RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 CCDC30Q5VVM6 783 aa10.81□□□□□ -0.68
LINC00558-201ENST00000569422 LGR6Q9HBX8 967 aa10.81□□□□□ -0.68
LINC00558-201ENST00000569422 KIAA0232Q92628 1395 aa10.81□□□□□ -0.68
LINC00558-201ENST00000569422 CEP170BQ9Y4F5 1589 aaPredicted RBP10.81□□□□□ -0.68
LINC00558-201ENST00000569422 GNAI2P04899 355 aa10.8□□□□□ -0.68
LINC00558-201ENST00000569422 DLG5Q8TDM6 1919 aa10.8□□□□□ -0.68
LINC00558-201ENST00000569422 RGS12O14924 1447 aa10.8□□□□□ -0.68
LINC00558-201ENST00000569422 SSH2Q76I76 1423 aa10.8□□□□□ -0.68
LINC00558-201ENST00000569422 PNMA6EA0A0J9YXQ4 647 aa10.8□□□□□ -0.68
LINC00558-201ENST00000569422 TRAK2O60296 914 aa10.8□□□□□ -0.68
LINC00558-201ENST00000569422 NBPF6Q5VWK0 638 aa10.8□□□□□ -0.68
LINC00558-201ENST00000569422 ANKLE2Q86XL3 938 aa10.8□□□□□ -0.68
LINC00558-201ENST00000569422 RILPL2Q969X0 211 aa10.8□□□□□ -0.68
LINC00558-201ENST00000569422 NBPF4Q96M43 638 aa10.8□□□□□ -0.68
LINC00558-201ENST00000569422 VIRMAQ69YN4 1812 aaKnown RBP10.8□□□□□ -0.68
LINC00558-201ENST00000569422 PEAK1Q9H792 1746 aa10.8□□□□□ -0.68
LINC00558-201ENST00000569422 TRIM6-TRIM34B2RNG4 842 aa10.79□□□□□ -0.68
LINC00558-201ENST00000569422 CCT4P50991 539 aaKnown RBP10.79□□□□□ -0.68
LINC00558-201ENST00000569422 TAF7Q15545 349 aaPredicted RBP10.79□□□□□ -0.68
LINC00558-201ENST00000569422 MPRIPQ6WCQ1 1025 aa10.79□□□□□ -0.68
LINC00558-201ENST00000569422 ORAI2Q96SN7 254 aa10.79□□□□□ -0.68
LINC00558-201ENST00000569422 IL1RAPL2Q9NP60 686 aa10.79□□□□□ -0.68
LINC00558-201ENST00000569422 LRRFIP2Q9Y608 721 aaKnown RBP10.79□□□□□ -0.68
LINC00558-201ENST00000569422 K7ELQ4 463 aaPredicted RBP10.79□□□□□ -0.68
LINC00558-201ENST00000569422 KCNQ3O43525 872 aa10.79□□□□□ -0.68
LINC00558-201ENST00000569422 NOL8Q76FK4 1167 aaKnown RBP10.79□□□□□ -0.68
LINC00558-201ENST00000569422 TNPO1Q92973 898 aaKnown RBP10.79□□□□□ -0.68
LINC00558-201ENST00000569422 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.79□□□□□ -0.68
LINC00558-201ENST00000569422 RIMS1Q86UR5 1692 aaKnown RBP10.79□□□□□ -0.68
LINC00558-201ENST00000569422 ATP10DQ9P241 1426 aa10.79□□□□□ -0.68
LINC00558-201ENST00000569422 CASC1Q6TDU7 716 aa10.78□□□□□ -0.68
LINC00558-201ENST00000569422 MAP4K4O95819 1239 aaPredicted RBP10.78□□□□□ -0.68
LINC00558-201ENST00000569422 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.78□□□□□ -0.68
LINC00558-201ENST00000569422 TICAM2Q86XR7 235 aa10.77□□□□□ -0.68
LINC00558-201ENST00000569422 SNX21Q969T3 373 aa10.77□□□□□ -0.68
LINC00558-201ENST00000569422 AKAP12Q02952 1782 aa10.77□□□□□ -0.68
LINC00558-201ENST00000569422 FOXD4L5Q5VV16 416 aaPredicted RBP10.77□□□□□ -0.69
LINC00558-201ENST00000569422 FOXD4L4Q8WXT5 416 aaPredicted RBP10.77□□□□□ -0.69
LINC00558-201ENST00000569422 DIP2AQ14689 1571 aa10.77□□□□□ -0.69
LINC00558-201ENST00000569422 KNDC1Q76NI1 1749 aa10.77□□□□□ -0.69
LINC00558-201ENST00000569422 SSFA2P28290 1259 aa10.77□□□□□ -0.69
LINC00558-201ENST00000569422 PDE1AP54750 535 aa10.77□□□□□ -0.69
LINC00558-201ENST00000569422 TEFQ10587 303 aa10.77□□□□□ -0.69
LINC00558-201ENST00000569422 USP26Q9BXU7 913 aa10.77□□□□□ -0.69
LINC00558-201ENST00000569422 UBTFL1P0CB47 393 aaPredicted RBP10.76□□□□□ -0.69
LINC00558-201ENST00000569422 ZNF530Q6P9A1 599 aaPredicted RBP10.76□□□□□ -0.69
LINC00558-201ENST00000569422 NAP1L2Q9ULW6 460 aaPredicted RBP10.76□□□□□ -0.69
LINC00558-201ENST00000569422 KDRP35968 1356 aa10.76□□□□□ -0.69
LINC00558-201ENST00000569422 MAP3K5Q99683 1374 aa10.76□□□□□ -0.69
LINC00558-201ENST00000569422 NUTM1Q86Y26 1132 aa10.76□□□□□ -0.69
LINC00558-201ENST00000569422 ZFP91Q96JP5 570 aaPredicted RBP10.76□□□□□ -0.69
LINC00558-201ENST00000569422 LRRCC1Q9C099 1032 aa10.76□□□□□ -0.69
LINC00558-201ENST00000569422 CHPF2Q9P2E5 772 aa10.76□□□□□ -0.69
LINC00558-201ENST00000569422 GOLGA6L3A6NEY3 463 aa10.75□□□□□ -0.69
LINC00558-201ENST00000569422 KIF24Q5T7B8 1368 aa10.75□□□□□ -0.69
LINC00558-201ENST00000569422 GNAI3P08754 354 aa10.75□□□□□ -0.69
LINC00558-201ENST00000569422 ZC3H6P61129 1189 aaKnown RBP10.75□□□□□ -0.69
LINC00558-201ENST00000569422 PANK2Q9BZ23 570 aa10.75□□□□□ -0.69
LINC00558-201ENST00000569422 BTBD11A6QL63 1104 aa10.75□□□□□ -0.69
LINC00558-201ENST00000569422 SURF6O75683 361 aaKnown RBP10.75□□□□□ -0.69
LINC00558-201ENST00000569422 IP6K1Q92551 441 aa10.75□□□□□ -0.69
LINC00558-201ENST00000569422 PI4KAP2A4QPH2 592 aa10.74□□□□□ -0.69
LINC00558-201ENST00000569422 NCLP19338 710 aaKnown RBP10.74□□□□□ -0.69
LINC00558-201ENST00000569422 TMED8Q6PL24 325 aaPredicted RBP10.74□□□□□ -0.69
LINC00558-201ENST00000569422 PI4KAP1Q8N8J0 262 aa10.74□□□□□ -0.69
LINC00558-201ENST00000569422 USP44Q9H0E7 712 aa10.74□□□□□ -0.69
LINC00558-201ENST00000569422 RGPD8O14715 1765 aaPredicted RBP10.74□□□□□ -0.69
LINC00558-201ENST00000569422 DDX17Q92841 729 aaKnown RBP10.74□□□□□ -0.69
LINC00558-201ENST00000569422 ANO2Q9NQ90 1003 aa10.74□□□□□ -0.69
LINC00558-201ENST00000569422 HTATSF1O43719 755 aaKnown RBP10.73□□□□□ -0.69
LINC00558-201ENST00000569422 NBPF7P0C2Y1 421 aaPredicted RBP10.73□□□□□ -0.69
LINC00558-201ENST00000569422 ZNF592Q92610 1267 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 GBP4Q96PP9 640 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 ARHGAP23Q9P227 1491 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 NRKQ7Z2Y5 1582 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 PRAMEF22A3QJZ6 481 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 DDX11L8A8MPP1 907 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 GCP02774 474 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 MX1P20591 662 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 ATP8B2P98198 1209 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 AIMP1Q12904 312 aaKnown RBP10.73□□□□□ -0.69
LINC00558-201ENST00000569422 PKP1Q13835 747 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 RABEP1Q15276 862 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 ZGPATQ8N5A5 531 aaKnown RBP10.73□□□□□ -0.69
LINC00558-201ENST00000569422 SETD1BQ9UPS6 1966 aaKnown RBP10.73□□□□□ -0.69
LINC00558-201ENST00000569422 ERC2O15083 957 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 SRGAP3O43295 1099 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 OS9Q13438 667 aaPredicted RBP10.73□□□□□ -0.69
LINC00558-201ENST00000569422 PPP1R42Q7Z4L9 355 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 UNC5CLQ8IV45 518 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 CHAMP1Q96JM3 812 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 SRCIN1Q9C0H9 1055 aa10.73□□□□□ -0.69
LINC00558-201ENST00000569422 SLIT1O75093 1534 aa10.72□□□□□ -0.69
LINC00558-201ENST00000569422 REC8O95072 547 aa10.72□□□□□ -0.69
LINC00558-201ENST00000569422 XRCC6P12956 609 aaKnown RBP eCLIP10.72□□□□□ -0.69
LINC00558-201ENST00000569422 C1orf141Q5JVX7 400 aa10.72□□□□□ -0.69
LINC00558-201ENST00000569422 NEK4P51957 841 aa10.72□□□□□ -0.69
LINC00558-201ENST00000569422 RAB3GAP1Q15042 981 aa10.72□□□□□ -0.69
LINC00558-201ENST00000569422 L1TD1Q5T7N2 865 aaKnown RBP10.72□□□□□ -0.69
LINC00558-201ENST00000569422 DDIT3P35638 169 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms