RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 MARCH10Q8NA82 808 aaPredicted RBP11.12□□□□□ -0.63
SF3B3-212ENST00000568539 LMOD3Q0VAK6 560 aa11.11□□□□□ -0.63
SF3B3-212ENST00000568539 SALL2Q9Y467 1007 aaPredicted RBP11.11□□□□□ -0.63
SF3B3-212ENST00000568539 ZNF521Q96K83 1311 aa11.1□□□□□ -0.63
SF3B3-212ENST00000568539 KDM6AO15550 1401 aaPredicted RBP11.1□□□□□ -0.63
SF3B3-212ENST00000568539 HSP90AB1P08238 724 aaKnown RBP11.1□□□□□ -0.63
SF3B3-212ENST00000568539 PDE3BQ13370 1112 aa11.1□□□□□ -0.63
SF3B3-212ENST00000568539 MPRIPQ6WCQ1 1025 aa11.1□□□□□ -0.63
SF3B3-212ENST00000568539 MCM10Q7L590 875 aa11.1□□□□□ -0.63
SF3B3-212ENST00000568539 WWC1Q8IX03 1113 aa11.1□□□□□ -0.63
SF3B3-212ENST00000568539 IL17REQ8NFR9 667 aa11.1□□□□□ -0.63
SF3B3-212ENST00000568539 DCAF5Q96JK2 942 aa11.1□□□□□ -0.63
SF3B3-212ENST00000568539 LGR6Q9HBX8 967 aa11.1□□□□□ -0.63
SF3B3-212ENST00000568539 CEMIPQ8WUJ3 1361 aa11.1□□□□□ -0.63
SF3B3-212ENST00000568539 SHANK3Q9BYB0 1731 aa11.09□□□□□ -0.63
SF3B3-212ENST00000568539 RNMTO43148 476 aaKnown RBP11.09□□□□□ -0.63
SF3B3-212ENST00000568539 DCTN1Q14203 1278 aa11.09□□□□□ -0.63
SF3B3-212ENST00000568539 RTF1Q92541 710 aaKnown RBP11.09□□□□□ -0.63
SF3B3-212ENST00000568539 YTHDC1Q96MU7 727 aaKnown RBP11.09□□□□□ -0.63
SF3B3-212ENST00000568539 THUMPD2Q9BTF0 503 aaKnown RBP11.09□□□□□ -0.63
SF3B3-212ENST00000568539 KRT27Q7Z3Y8 459 aa11.08□□□□□ -0.64
SF3B3-212ENST00000568539 BCL9O00512 1426 aa11.08□□□□□ -0.64
SF3B3-212ENST00000568539 ZBED9Q6R2W3 1325 aa11.08□□□□□ -0.64
SF3B3-212ENST00000568539 FAM182BQ5T319 152 aa11.07□□□□□ -0.64
SF3B3-212ENST00000568539 ADAMTS7Q9UKP4 1686 aa11.07□□□□□ -0.64
SF3B3-212ENST00000568539 ERVV-2B6SEH9 535 aa11.06□□□□□ -0.64
SF3B3-212ENST00000568539 WDR63Q8IWG1 891 aa11.06□□□□□ -0.64
SF3B3-212ENST00000568539 MRC1P22897 1456 aa11.06□□□□□ -0.64
SF3B3-212ENST00000568539 CALD1Q05682 793 aaKnown RBP11.05□□□□□ -0.64
SF3B3-212ENST00000568539 SLC52A2Q9HAB3 445 aa11.05□□□□□ -0.64
SF3B3-212ENST00000568539 IL16Q14005 1332 aa11.05□□□□□ -0.64
SF3B3-212ENST00000568539 ZNF853P0CG23 659 aa11.04□□□□□ -0.64
SF3B3-212ENST00000568539 PRIM1P49642 420 aaKnown RBP11.04□□□□□ -0.64
SF3B3-212ENST00000568539 CABP4P57796 275 aa11.04□□□□□ -0.64
SF3B3-212ENST00000568539 GOLGA2Q08379 1002 aa11.04□□□□□ -0.64
SF3B3-212ENST00000568539 TEFQ10587 303 aa11.04□□□□□ -0.64
SF3B3-212ENST00000568539 FAM196AQ6ZSG2 479 aa11.04□□□□□ -0.64
SF3B3-212ENST00000568539 NFATC2IPQ8NCF5 419 aa11.04□□□□□ -0.64
SF3B3-212ENST00000568539 SPOCK2Q92563 424 aa11.04□□□□□ -0.64
SF3B3-212ENST00000568539 CHL1O00533 1208 aa11.03□□□□□ -0.64
SF3B3-212ENST00000568539 TAF7Q15545 349 aaPredicted RBP11.03□□□□□ -0.64
SF3B3-212ENST00000568539 ACSBG1Q96GR2 724 aa11.03□□□□□ -0.64
SF3B3-212ENST00000568539 CFAP44Q96MT7 982 aa11.03□□□□□ -0.64
SF3B3-212ENST00000568539 IFT57Q9NWB7 429 aa11.03□□□□□ -0.64
SF3B3-212ENST00000568539 TOGARAM1Q9Y4F4 1720 aa11.03□□□□□ -0.64
SF3B3-212ENST00000568539 KCNQ2O43526 872 aa11.02□□□□□ -0.65
SF3B3-212ENST00000568539 GNAI1P63096 354 aa11.02□□□□□ -0.65
SF3B3-212ENST00000568539 DEFB132Q7Z7B7 95 aa11.02□□□□□ -0.65
SF3B3-212ENST00000568539 PIGBQ92521 554 aa11.02□□□□□ -0.65
SF3B3-212ENST00000568539 SYTL4Q96C24 671 aaPredicted RBP11.02□□□□□ -0.65
SF3B3-212ENST00000568539 CDCA7LQ96GN5 454 aa11.02□□□□□ -0.65
SF3B3-212ENST00000568539 BABAM1Q9NWV8 329 aa11.02□□□□□ -0.65
SF3B3-212ENST00000568539 TMOD3Q9NYL9 352 aa11.02□□□□□ -0.65
SF3B3-212ENST00000568539 BTBD11A6QL63 1104 aa11.01□□□□□ -0.65
SF3B3-212ENST00000568539 E9PSI1 815 aa11.01□□□□□ -0.65
SF3B3-212ENST00000568539 SLFN5Q08AF3 891 aa11.01□□□□□ -0.65
SF3B3-212ENST00000568539 PTF1AQ7RTS3 328 aa11.01□□□□□ -0.65
SF3B3-212ENST00000568539 TRMT2AQ8IZ69 625 aaKnown RBP11.01□□□□□ -0.65
SF3B3-212ENST00000568539 MBIPQ9NS73 344 aa11.01□□□□□ -0.65
SF3B3-212ENST00000568539 MIS18AQ9NYP9 233 aa11.01□□□□□ -0.65
SF3B3-212ENST00000568539 LAS1LQ9Y4W2 734 aaKnown RBP11.01□□□□□ -0.65
SF3B3-212ENST00000568539 BRWD3Q6RI45 1802 aa11□□□□□ -0.65
SF3B3-212ENST00000568539 DLG5Q8TDM6 1919 aa11□□□□□ -0.65
SF3B3-212ENST00000568539 PSDA5PKW4 1024 aaPredicted RBP11□□□□□ -0.65
SF3B3-212ENST00000568539 TSR2Q969E8 191 aaKnown RBP11□□□□□ -0.65
SF3B3-212ENST00000568539 MYH16Q9H6N6 1097 aa11□□□□□ -0.65
SF3B3-212ENST00000568539 TSPYL4Q9UJ04 414 aa11□□□□□ -0.65
SF3B3-212ENST00000568539 FANCIQ9NVI1 1328 aa11□□□□□ -0.65
SF3B3-212ENST00000568539 DOT1LQ8TEK3 1739 aa11□□□□□ -0.65
SF3B3-212ENST00000568539 SCN11AQ9UI33 1791 aa11□□□□□ -0.65
SF3B3-212ENST00000568539 KCNQ3O43525 872 aa10.99□□□□□ -0.65
SF3B3-212ENST00000568539 SLC39A6Q13433 755 aa10.99□□□□□ -0.65
SF3B3-212ENST00000568539 DUSP27Q5VZP5 1158 aa10.99□□□□□ -0.65
SF3B3-212ENST00000568539 ZNF790Q6PG37 636 aa10.99□□□□□ -0.65
SF3B3-212ENST00000568539 BCL11BQ9C0K0 894 aaPredicted RBP10.99□□□□□ -0.65
SF3B3-212ENST00000568539 ATG3Q9NT62 314 aa10.99□□□□□ -0.65
SF3B3-212ENST00000568539 ASAP1Q9ULH1 1129 aa10.99□□□□□ -0.65
SF3B3-212ENST00000568539 NHSQ6T4R5 1651 aa10.98□□□□□ -0.65
SF3B3-212ENST00000568539 TRIM37O94972 964 aa10.98□□□□□ -0.65
SF3B3-212ENST00000568539 EIF4A1P60842 406 aaKnown RBP10.97□□□□□ -0.65
SF3B3-212ENST00000568539 TTC5Q8N0Z6 440 aa10.97□□□□□ -0.65
SF3B3-212ENST00000568539 KLHL34Q8N239 644 aa10.97□□□□□ -0.65
SF3B3-212ENST00000568539 PLCD3Q8N3E9 789 aa10.97□□□□□ -0.65
SF3B3-212ENST00000568539 SIPA1L3O60292 1781 aaPredicted RBP10.97□□□□□ -0.65
SF3B3-212ENST00000568539 PAPPAQ13219 1627 aa10.96□□□□□ -0.65
SF3B3-212ENST00000568539 KCPQ6ZWJ8 1503 aa10.96□□□□□ -0.65
SF3B3-212ENST00000568539 PALLDQ8WX93 1383 aa10.96□□□□□ -0.65
SF3B3-212ENST00000568539 HEG1Q9ULI3 1381 aa10.96□□□□□ -0.65
SF3B3-212ENST00000568539 SMARCC1Q92922 1105 aaPredicted RBP10.96□□□□□ -0.65
SF3B3-212ENST00000568539 ZNF496Q96IT1 587 aaPredicted RBP10.96□□□□□ -0.65
SF3B3-212ENST00000568539 PTCD1O75127 700 aaKnown RBP10.95□□□□□ -0.66
SF3B3-212ENST00000568539 EXOSC9Q06265 439 aaKnown RBP10.95□□□□□ -0.66
SF3B3-212ENST00000568539 KRT24Q2M2I5 525 aa10.95□□□□□ -0.66
SF3B3-212ENST00000568539 C8orf58Q8NAV2 365 aa10.95□□□□□ -0.66
SF3B3-212ENST00000568539 FMNL2Q96PY5 1086 aa10.95□□□□□ -0.66
SF3B3-212ENST00000568539 GIGYF1O75420 1035 aaPredicted RBP10.94□□□□□ -0.66
SF3B3-212ENST00000568539 PLCB2Q00722 1185 aa10.94□□□□□ -0.66
SF3B3-212ENST00000568539 TSPYL6Q8N831 410 aa10.94□□□□□ -0.66
SF3B3-212ENST00000568539 SLC4A9Q96Q91 983 aa10.94□□□□□ -0.66
SF3B3-212ENST00000568539 KDM3BQ7LBC6 1761 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms