RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 RXRBP28702 533 aa4.37□□□□□ -1.71
VPS35-209ENST00000568642 CEBPAP49715 358 aaPredicted RBP4.37□□□□□ -1.71
VPS35-209ENST00000568642 SKOR1P84550 965 aa4.37□□□□□ -1.71
VPS35-209ENST00000568642 MLECQ14165 292 aa4.37□□□□□ -1.71
VPS35-209ENST00000568642 PWP2Q15269 919 aaKnown RBP4.37□□□□□ -1.71
VPS35-209ENST00000568642 LDLRAD1Q5T700 205 aa4.37□□□□□ -1.71
VPS35-209ENST00000568642 ZNF772Q68DY9 489 aaPredicted RBP4.37□□□□□ -1.71
VPS35-209ENST00000568642 UCN2Q96RP3 112 aa4.37□□□□□ -1.71
VPS35-209ENST00000568642 FRMPD1Q5SYB0 1578 aa4.36□□□□□ -1.71
VPS35-209ENST00000568642 C3P01024 1663 aa4.36□□□□□ -1.71
VPS35-209ENST00000568642 ATG7O95352 703 aa4.36□□□□□ -1.71
VPS35-209ENST00000568642 RECKO95980 971 aa4.36□□□□□ -1.71
VPS35-209ENST00000568642 SSTR3P32745 418 aaPredicted RBP4.36□□□□□ -1.71
VPS35-209ENST00000568642 TAGLNQ01995 201 aaKnown RBP4.36□□□□□ -1.71
VPS35-209ENST00000568642 MORN1Q5T089 497 aa4.36□□□□□ -1.71
VPS35-209ENST00000568642 RC3H1Q5TC82 1133 aaKnown RBP4.36□□□□□ -1.71
VPS35-209ENST00000568642 ZNF385CQ66K41 422 aaPredicted RBP4.36□□□□□ -1.71
VPS35-209ENST00000568642 NPAS4Q8IUM7 802 aa4.36□□□□□ -1.71
VPS35-209ENST00000568642 ANKRD13AQ8IZ07 590 aa4.36□□□□□ -1.71
VPS35-209ENST00000568642 GPATCH3Q96I76 525 aa4.36□□□□□ -1.71
VPS35-209ENST00000568642 HIRIP3Q9BW71 556 aaPredicted RBP4.36□□□□□ -1.71
VPS35-209ENST00000568642 PPP1R12CQ9BZL4 782 aa4.36□□□□□ -1.71
VPS35-209ENST00000568642 TBC1D2BQ9UPU7 963 aa4.36□□□□□ -1.71
VPS35-209ENST00000568642 SUGT1Q9Y2Z0 365 aa4.36□□□□□ -1.71
VPS35-209ENST00000568642 WDR7Q9Y4E6 1490 aa4.36□□□□□ -1.71
VPS35-209ENST00000568642 NUTM2BA6NNL0 878 aaPredicted RBP4.35□□□□□ -1.71
VPS35-209ENST00000568642 NUTM2EB1AL46 878 aaPredicted RBP4.35□□□□□ -1.71
VPS35-209ENST00000568642 ITGB2P05107 769 aa4.35□□□□□ -1.71
VPS35-209ENST00000568642 CSB-PGBD3P0DP91 1061 aa4.35□□□□□ -1.71
VPS35-209ENST00000568642 IRX6P78412 446 aaPredicted RBP4.35□□□□□ -1.71
VPS35-209ENST00000568642 PTGDRQ13258 359 aa4.35□□□□□ -1.71
VPS35-209ENST00000568642 HDGFL1Q5TGJ6 251 aa4.35□□□□□ -1.71
VPS35-209ENST00000568642 NUTM2DQ5VT03 806 aaPredicted RBP4.35□□□□□ -1.71
VPS35-209ENST00000568642 NUTM2AQ8IVF1 878 aaPredicted RBP4.35□□□□□ -1.71
VPS35-209ENST00000568642 GJD4Q96KN9 370 aaPredicted RBP4.35□□□□□ -1.71
VPS35-209ENST00000568642 LIMD1Q9UGP4 676 aa4.35□□□□□ -1.71
VPS35-209ENST00000568642 RIPOR2Q9Y4F9 1068 aa4.35□□□□□ -1.71
VPS35-209ENST00000568642 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.35□□□□□ -1.71
VPS35-209ENST00000568642 ADGRG1Q9Y653 693 aa4.35□□□□□ -1.71
VPS35-209ENST00000568642 ATAD2Q6PL18 1390 aa4.35□□□□□ -1.71
VPS35-209ENST00000568642 NUTM2FA1L443 756 aa4.34□□□□□ -1.71
VPS35-209ENST00000568642 RAPGEF3O95398 923 aa4.34□□□□□ -1.71
VPS35-209ENST00000568642 FBXO33Q7Z6M2 555 aa4.34□□□□□ -1.71
VPS35-209ENST00000568642 GPR161Q8N6U8 529 aaKnown RBP4.34□□□□□ -1.71
VPS35-209ENST00000568642 RBM46Q8TBY0 533 aaKnown RBP4.34□□□□□ -1.71
VPS35-209ENST00000568642 WHAMMQ8TF30 809 aa4.34□□□□□ -1.71
VPS35-209ENST00000568642 CNTNAP3BQ96NU0 1288 aa4.34□□□□□ -1.71
VPS35-209ENST00000568642 SPOCK3Q9BQ16 436 aa4.34□□□□□ -1.71
VPS35-209ENST00000568642 BEGAINQ9BUH8 593 aa4.34□□□□□ -1.71
VPS35-209ENST00000568642 CDCA7Q9BWT1 371 aaPredicted RBP4.34□□□□□ -1.71
VPS35-209ENST00000568642 CNTNAP3Q9BZ76 1288 aa4.34□□□□□ -1.71
VPS35-209ENST00000568642 ALG2Q9H553 416 aa4.34□□□□□ -1.71
VPS35-209ENST00000568642 POLR1AO95602 1720 aaPredicted RBP4.33□□□□□ -1.72
VPS35-209ENST00000568642 ARHGEF12Q9NZN5 1544 aa4.33□□□□□ -1.72
VPS35-209ENST00000568642 RGS12O14924 1447 aa4.33□□□□□ -1.72
VPS35-209ENST00000568642 PTPRGP23470 1445 aa4.33□□□□□ -1.72
VPS35-209ENST00000568642 ANKRD62A6NC57 917 aa4.33□□□□□ -1.72
VPS35-209ENST00000568642 PALM3A6NDB9 673 aaPredicted RBP4.33□□□□□ -1.72
VPS35-209ENST00000568642 MSTNO14793 375 aa4.33□□□□□ -1.72
VPS35-209ENST00000568642 PPFIA3O75145 1194 aa4.33□□□□□ -1.72
VPS35-209ENST00000568642 FMNL1O95466 1100 aaPredicted RBP4.33□□□□□ -1.72
VPS35-209ENST00000568642 PLA2G4EQ3MJ16 856 aa4.33□□□□□ -1.72
VPS35-209ENST00000568642 NAALADL2Q58DX5 795 aa4.33□□□□□ -1.72
VPS35-209ENST00000568642 TNS4Q8IZW8 715 aa4.33□□□□□ -1.72
VPS35-209ENST00000568642 SVOPQ8N4V2 548 aa4.33□□□□□ -1.72
VPS35-209ENST00000568642 UBXN4Q92575 508 aa4.33□□□□□ -1.72
VPS35-209ENST00000568642 FAM217BQ9NTX9 383 aaPredicted RBP4.33□□□□□ -1.72
VPS35-209ENST00000568642 SLC27A5Q9Y2P5 690 aa4.33□□□□□ -1.72
VPS35-209ENST00000568642 EP400Q96L91 3159 aa4.33□□□□□ -1.72
VPS35-209ENST00000568642 CAMTA1Q9Y6Y1 1673 aa4.32□□□□□ -1.72
VPS35-209ENST00000568642 KDM5BQ9UGL1 1544 aa4.32□□□□□ -1.72
VPS35-209ENST00000568642 SHANK2Q9UPX8 1470 aa4.32□□□□□ -1.72
VPS35-209ENST00000568642 MARCH6O60337 910 aa4.32□□□□□ -1.72
VPS35-209ENST00000568642 FCHSD2O94868 740 aa4.32□□□□□ -1.72
VPS35-209ENST00000568642 ABL2P42684 1182 aa4.32□□□□□ -1.72
VPS35-209ENST00000568642 CLK2P49760 499 aaKnown RBP4.32□□□□□ -1.72
VPS35-209ENST00000568642 ZC3H6P61129 1189 aaKnown RBP4.32□□□□□ -1.72
VPS35-209ENST00000568642 MDM2Q00987 491 aaPredicted RBP4.32□□□□□ -1.72
VPS35-209ENST00000568642 MSS51Q4VC12 460 aa4.32□□□□□ -1.72
VPS35-209ENST00000568642 TMEM259Q4ZIN3 620 aa4.32□□□□□ -1.72
VPS35-209ENST00000568642 COL13A1Q5TAT6 717 aaPredicted RBP4.32□□□□□ -1.72
VPS35-209ENST00000568642 KANK3Q6NY19 840 aa4.32□□□□□ -1.72
VPS35-209ENST00000568642 RNF19BQ6ZMZ0 732 aa4.32□□□□□ -1.72
VPS35-209ENST00000568642 DPH6Q7L8W6 267 aa4.32□□□□□ -1.72
VPS35-209ENST00000568642 LARGE2Q8N3Y3 721 aa4.32□□□□□ -1.72
VPS35-209ENST00000568642 PURBQ96QR8 312 aaKnown RBP4.32□□□□□ -1.72
VPS35-209ENST00000568642 GPCPD1Q9NPB8 672 aa4.32□□□□□ -1.72
VPS35-209ENST00000568642 BCCIPQ9P287 314 aaKnown RBP eCLIP4.32□□□□□ -1.72
VPS35-209ENST00000568642 ZMIZ1Q9ULJ6 1067 aa4.32□□□□□ -1.72
VPS35-209ENST00000568642 RICTORQ6R327 1708 aa4.32□□□□□ -1.72
VPS35-209ENST00000568642 UHRF1BP1LA0JNW5 1464 aa4.31□□□□□ -1.72
VPS35-209ENST00000568642 FHAD1B1AJZ9 1412 aa4.31□□□□□ -1.72
VPS35-209ENST00000568642 AKNAQ7Z591 1439 aa4.31□□□□□ -1.72
VPS35-209ENST00000568642 SBNO2Q9Y2G9 1366 aa4.31□□□□□ -1.72
VPS35-209ENST00000568642 SIAH2O43255 324 aa4.31□□□□□ -1.72
VPS35-209ENST00000568642 GIGYF1O75420 1035 aaPredicted RBP4.31□□□□□ -1.72
VPS35-209ENST00000568642 ARHGEF15O94989 841 aa4.31□□□□□ -1.72
VPS35-209ENST00000568642 PROCP04070 461 aa4.31□□□□□ -1.72
VPS35-209ENST00000568642 ERCC3P19447 782 aa4.31□□□□□ -1.72
VPS35-209ENST00000568642 RAD51AP2Q09MP3 1159 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms