00000573584 CEP170BQ9Y4F5 1589 aaPredicted RBP18.98■□□□□ 0.63
NUP88-207ENST00000573584 UBTFL1P0CB47 393 aaPredicted RBP18.97■□□□□ 0.63
NUP88-207ENST00000573584 RNF214Q8ND24 703 aa18.97■□□□□ 0.63
NUP88-207ENST00000573584 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.97■□□□□ 0.63
NUP88-207ENST00000573584 FOXD4L6Q3SYB3 417 aaPredicted RBP18.96■□□□□ 0.63
NUP88-207ENST00000573584 FOXD4L3Q6VB84 417 aaPredicted RBP18.96■□□□□ 0.63
NUP88-207ENST00000573584 IL17RAQ96F46 866 aa18.96■□□□□ 0.63
NUP88-207ENST00000573584 ZNF500O60304 480 aaPredicted RBP18.96■□□□□ 0.63
NUP88-207ENST00000573584 NUTM1Q86Y26 1132 aa18.95■□□□□ 0.62
NUP88-207ENST00000573584 IL17REQ8NFR9 667 aa18.95■□□□□ 0.62
NUP88-207ENST00000573584 AOX1Q06278 1338 aa18.95■□□□□ 0.62
NUP88-207ENST00000573584 PLEKHG1Q9ULL1 1385 aa18.95■□□□□ 0.62
NUP88-207ENST00000573584 TAF7Q15545 349 aaPredicted RBP18.95■□□□□ 0.62
NUP88-207ENST00000573584 IL25Q9H293 177 aa18.95■□□□□ 0.62
NUP88-207ENST00000573584 SOS1Q07889 1333 aaPredicted RBP18.95■□□□□ 0.62
NUP88-207ENST00000573584 SYAP1Q96A49 352 aaPredicted RBP18.94■□□□□ 0.62
NUP88-207ENST00000573584 ZKSCAN5Q9Y2L8 839 aa18.94■□□□□ 0.62
NUP88-207ENST00000573584 HSPA4P34932 840 aa18.94■□□□□ 0.62
NUP88-207ENST00000573584 NLRP6P59044 892 aa18.94■□□□□ 0.62
NUP88-207ENST00000573584 SSH3Q8TE77 659 aa18.94■□□□□ 0.62
NUP88-207ENST00000573584 AMOTL2Q9Y2J4 779 aa18.94■□□□□ 0.62
NUP88-207ENST00000573584 SURF6O75683 361 aaKnown RBP18.94■□□□□ 0.62
NUP88-207ENST00000573584 XPCQ01831 940 aaPredicted RBP18.94■□□□□ 0.62
NUP88-207ENST00000573584 PTPRUQ92729 1446 aa18.93■□□□□ 0.62
NUP88-207ENST00000573584 EPB41L2O43491 1005 aaKnown RBP18.93■□□□□ 0.62
NUP88-207ENST00000573584 TSPY26PQ9H489 355 aa18.93■□□□□ 0.62
NUP88-207ENST00000573584 GDPD2Q9HCC8 539 aa18.93■□□□□ 0.62
NUP88-207ENST00000573584 MAP4K4O95819 1239 aaPredicted RBP18.93■□□□□ 0.62
NUP88-207ENST00000573584 PPP1R42Q7Z4L9 355 aa18.93■□□□□ 0.62
NUP88-207ENST00000573584 CCDC39Q9UFE4 941 aa18.93■□□□□ 0.62
NUP88-207ENST00000573584 WDR33Q9C0J8 1336 aaKnown RBP18.93■□□□□ 0.62
NUP88-207ENST00000573584 UBR1Q8IWV7 1749 aa18.93■□□□□ 0.62
NUP88-207ENST00000573584 TERF1P54274 439 aa18.92■□□□□ 0.62
NUP88-207ENST00000573584 HDGFL1Q5TGJ6 251 aa18.92■□□□□ 0.62
NUP88-207ENST00000573584 PHAXQ9H814 394 aaKnown RBP18.92■□□□□ 0.62
NUP88-207ENST00000573584 R3HCC1Q9Y3T6 440 aaKnown RBP18.92■□□□□ 0.62
NUP88-207ENST00000573584 FMN2Q9NZ56 1722 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms