RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 RIPK4P57078 832 aa28.95■■■□□ 2.22
CLN3-234ENST00000568472 ATG3Q9NT62 314 aa28.95■■■□□ 2.22
CLN3-234ENST00000568472 ASAP1Q9ULH1 1129 aa28.95■■■□□ 2.22
CLN3-234ENST00000568472 PALLDQ8WX93 1383 aa28.95■■■□□ 2.22
CLN3-234ENST00000568472 MRC1P22897 1456 aa28.95■■■□□ 2.22
CLN3-234ENST00000568472 ITGB4P16144 1822 aa28.94■■■□□ 2.22
CLN3-234ENST00000568472 SCN11AQ9UI33 1791 aa28.94■■■□□ 2.22
CLN3-234ENST00000568472 NBPF14Q5TI25 921 aa28.93■■■□□ 2.22
CLN3-234ENST00000568472 MCM10Q7L590 875 aa28.91■■■□□ 2.22
CLN3-234ENST00000568472 CCNL1Q9UK58 526 aaPredicted RBP28.91■■■□□ 2.22
CLN3-234ENST00000568472 LOC102724428A0A0B4J2F2 783 aa28.88■■■□□ 2.21
CLN3-234ENST00000568472 SIK1P57059 783 aa28.88■■■□□ 2.21
CLN3-234ENST00000568472 APAF1O14727 1248 aa28.87■■■□□ 2.21
CLN3-234ENST00000568472 DCTN1Q14203 1278 aa28.87■■■□□ 2.21
CLN3-234ENST00000568472 TAF7Q15545 349 aaPredicted RBP28.87■■■□□ 2.21
CLN3-234ENST00000568472 FAM9BQ8IZU0 186 aa28.87■■■□□ 2.21
CLN3-234ENST00000568472 LRRC4BQ9NT99 713 aa28.87■■■□□ 2.21
CLN3-234ENST00000568472 RREB1Q92766 1687 aa28.86■■■□□ 2.21
CLN3-234ENST00000568472 NCBP3Q53F19 620 aaKnown RBP28.86■■■□□ 2.21
CLN3-234ENST00000568472 BTBD11A6QL63 1104 aa28.85■■■□□ 2.21
CLN3-234ENST00000568472 NEUROD2Q15784 382 aa28.85■■■□□ 2.21
CLN3-234ENST00000568472 TTC5Q8N0Z6 440 aa28.85■■■□□ 2.21
CLN3-234ENST00000568472 MIER1Q8N108 512 aa28.85■■■□□ 2.21
CLN3-234ENST00000568472 RRP7AQ9Y3A4 280 aaKnown RBP28.85■■■□□ 2.21
CLN3-234ENST00000568472 LY75O60449 1722 aa28.84■■■□□ 2.21
CLN3-234ENST00000568472 RBM42Q9BTD8 480 aaKnown RBP28.84■■■□□ 2.21
CLN3-234ENST00000568472 ZNF790Q6PG37 636 aa28.83■■■□□ 2.21
CLN3-234ENST00000568472 PTCD1O75127 700 aaKnown RBP28.82■■■□□ 2.2
CLN3-234ENST00000568472 ATP6V1AP38606 617 aa28.82■■■□□ 2.2
CLN3-234ENST00000568472 STK32BQ9NY57 414 aa28.82■■■□□ 2.2
CLN3-234ENST00000568472 TRIM35Q9UPQ4 493 aa28.82■■■□□ 2.2
CLN3-234ENST00000568472 SLC39A6Q13433 755 aa28.81■■■□□ 2.2
CLN3-234ENST00000568472 NGEFQ8N5V2 710 aa28.81■■■□□ 2.2
CLN3-234ENST00000568472 BABAM1Q9NWV8 329 aa28.81■■■□□ 2.2
CLN3-234ENST00000568472 VSIG10Q8N0Z9 540 aa28.8■■■□□ 2.2
CLN3-234ENST00000568472 NUP188Q5SRE5 1749 aa28.8■■■□□ 2.2
CLN3-234ENST00000568472 CALD1Q05682 793 aaKnown RBP28.79■■■□□ 2.2
CLN3-234ENST00000568472 SLC15A2Q16348 729 aa28.79■■■□□ 2.2
CLN3-234ENST00000568472 KCNQ4P56696 695 aa28.78■■■□□ 2.2
CLN3-234ENST00000568472 CCDC27Q2M243 656 aa28.78■■■□□ 2.2
CLN3-234ENST00000568472 THUMPD2Q9BTF0 503 aaKnown RBP28.78■■■□□ 2.2
CLN3-234ENST00000568472 DLG5Q8TDM6 1919 aa28.77■■■□□ 2.2
CLN3-234ENST00000568472 VIRMAQ69YN4 1812 aaKnown RBP28.76■■■□□ 2.19
CLN3-234ENST00000568472 AKT1S1Q96B36 256 aa28.76■■■□□ 2.19
CLN3-234ENST00000568472 FMNL2Q96PY5 1086 aa28.76■■■□□ 2.19
CLN3-234ENST00000568472 SLC4A9Q96Q91 983 aa28.76■■■□□ 2.19
CLN3-234ENST00000568472 ZNF831Q5JPB2 1677 aa28.75■■■□□ 2.19
CLN3-234ENST00000568472 TEX13AQ9BXU3 409 aaPredicted RBP28.75■■■□□ 2.19
CLN3-234ENST00000568472 ANO8Q9HCE9 1232 aaPredicted RBP28.75■■■□□ 2.19
CLN3-234ENST00000568472 SIPA1L3O60292 1781 aaPredicted RBP28.75■■■□□ 2.19
CLN3-234ENST00000568472 PAPPAQ13219 1627 aa28.74■■■□□ 2.19
CLN3-234ENST00000568472 ITPK1Q13572 414 aa28.74■■■□□ 2.19
CLN3-234ENST00000568472 R3HDM1Q15032 1099 aaKnown RBP28.74■■■□□ 2.19
CLN3-234ENST00000568472 ZNF496Q96IT1 587 aaPredicted RBP28.73■■■□□ 2.19
CLN3-234ENST00000568472 RC3H1Q5TC82 1133 aaKnown RBP28.72■■■□□ 2.19
CLN3-234ENST00000568472 TFCP2L1Q9NZI6 479 aa28.72■■■□□ 2.19
CLN3-234ENST00000568472 KCPQ6ZWJ8 1503 aa28.71■■■□□ 2.19
CLN3-234ENST00000568472 LINC00116Q8NCU8 138 aa28.71■■■□□ 2.19
CLN3-234ENST00000568472 ZNF827Q17R98 1081 aa28.7■■■□□ 2.18
CLN3-234ENST00000568472 AK7Q96M32 723 aa28.7■■■□□ 2.18
CLN3-234ENST00000568472 TSPYL4Q9UJ04 414 aa28.7■■■□□ 2.18
CLN3-234ENST00000568472 HEG1Q9ULI3 1381 aa28.7■■■□□ 2.18
CLN3-234ENST00000568472 FLAD1Q8NFF5 587 aa28.69■■■□□ 2.18
CLN3-234ENST00000568472 MIS18AQ9NYP9 233 aa28.69■■■□□ 2.18
CLN3-234ENST00000568472 CNTNAP4Q9C0A0 1308 aa28.69■■■□□ 2.18
CLN3-234ENST00000568472 CHL1O00533 1208 aa28.68■■■□□ 2.18
CLN3-234ENST00000568472 KCNQ3O43525 872 aa28.68■■■□□ 2.18
CLN3-234ENST00000568472 STARD3NLO95772 234 aa28.68■■■□□ 2.18
CLN3-234ENST00000568472 WWC1Q8IX03 1113 aa28.68■■■□□ 2.18
CLN3-234ENST00000568472 CFAP44Q96MT7 982 aa28.68■■■□□ 2.18
CLN3-234ENST00000568472 PSDA5PKW4 1024 aaPredicted RBP28.67■■■□□ 2.18
CLN3-234ENST00000568472 SNRPA1P09661 255 aaKnown RBP28.67■■■□□ 2.18
CLN3-234ENST00000568472 C5P01031 1676 aa28.67■■■□□ 2.18
CLN3-234ENST00000568472 GNAI1P63096 354 aa28.66■■■□□ 2.18
CLN3-234ENST00000568472 DNAJC10Q8IXB1 793 aa28.66■■■□□ 2.18
CLN3-234ENST00000568472 IFT57Q9NWB7 429 aa28.66■■■□□ 2.18
CLN3-234ENST00000568472 CICQ96RK0 1608 aaPredicted RBP28.65■■■□□ 2.18
CLN3-234ENST00000568472 UBR2Q8IWV8 1755 aa28.65■■■□□ 2.18
CLN3-234ENST00000568472 CYP19A1P11511 503 aaPredicted RBP28.65■■■□□ 2.18
CLN3-234ENST00000568472 EIF4A1P60842 406 aaKnown RBP28.64■■■□□ 2.18
CLN3-234ENST00000568472 LAS1LQ9Y4W2 734 aaKnown RBP28.64■■■□□ 2.18
CLN3-234ENST00000568472 IL16Q14005 1332 aa28.64■■■□□ 2.17
CLN3-234ENST00000568472 C4BP0C0L5 1744 aa28.63■■■□□ 2.17
CLN3-234ENST00000568472 SSFA2P28290 1259 aa28.63■■■□□ 2.17
CLN3-234ENST00000568472 CRKLP46109 303 aaKnown RBP28.63■■■□□ 2.17
CLN3-234ENST00000568472 WDR63Q8IWG1 891 aa28.63■■■□□ 2.17
CLN3-234ENST00000568472 TAF1LQ8IZX4 1826 aa28.62■■■□□ 2.17
CLN3-234ENST00000568472 GNPATO15228 680 aa28.62■■■□□ 2.17
CLN3-234ENST00000568472 ZNF853P0CG23 659 aa28.62■■■□□ 2.17
CLN3-234ENST00000568472 CCDC87Q9NVE4 849 aa28.62■■■□□ 2.17
CLN3-234ENST00000568472 RTCBQ9Y3I0 505 aaKnown RBP28.62■■■□□ 2.17
CLN3-234ENST00000568472 RPS6KA4O75676 772 aa28.61■■■□□ 2.17
CLN3-234ENST00000568472 ADRA2BP18089 450 aa28.61■■■□□ 2.17
CLN3-234ENST00000568472 SLC16A10Q8TF71 515 aa28.61■■■□□ 2.17
CLN3-234ENST00000568472 PNPLA7Q6ZV29 1317 aa28.6■■■□□ 2.17
CLN3-234ENST00000568472 GIGYF1O75420 1035 aaPredicted RBP28.59■■■□□ 2.17
CLN3-234ENST00000568472 INTS5Q6P9B9 1019 aaKnown RBP28.59■■■□□ 2.17
CLN3-234ENST00000568472 SALL2Q9Y467 1007 aaPredicted RBP28.58■■■□□ 2.17
CLN3-234ENST00000568472 TJP1Q07157 1748 aa28.57■■■□□ 2.16
CLN3-234ENST00000568472 KDM3BQ7LBC6 1761 aa28.57■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 238.5 ms