RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	ZRANB1	Q9UGI0	708 aa		13.59	□□□□□ -0.23
CLN3-238	ENST00000569430	LRRFIP2	Q9Y608	721 aa	Known RBP	13.59	□□□□□ -0.23
CLN3-238	ENST00000569430	HDGF	P51858	240 aa	Known RBP	13.58	□□□□□ -0.24
CLN3-238	ENST00000569430	TEF	Q10587	303 aa		13.58	□□□□□ -0.24
CLN3-238	ENST00000569430	CEP85	Q6P2H3	762 aa		13.58	□□□□□ -0.24
CLN3-238	ENST00000569430	ABCC1	P33527	1531 aa		13.58	□□□□□ -0.24
CLN3-238	ENST00000569430	ANKRD36B	Q8N2N9	1353 aa		13.58	□□□□□ -0.24
CLN3-238	ENST00000569430	ZNF500	O60304	480 aa	Predicted RBP	13.58	□□□□□ -0.24
CLN3-238	ENST00000569430	TRMT1	Q9NXH9	659 aa	Known RBP	13.58	□□□□□ -0.24
CLN3-238	ENST00000569430	PDC	P20941	246 aa		13.58	□□□□□ -0.24
CLN3-238	ENST00000569430	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
CLN3-238	ENST00000569430	HDGFL1	Q5TGJ6	251 aa		13.58	□□□□□ -0.24
CLN3-238	ENST00000569430	FSD1	Q9BTV5	496 aa		13.58	□□□□□ -0.24
CLN3-238	ENST00000569430	POLK	Q9UBT6	870 aa		13.58	□□□□□ -0.24
CLN3-238	ENST00000569430	ZNF692	Q9BU19	519 aa	Predicted RBP	13.57	□□□□□ -0.24
CLN3-238	ENST00000569430	LIMCH1	Q9UPQ0	1083 aa		13.57	□□□□□ -0.24
CLN3-238	ENST00000569430	NCKAP5L	Q9HCH0	1330 aa		13.57	□□□□□ -0.24
CLN3-238	ENST00000569430	TRH	P20396	242 aa	Predicted RBP	13.57	□□□□□ -0.24
CLN3-238	ENST00000569430	UBE2H	P62256	183 aa		13.57	□□□□□ -0.24
CLN3-238	ENST00000569430	AIMP1	Q12904	312 aa	Known RBP	13.57	□□□□□ -0.24
CLN3-238	ENST00000569430	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.57	□□□□□ -0.24
CLN3-238	ENST00000569430	CLTCL1	P53675	1640 aa		13.57	□□□□□ -0.24
CLN3-238	ENST00000569430	CCDC186	Q7Z3E2	898 aa		13.57	□□□□□ -0.24
CLN3-238	ENST00000569430	SRCIN1	Q9C0H9	1055 aa		13.57	□□□□□ -0.24
CLN3-238	ENST00000569430	RPGRIP1L	Q68CZ1	1315 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	DNM1	Q05193	864 aa	Known RBP	13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	CREBRF	Q8IUR6	639 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	AEBP1	Q8IUX7	1158 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	NECAB1	Q8N987	351 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	MNS1	Q8NEH6	495 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	DDX11	Q96FC9	970 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
CLN3-238	ENST00000569430		V9GYY5	206 aa	Predicted RBP	13.56	□□□□□ -0.24
CLN3-238	ENST00000569430		E9PCH4	1651 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	CPA1	P15085	419 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	TERF1	P54274	439 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	SMAP1	Q8IYB5	467 aa	Predicted RBP	13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	CD109	Q6YHK3	1445 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	IQGAP3	Q86VI3	1631 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	SMC2	O95347	1197 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	ZSCAN22	P10073	491 aa	Predicted RBP	13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	GJB2	P29033	226 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	UVSSA	Q2YD98	709 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	TCEANC2	Q96MN5	208 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	NSD2	O96028	1365 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	UNC13B	O14795	1591 aa		13.56	□□□□□ -0.24
CLN3-238	ENST00000569430	PTPRT	O14522	1441 aa		13.55	□□□□□ -0.24
CLN3-238	ENST00000569430	HSP90AB4P	Q58FF6	505 aa		13.55	□□□□□ -0.24
CLN3-238	ENST00000569430	ATP7A	Q04656	1500 aa		13.55	□□□□□ -0.24
CLN3-238	ENST00000569430	ERVK-7	P63135	1459 aa		13.55	□□□□□ -0.24
CLN3-238	ENST00000569430	ZMYM3	Q14202	1370 aa		13.55	□□□□□ -0.24
CLN3-238	ENST00000569430	KIN	O60870	393 aa	Known RBP	13.55	□□□□□ -0.24
CLN3-238	ENST00000569430	JARID2	Q92833	1246 aa	Predicted RBP	13.55	□□□□□ -0.24
CLN3-238	ENST00000569430	SIL1	Q9H173	461 aa		13.55	□□□□□ -0.24
CLN3-238	ENST00000569430	FAM177A1	Q8N128	213 aa	Predicted RBP	13.55	□□□□□ -0.24
CLN3-238	ENST00000569430	MYRIP	Q8NFW9	859 aa		13.55	□□□□□ -0.24
CLN3-238	ENST00000569430	CCDC66	A2RUB6	948 aa		13.54	□□□□□ -0.24
CLN3-238	ENST00000569430	U2AF2	P26368	475 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
CLN3-238	ENST00000569430	PSMA5	P28066	241 aa		13.54	□□□□□ -0.24
CLN3-238	ENST00000569430	FAM69C	Q0P6D2	419 aa		13.54	□□□□□ -0.24
CLN3-238	ENST00000569430	PPFIA3	O75145	1194 aa		13.54	□□□□□ -0.24
CLN3-238	ENST00000569430	PTGS1	P23219	599 aa		13.54	□□□□□ -0.24
CLN3-238	ENST00000569430	SIRT2	Q8IXJ6	389 aa		13.54	□□□□□ -0.24
CLN3-238	ENST00000569430	HDAC5	Q9UQL6	1122 aa		13.54	□□□□□ -0.24
CLN3-238	ENST00000569430		A0A1W2PP64	1363 aa		13.54	□□□□□ -0.24
CLN3-238	ENST00000569430	KDM4A	O75164	1064 aa		13.54	□□□□□ -0.24
CLN3-238	ENST00000569430	BLOC1S2	Q6QNY1	142 aa		13.54	□□□□□ -0.24
CLN3-238	ENST00000569430	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.54	□□□□□ -0.24
CLN3-238	ENST00000569430	CLIP2	Q9UDT6	1046 aa		13.53	□□□□□ -0.24
CLN3-238	ENST00000569430	ZFYVE16	Q7Z3T8	1539 aa		13.53	□□□□□ -0.24
CLN3-238	ENST00000569430	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.53	□□□□□ -0.24
CLN3-238	ENST00000569430		A0A0G2JS52	829 aa		13.53	□□□□□ -0.24
CLN3-238	ENST00000569430	PPIP5K1	Q6PFW1	1433 aa		13.53	□□□□□ -0.24
CLN3-238	ENST00000569430	PTPN14	Q15678	1187 aa		13.53	□□□□□ -0.24
CLN3-238	ENST00000569430	PIBF1	Q8WXW3	757 aa		13.53	□□□□□ -0.24
CLN3-238	ENST00000569430	RAB11FIP3	O75154	756 aa		13.52	□□□□□ -0.24
CLN3-238	ENST00000569430	ZNF165	P49910	485 aa		13.52	□□□□□ -0.24
CLN3-238	ENST00000569430	TEX35	Q5T0J7	233 aa		13.52	□□□□□ -0.24
CLN3-238	ENST00000569430	KIF2C	Q99661	725 aa		13.52	□□□□□ -0.24
CLN3-238	ENST00000569430	RIOK3	O14730	519 aa	Known RBP	13.52	□□□□□ -0.25
CLN3-238	ENST00000569430	ME1	P48163	572 aa		13.52	□□□□□ -0.25
CLN3-238	ENST00000569430	NLRP6	P59044	892 aa		13.52	□□□□□ -0.25
CLN3-238	ENST00000569430	FLII	Q13045	1269 aa		13.52	□□□□□ -0.25
CLN3-238	ENST00000569430	FAM173B	Q6P4H8	233 aa		13.52	□□□□□ -0.25
CLN3-238	ENST00000569430	NUDT16	Q96DE0	195 aa	Known RBP	13.52	□□□□□ -0.25
CLN3-238	ENST00000569430	PALD1	Q9ULE6	856 aa		13.52	□□□□□ -0.25
CLN3-238	ENST00000569430	SYT1	P21579	422 aa		13.51	□□□□□ -0.25
CLN3-238	ENST00000569430	NPAT	Q14207	1427 aa		13.51	□□□□□ -0.25
CLN3-238	ENST00000569430	CHML	P26374	656 aa		13.51	□□□□□ -0.25
CLN3-238	ENST00000569430	AACS	Q86V21	672 aa		13.51	□□□□□ -0.25
CLN3-238	ENST00000569430	CHMP4A	Q9BY43	222 aa		13.51	□□□□□ -0.25
CLN3-238	ENST00000569430	SLC52A1	Q9NWF4	448 aa		13.51	□□□□□ -0.25
CLN3-238	ENST00000569430	G2E3	Q7L622	706 aa		13.51	□□□□□ -0.25
CLN3-238	ENST00000569430	LUZP1	Q86V48	1076 aa		13.51	□□□□□ -0.25
CLN3-238	ENST00000569430	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.51	□□□□□ -0.25
CLN3-238	ENST00000569430	MADD	Q8WXG6	1647 aa		13.5	□□□□□ -0.25
CLN3-238	ENST00000569430	BRD1	O95696	1058 aa		13.5	□□□□□ -0.25
CLN3-238	ENST00000569430	CCDC61	Q9Y6R9	512 aa		13.5	□□□□□ -0.25
CLN3-238	ENST00000569430	F13A1	P00488	732 aa		13.5	□□□□□ -0.25
CLN3-238	ENST00000569430	AK2	P54819	239 aa		13.5	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms