RNA–Protein interactions for RNA: ENST00000561276.5

LRRC28-221, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 967 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-221ENST00000561276 DCTN1Q14203 1278 aa13.54□□□□□ -0.24
LRRC28-221ENST00000561276 PTF1AQ7RTS3 328 aa13.54□□□□□ -0.24
LRRC28-221ENST00000561276 KDM6AO15550 1401 aaPredicted RBP13.54□□□□□ -0.24
LRRC28-221ENST00000561276 NHSQ6T4R5 1651 aa13.53□□□□□ -0.24
LRRC28-221ENST00000561276 CABP4P57796 275 aa13.53□□□□□ -0.24
LRRC28-221ENST00000561276 MCM10Q7L590 875 aa13.53□□□□□ -0.24
LRRC28-221ENST00000561276 NFATC2IPQ8NCF5 419 aa13.53□□□□□ -0.24
LRRC28-221ENST00000561276 BCL11BQ9C0K0 894 aaPredicted RBP13.53□□□□□ -0.24
LRRC28-221ENST00000561276 TRIM35Q9UPQ4 493 aa13.52□□□□□ -0.25
LRRC28-221ENST00000561276 BTAF1O14981 1849 aa13.52□□□□□ -0.25
LRRC28-221ENST00000561276 SIPA1L3O60292 1781 aaPredicted RBP13.51□□□□□ -0.25
LRRC28-221ENST00000561276 LMOD3Q0VAK6 560 aa13.51□□□□□ -0.25
LRRC28-221ENST00000561276 CCDC125Q86Z20 511 aa13.51□□□□□ -0.25
LRRC28-221ENST00000561276 PIGBQ92521 554 aa13.51□□□□□ -0.25
LRRC28-221ENST00000561276 SLC52A2Q9HAB3 445 aa13.51□□□□□ -0.25
LRRC28-221ENST00000561276 TMOD3Q9NYL9 352 aa13.51□□□□□ -0.25
LRRC28-221ENST00000561276 SALL2Q9Y467 1007 aaPredicted RBP13.51□□□□□ -0.25
LRRC28-221ENST00000561276 EP400Q96L91 3159 aa13.51□□□□□ -0.25
LRRC28-221ENST00000561276 TNS1Q9HBL0 1735 aaKnown RBP13.5□□□□□ -0.25
LRRC28-221ENST00000561276 CEMIPQ8WUJ3 1361 aa13.5□□□□□ -0.25
LRRC28-221ENST00000561276 TEFQ10587 303 aa13.5□□□□□ -0.25
LRRC28-221ENST00000561276 UPF1Q92900 1129 aaKnown RBP eCLIP13.5□□□□□ -0.25
LRRC28-221ENST00000561276 THUMPD2Q9BTF0 503 aaKnown RBP13.5□□□□□ -0.25
LRRC28-221ENST00000561276 APBA3O96018 575 aa13.49□□□□□ -0.25
LRRC28-221ENST00000561276 SF3B2Q13435 895 aaKnown RBP13.49□□□□□ -0.25
LRRC28-221ENST00000561276 TAF7Q15545 349 aaPredicted RBP13.48□□□□□ -0.25
LRRC28-221ENST00000561276 CCDC27Q2M243 656 aa13.47□□□□□ -0.25
LRRC28-221ENST00000561276 WWC1Q8IX03 1113 aa13.47□□□□□ -0.25
LRRC28-221ENST00000561276 NGEFQ8N5V2 710 aa13.47□□□□□ -0.25
LRRC28-221ENST00000561276 ASAP1Q9ULH1 1129 aa13.47□□□□□ -0.25
LRRC28-221ENST00000561276 BTBD11A6QL63 1104 aa13.46□□□□□ -0.25
LRRC28-221ENST00000561276 PLSCR1O15162 318 aa13.46□□□□□ -0.25
LRRC28-221ENST00000561276 ATG3Q9NT62 314 aa13.46□□□□□ -0.25
LRRC28-221ENST00000561276 MIS18AQ9NYP9 233 aa13.46□□□□□ -0.25
LRRC28-221ENST00000561276 MRC1P22897 1456 aa13.46□□□□□ -0.25
LRRC28-221ENST00000561276 LY75O60449 1722 aa13.45□□□□□ -0.26
LRRC28-221ENST00000561276 SLC39A6Q13433 755 aa13.45□□□□□ -0.26
LRRC28-221ENST00000561276 LAS1LQ9Y4W2 734 aaKnown RBP13.45□□□□□ -0.26
LRRC28-221ENST00000561276 BAG6P46379 1132 aa13.44□□□□□ -0.26
LRRC28-221ENST00000561276 EN1Q05925 392 aaPredicted RBP13.44□□□□□ -0.26
LRRC28-221ENST00000561276 DEFB132Q7Z7B7 95 aa13.44□□□□□ -0.26
LRRC28-221ENST00000561276 SMARCC1Q92922 1105 aaPredicted RBP13.44□□□□□ -0.26
LRRC28-221ENST00000561276 HNRNPUQ00839 825 aaKnown RBP eCLIP13.43□□□□□ -0.26
LRRC28-221ENST00000561276 CALD1Q05682 793 aaKnown RBP13.43□□□□□ -0.26
LRRC28-221ENST00000561276 ZNF790Q6PG37 636 aa13.43□□□□□ -0.26
LRRC28-221ENST00000561276 WDR63Q8IWG1 891 aa13.43□□□□□ -0.26
LRRC28-221ENST00000561276 KDM3BQ7LBC6 1761 aa13.43□□□□□ -0.26
LRRC28-221ENST00000561276 PAPPAQ13219 1627 aa13.42□□□□□ -0.26
LRRC28-221ENST00000561276 CHL1O00533 1208 aa13.42□□□□□ -0.26
LRRC28-221ENST00000561276 KCNQ3O43525 872 aa13.42□□□□□ -0.26
LRRC28-221ENST00000561276 PTCD1O75127 700 aaKnown RBP13.42□□□□□ -0.26
LRRC28-221ENST00000561276 EZH2Q15910 746 aaKnown RBP13.42□□□□□ -0.26
LRRC28-221ENST00000561276 TTC5Q8N0Z6 440 aa13.42□□□□□ -0.26
LRRC28-221ENST00000561276 PROM2Q8N271 834 aa13.42□□□□□ -0.26
LRRC28-221ENST00000561276 CFAP44Q96MT7 982 aa13.42□□□□□ -0.26
LRRC28-221ENST00000561276 CAMKK2Q96RR4 588 aa13.42□□□□□ -0.26
LRRC28-221ENST00000561276 RBM42Q9BTD8 480 aaKnown RBP13.42□□□□□ -0.26
LRRC28-221ENST00000561276 RGPD3A6NKT7 1758 aaPredicted RBP13.42□□□□□ -0.26
LRRC28-221ENST00000561276 RGPD4Q7Z3J3 1758 aa13.42□□□□□ -0.26
LRRC28-221ENST00000561276 UBR2Q8IWV8 1755 aa13.42□□□□□ -0.26
LRRC28-221ENST00000561276 PALLDQ8WX93 1383 aa13.42□□□□□ -0.26
LRRC28-221ENST00000561276 ZNF853P0CG23 659 aa13.41□□□□□ -0.26
LRRC28-221ENST00000561276 GNAI1P63096 354 aa13.41□□□□□ -0.26
LRRC28-221ENST00000561276 TXNRD1Q16881 649 aa13.41□□□□□ -0.26
LRRC28-221ENST00000561276 BABAM1Q9NWV8 329 aa13.41□□□□□ -0.26
LRRC28-221ENST00000561276 TSPYL4Q9UJ04 414 aa13.41□□□□□ -0.26
LRRC28-221ENST00000561276 ZNF521Q96K83 1311 aa13.4□□□□□ -0.26
LRRC28-221ENST00000561276 SOCS7O14512 581 aa13.4□□□□□ -0.26
LRRC28-221ENST00000561276 KCNQ4P56696 695 aa13.4□□□□□ -0.26
LRRC28-221ENST00000561276 ZNF496Q96IT1 587 aaPredicted RBP13.4□□□□□ -0.26
LRRC28-221ENST00000561276 FOXD4L1Q9NU39 408 aa13.4□□□□□ -0.26
LRRC28-221ENST00000561276 IFT57Q9NWB7 429 aa13.4□□□□□ -0.26
LRRC28-221ENST00000561276 TAF1LQ8IZX4 1826 aa13.4□□□□□ -0.26
LRRC28-221ENST00000561276 LOC102724428A0A0B4J2F2 783 aa13.39□□□□□ -0.27
LRRC28-221ENST00000561276 ATP6V1AP38606 617 aa13.39□□□□□ -0.27
LRRC28-221ENST00000561276 SIK1P57059 783 aa13.39□□□□□ -0.27
LRRC28-221ENST00000561276 SLC4A9Q96Q91 983 aa13.39□□□□□ -0.27
LRRC28-221ENST00000561276 LRRC4BQ9NT99 713 aa13.39□□□□□ -0.27
LRRC28-221ENST00000561276 CCNL1Q9UK58 526 aaPredicted RBP13.39□□□□□ -0.27
LRRC28-221ENST00000561276 ZNF831Q5JPB2 1677 aa13.39□□□□□ -0.27
LRRC28-221ENST00000561276 IL16Q14005 1332 aa13.39□□□□□ -0.27
LRRC28-221ENST00000561276 RREB1Q92766 1687 aa13.38□□□□□ -0.27
LRRC28-221ENST00000561276 EIF4A1P60842 406 aaKnown RBP13.38□□□□□ -0.27
LRRC28-221ENST00000561276 GOLGA2Q08379 1002 aa13.38□□□□□ -0.27
LRRC28-221ENST00000561276 FMNL2Q96PY5 1086 aa13.38□□□□□ -0.27
LRRC28-221ENST00000561276 MBIPQ9NS73 344 aa13.38□□□□□ -0.27
LRRC28-221ENST00000561276 KCPQ6ZWJ8 1503 aa13.38□□□□□ -0.27
LRRC28-221ENST00000561276 SLC27A3Q5K4L6 730 aa13.37□□□□□ -0.27
LRRC28-221ENST00000561276 VSIG10Q8N0Z9 540 aa13.37□□□□□ -0.27
LRRC28-221ENST00000561276 C5P01031 1676 aa13.37□□□□□ -0.27
LRRC28-221ENST00000561276 TJP1Q07157 1748 aa13.36□□□□□ -0.27
LRRC28-221ENST00000561276 HEG1Q9ULI3 1381 aa13.36□□□□□ -0.27
LRRC28-221ENST00000561276 ITPK1Q13572 414 aa13.36□□□□□ -0.27
LRRC28-221ENST00000561276 TSR2Q969E8 191 aaKnown RBP13.36□□□□□ -0.27
LRRC28-221ENST00000561276 CDCA7LQ96GN5 454 aa13.36□□□□□ -0.27
LRRC28-221ENST00000561276 ZNF219Q9P2Y4 722 aaPredicted RBP13.36□□□□□ -0.27
LRRC28-221ENST00000561276 COL5A3P25940 1745 aaPredicted RBP13.36□□□□□ -0.27
LRRC28-221ENST00000561276 NUP188Q5SRE5 1749 aa13.36□□□□□ -0.27
LRRC28-221ENST00000561276 GIGYF1O75420 1035 aaPredicted RBP13.35□□□□□ -0.27
LRRC28-221ENST00000561276 SNRPA1P09661 255 aaKnown RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms