RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 MYH16Q9H6N6 1097 aa8.38□□□□□ -1.07
SPG11-221ENST00000560299 LRRC37A3O60309 1634 aa8.38□□□□□ -1.07
SPG11-221ENST00000560299 BRWD3Q6RI45 1802 aa8.38□□□□□ -1.07
SPG11-221ENST00000560299 RGPD3A6NKT7 1758 aaPredicted RBP8.38□□□□□ -1.07
SPG11-221ENST00000560299 RGPD4Q7Z3J3 1758 aa8.38□□□□□ -1.07
SPG11-221ENST00000560299 IL16Q14005 1332 aa8.37□□□□□ -1.07
SPG11-221ENST00000560299 NKX1-1Q15270 411 aaPredicted RBP8.37□□□□□ -1.07
SPG11-221ENST00000560299 C1orf141Q5JVX7 400 aa8.37□□□□□ -1.07
SPG11-221ENST00000560299 CHADLQ6NUI6 762 aa8.37□□□□□ -1.07
SPG11-221ENST00000560299 SPG7Q9UQ90 795 aa8.37□□□□□ -1.07
SPG11-221ENST00000560299 GNAT3A8MTJ3 354 aa8.36□□□□□ -1.07
SPG11-221ENST00000560299 PLSCR1O15162 318 aa8.36□□□□□ -1.07
SPG11-221ENST00000560299 SLFN5Q08AF3 891 aa8.36□□□□□ -1.07
SPG11-221ENST00000560299 MTHFSDQ2M296 383 aaKnown RBP8.36□□□□□ -1.07
SPG11-221ENST00000560299 TRIM35Q9UPQ4 493 aa8.36□□□□□ -1.07
SPG11-221ENST00000560299 RGPD2P0DJD1 1756 aa8.35□□□□□ -1.07
SPG11-221ENST00000560299 GNAI1P63096 354 aa8.35□□□□□ -1.07
SPG11-221ENST00000560299 AKAP4Q5JQC9 854 aa8.35□□□□□ -1.07
SPG11-221ENST00000560299 ZNF530Q6P9A1 599 aaPredicted RBP8.35□□□□□ -1.07
SPG11-221ENST00000560299 BCL11BQ9C0K0 894 aaPredicted RBP8.35□□□□□ -1.07
SPG11-221ENST00000560299 PKD1L3Q7Z443 1732 aa8.34□□□□□ -1.07
SPG11-221ENST00000560299 HSP90AB1P08238 724 aaKnown RBP8.34□□□□□ -1.07
SPG11-221ENST00000560299 TRMT2AQ8IZ69 625 aaKnown RBP8.34□□□□□ -1.07
SPG11-221ENST00000560299 ZCRB1Q8TBF4 217 aaKnown RBP8.34□□□□□ -1.07
SPG11-221ENST00000560299 CDCA7LQ96GN5 454 aa8.34□□□□□ -1.07
SPG11-221ENST00000560299 IFT57Q9NWB7 429 aa8.34□□□□□ -1.07
SPG11-221ENST00000560299 USP35Q9P2H5 1018 aa8.34□□□□□ -1.07
SPG11-221ENST00000560299 DLG5Q8TDM6 1919 aa8.34□□□□□ -1.07
SPG11-221ENST00000560299 MAP3K5Q99683 1374 aa8.34□□□□□ -1.07
SPG11-221ENST00000560299 PCDH11XQ9BZA7 1347 aa8.33□□□□□ -1.08
SPG11-221ENST00000560299 PCDH11YQ9BZA8 1340 aa8.33□□□□□ -1.08
SPG11-221ENST00000560299 NEFLP07196 543 aa8.33□□□□□ -1.08
SPG11-221ENST00000560299 DUSP27Q5VZP5 1158 aa8.33□□□□□ -1.08
SPG11-221ENST00000560299 IFNL2Q8IZJ0 200 aa8.33□□□□□ -1.08
SPG11-221ENST00000560299 MARCH10Q8NA82 808 aaPredicted RBP8.33□□□□□ -1.08
SPG11-221ENST00000560299 CFAP44Q96MT7 982 aa8.33□□□□□ -1.08
SPG11-221ENST00000560299 LAS1LQ9Y4W2 734 aaKnown RBP8.33□□□□□ -1.08
SPG11-221ENST00000560299 MEGF6O75095 1541 aa8.33□□□□□ -1.08
SPG11-221ENST00000560299 SBF2Q86WG5 1849 aa8.32□□□□□ -1.08
SPG11-221ENST00000560299 CT47B1P0C2W7 299 aaPredicted RBP8.32□□□□□ -1.08
SPG11-221ENST00000560299 POTEIP0CG38 1075 aa8.32□□□□□ -1.08
SPG11-221ENST00000560299 BAG6P46379 1132 aa8.32□□□□□ -1.08
SPG11-221ENST00000560299 TEFQ10587 303 aa8.32□□□□□ -1.08
SPG11-221ENST00000560299 MCM10Q7L590 875 aa8.32□□□□□ -1.08
SPG11-221ENST00000560299 BABAM1Q9NWV8 329 aa8.32□□□□□ -1.08
SPG11-221ENST00000560299 RCAN3Q9UKA8 241 aa8.32□□□□□ -1.08
SPG11-221ENST00000560299 SSUH2Q9Y2M2 353 aa8.32□□□□□ -1.08
SPG11-221ENST00000560299 NHSQ6T4R5 1651 aa8.31□□□□□ -1.08
SPG11-221ENST00000560299 SF3B2Q13435 895 aaKnown RBP8.31□□□□□ -1.08
SPG11-221ENST00000560299 DCTN1Q14203 1278 aa8.31□□□□□ -1.08
SPG11-221ENST00000560299 TAF7Q15545 349 aaPredicted RBP8.31□□□□□ -1.08
SPG11-221ENST00000560299 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.31□□□□□ -1.08
SPG11-221ENST00000560299 CHMP4AQ9BY43 222 aa8.31□□□□□ -1.08
SPG11-221ENST00000560299 SHANK3Q9BYB0 1731 aa8.31□□□□□ -1.08
SPG11-221ENST00000560299 TNS1Q9HBL0 1735 aaKnown RBP8.31□□□□□ -1.08
SPG11-221ENST00000560299 KAT6BQ8WYB5 2073 aa8.31□□□□□ -1.08
SPG11-221ENST00000560299 A0A0G2JS52 829 aa8.3□□□□□ -1.08
SPG11-221ENST00000560299 ERVV-2B6SEH9 535 aa8.3□□□□□ -1.08
SPG11-221ENST00000560299 PRR29P0C7W0 189 aa8.3□□□□□ -1.08
SPG11-221ENST00000560299 ZNF853P0CG23 659 aa8.3□□□□□ -1.08
SPG11-221ENST00000560299 ATXN8OSP0DMR3 200 aa8.3□□□□□ -1.08
SPG11-221ENST00000560299 MYT1Q01538 1121 aa8.3□□□□□ -1.08
SPG11-221ENST00000560299 ZNF428Q96B54 188 aa8.3□□□□□ -1.08
SPG11-221ENST00000560299 DCAF5Q96JK2 942 aa8.3□□□□□ -1.08
SPG11-221ENST00000560299 CAMKK2Q96RR4 588 aa8.3□□□□□ -1.08
SPG11-221ENST00000560299 THUMPD2Q9BTF0 503 aaKnown RBP8.3□□□□□ -1.08
SPG11-221ENST00000560299 SUPT16HQ9Y5B9 1047 aaKnown RBP8.3□□□□□ -1.08
SPG11-221ENST00000560299 FANCIQ9NVI1 1328 aa8.29□□□□□ -1.08
SPG11-221ENST00000560299 CHL1O00533 1208 aa8.29□□□□□ -1.08
SPG11-221ENST00000560299 CYP27B1O15528 508 aa8.29□□□□□ -1.08
SPG11-221ENST00000560299 RNMTO43148 476 aaKnown RBP8.29□□□□□ -1.08
SPG11-221ENST00000560299 PHKG2P15735 406 aa8.29□□□□□ -1.08
SPG11-221ENST00000560299 MPRIPQ6WCQ1 1025 aa8.29□□□□□ -1.08
SPG11-221ENST00000560299 IL17REQ8NFR9 667 aa8.29□□□□□ -1.08
SPG11-221ENST00000560299 TSR2Q969E8 191 aaKnown RBP8.29□□□□□ -1.08
SPG11-221ENST00000560299 TSPYL4Q9UJ04 414 aa8.29□□□□□ -1.08
SPG11-221ENST00000560299 ADAMTS7Q9UKP4 1686 aa8.29□□□□□ -1.08
SPG11-221ENST00000560299 ZNF831Q5JPB2 1677 aa8.28□□□□□ -1.08
SPG11-221ENST00000560299 CEMIPQ8WUJ3 1361 aa8.28□□□□□ -1.08
SPG11-221ENST00000560299 EXOSC9Q06265 439 aaKnown RBP8.28□□□□□ -1.08
SPG11-221ENST00000560299 SLC27A3Q5K4L6 730 aa8.28□□□□□ -1.08
SPG11-221ENST00000560299 DDX54Q8TDD1 881 aaKnown RBP8.28□□□□□ -1.08
SPG11-221ENST00000560299 MBIPQ9NS73 344 aa8.28□□□□□ -1.08
SPG11-221ENST00000560299 SOS1Q07889 1333 aaPredicted RBP8.28□□□□□ -1.08
SPG11-221ENST00000560299 BTBD11A6QL63 1104 aa8.27□□□□□ -1.09
SPG11-221ENST00000560299 TRIM37O94972 964 aa8.27□□□□□ -1.09
SPG11-221ENST00000560299 CD44P16070 742 aaKnown RBP8.27□□□□□ -1.09
SPG11-221ENST00000560299 SMARCC1Q92922 1105 aaPredicted RBP8.27□□□□□ -1.09
SPG11-221ENST00000560299 LGR6Q9HBX8 967 aa8.27□□□□□ -1.09
SPG11-221ENST00000560299 RREB1Q92766 1687 aa8.27□□□□□ -1.09
SPG11-221ENST00000560299 APBA3O96018 575 aa8.26□□□□□ -1.09
SPG11-221ENST00000560299 CABP4P57796 275 aa8.26□□□□□ -1.09
SPG11-221ENST00000560299 TWISTNBQ3B726 338 aaPredicted RBP8.26□□□□□ -1.09
SPG11-221ENST00000560299 ALDH1L2Q3SY69 923 aa8.26□□□□□ -1.09
SPG11-221ENST00000560299 SLC52A2Q9HAB3 445 aa8.26□□□□□ -1.09
SPG11-221ENST00000560299 MRC1P22897 1456 aa8.26□□□□□ -1.09
SPG11-221ENST00000560299 CICQ96RK0 1608 aaPredicted RBP8.25□□□□□ -1.09
SPG11-221ENST00000560299 VIRMAQ69YN4 1812 aaKnown RBP8.25□□□□□ -1.09
SPG11-221ENST00000560299 MS4A1P11836 297 aa8.25□□□□□ -1.09
SPG11-221ENST00000560299 CANXP27824 592 aaKnown RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms