RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 TJAP1Q5JTD0 557 aa7.23□□□□□ -1.25
SPG11-220ENST00000559933 PXYLP1Q8TE99 480 aa7.23□□□□□ -1.25
SPG11-220ENST00000559933 CD163L1Q9NR16 1453 aa7.23□□□□□ -1.25
SPG11-220ENST00000559933 TMC1Q8TDI8 760 aa7.22□□□□□ -1.25
SPG11-220ENST00000559933 SIRT1Q96EB6 747 aa7.22□□□□□ -1.25
SPG11-220ENST00000559933 SLC12A5Q9H2X9 1139 aa7.22□□□□□ -1.25
SPG11-220ENST00000559933 PCDHB3Q9Y5E6 796 aa7.22□□□□□ -1.25
SPG11-220ENST00000559933 PPIP5K1Q6PFW1 1433 aa7.21□□□□□ -1.25
SPG11-220ENST00000559933 COPS2P61201 443 aa7.21□□□□□ -1.26
SPG11-220ENST00000559933 METTL3Q86U44 580 aaKnown RBP7.21□□□□□ -1.26
SPG11-220ENST00000559933 NUDT16Q96DE0 195 aaKnown RBP7.21□□□□□ -1.26
SPG11-220ENST00000559933 ITSN1Q15811 1721 aa7.21□□□□□ -1.26
SPG11-220ENST00000559933 A0A1W2PP64 1363 aa7.2□□□□□ -1.26
SPG11-220ENST00000559933 MST1RQ04912 1400 aa7.2□□□□□ -1.26
SPG11-220ENST00000559933 NSD3Q9BZ95 1437 aa7.2□□□□□ -1.26
SPG11-220ENST00000559933 GGCXP38435 758 aa7.2□□□□□ -1.26
SPG11-220ENST00000559933 DIEXFQ68CQ4 756 aaKnown RBP7.2□□□□□ -1.26
SPG11-220ENST00000559933 PMFBP1Q8TBY8 1022 aa7.2□□□□□ -1.26
SPG11-220ENST00000559933 CABP1Q9NZU7 370 aa7.2□□□□□ -1.26
SPG11-220ENST00000559933 AKAP12Q02952 1782 aa7.2□□□□□ -1.26
SPG11-220ENST00000559933 NRKQ7Z2Y5 1582 aa7.2□□□□□ -1.26
SPG11-220ENST00000559933 C1orf167Q5SNV9 1468 aa7.19□□□□□ -1.26
SPG11-220ENST00000559933 MON2Q7Z3U7 1717 aa7.19□□□□□ -1.26
SPG11-220ENST00000559933 CFHP08603 1231 aa7.19□□□□□ -1.26
SPG11-220ENST00000559933 FECHP22830 423 aa7.19□□□□□ -1.26
SPG11-220ENST00000559933 DDX17Q92841 729 aaKnown RBP7.19□□□□□ -1.26
SPG11-220ENST00000559933 ORAI2Q96SN7 254 aa7.19□□□□□ -1.26
SPG11-220ENST00000559933 CARD14Q9BXL6 1004 aa7.19□□□□□ -1.26
SPG11-220ENST00000559933 PANK3Q9H999 370 aa7.19□□□□□ -1.26
SPG11-220ENST00000559933 MSH6P52701 1360 aa7.19□□□□□ -1.26
SPG11-220ENST00000559933 ATAD2Q6PL18 1390 aa7.19□□□□□ -1.26
SPG11-220ENST00000559933 GPR37O15354 613 aa7.18□□□□□ -1.26
SPG11-220ENST00000559933 XPCQ01831 940 aaPredicted RBP7.18□□□□□ -1.26
SPG11-220ENST00000559933 RDH13Q8NBN7 331 aa7.18□□□□□ -1.26
SPG11-220ENST00000559933 ANKARQ7Z5J8 1434 aa7.18□□□□□ -1.26
SPG11-220ENST00000559933 ACTN4O43707 911 aaKnown RBP7.17□□□□□ -1.26
SPG11-220ENST00000559933 CDCA8Q53HL2 280 aa7.17□□□□□ -1.26
SPG11-220ENST00000559933 SULF1Q8IWU6 871 aa7.17□□□□□ -1.26
SPG11-220ENST00000559933 ZNF516Q92618 1163 aa7.17□□□□□ -1.26
SPG11-220ENST00000559933 KIF20BQ96Q89 1820 aa7.17□□□□□ -1.26
SPG11-220ENST00000559933 ANKRD36BQ8N2N9 1353 aa7.17□□□□□ -1.26
SPG11-220ENST00000559933 DCCP43146 1447 aa7.17□□□□□ -1.26
SPG11-220ENST00000559933 ATF3P18847 181 aa7.16□□□□□ -1.26
SPG11-220ENST00000559933 ESCO1Q5FWF5 840 aa7.16□□□□□ -1.26
SPG11-220ENST00000559933 CC2D1BQ5T0F9 858 aaKnown RBP7.16□□□□□ -1.26
SPG11-220ENST00000559933 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.16□□□□□ -1.26
SPG11-220ENST00000559933 C19orf44Q9H6X5 657 aa7.16□□□□□ -1.26
SPG11-220ENST00000559933 DAXXQ9UER7 740 aaPredicted RBP7.16□□□□□ -1.26
SPG11-220ENST00000559933 ACEP12821 1306 aa7.16□□□□□ -1.26
SPG11-220ENST00000559933 KTN1Q86UP2 1357 aaKnown RBP7.16□□□□□ -1.26
SPG11-220ENST00000559933 CPSF1Q10570 1443 aaKnown RBP7.16□□□□□ -1.26
SPG11-220ENST00000559933 NCOA3Q9Y6Q9 1424 aa7.16□□□□□ -1.26
SPG11-220ENST00000559933 KIF1AQ12756 1690 aa7.16□□□□□ -1.26
SPG11-220ENST00000559933 DDX11L8A8MPP1 907 aa7.15□□□□□ -1.26
SPG11-220ENST00000559933 PER1O15534 1290 aaPredicted RBP7.15□□□□□ -1.26
SPG11-220ENST00000559933 ZPR1O75312 459 aa7.15□□□□□ -1.26
SPG11-220ENST00000559933 NR1I2O75469 434 aa7.15□□□□□ -1.26
SPG11-220ENST00000559933 MAP2K5Q13163 448 aa7.15□□□□□ -1.26
SPG11-220ENST00000559933 BLOC1S3Q6QNY0 202 aa7.15□□□□□ -1.26
SPG11-220ENST00000559933 NME9Q86XW9 330 aa7.15□□□□□ -1.26
SPG11-220ENST00000559933 IRX2Q9BZI1 471 aaPredicted RBP7.15□□□□□ -1.26
SPG11-220ENST00000559933 NINLQ9Y2I6 1382 aa7.15□□□□□ -1.26
SPG11-220ENST00000559933 USP6P35125 1406 aa7.15□□□□□ -1.27
SPG11-220ENST00000559933 PIK3C2AO00443 1686 aa7.15□□□□□ -1.27
SPG11-220ENST00000559933 ROBO1Q9Y6N7 1651 aa7.15□□□□□ -1.27
SPG11-220ENST00000559933 TRPM3Q9HCF6 1732 aaPredicted RBP7.15□□□□□ -1.27
SPG11-220ENST00000559933 MARF1Q9Y4F3 1742 aaKnown RBP7.15□□□□□ -1.27
SPG11-220ENST00000559933 POLR3AO14802 1390 aaPredicted RBP7.14□□□□□ -1.27
SPG11-220ENST00000559933 FOXO3O43524 673 aa7.14□□□□□ -1.27
SPG11-220ENST00000559933 SLC10A3P09131 477 aa7.14□□□□□ -1.27
SPG11-220ENST00000559933 NUTM2GQ5VZR2 741 aa7.14□□□□□ -1.27
SPG11-220ENST00000559933 PPP1R18Q6NYC8 613 aa7.14□□□□□ -1.27
SPG11-220ENST00000559933 BRINP3Q76B58 766 aa7.14□□□□□ -1.27
SPG11-220ENST00000559933 PUS7Q96PZ0 661 aaKnown RBP7.14□□□□□ -1.27
SPG11-220ENST00000559933 GGNBP2Q9H3C7 697 aa7.14□□□□□ -1.27
SPG11-220ENST00000559933 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.14□□□□□ -1.27
SPG11-220ENST00000559933 ANKRD26Q9UPS8 1709 aa7.13□□□□□ -1.27
SPG11-220ENST00000559933 PXDNQ92626 1479 aa7.13□□□□□ -1.27
SPG11-220ENST00000559933 EDC4Q6P2E9 1401 aaKnown RBP7.13□□□□□ -1.27
SPG11-220ENST00000559933 PLEKHG3A1L390 1219 aa7.13□□□□□ -1.27
SPG11-220ENST00000559933 FBLN1P23142 703 aa7.13□□□□□ -1.27
SPG11-220ENST00000559933 TNNT2P45379 298 aaPredicted RBP7.13□□□□□ -1.27
SPG11-220ENST00000559933 PIP4K2BP78356 416 aa7.13□□□□□ -1.27
SPG11-220ENST00000559933 CCDC184Q52MB2 194 aa7.13□□□□□ -1.27
SPG11-220ENST00000559933 HDGFL2Q7Z4V5 671 aaPredicted RBP7.13□□□□□ -1.27
SPG11-220ENST00000559933 NGDNQ8NEJ9 315 aaKnown RBP7.13□□□□□ -1.27
SPG11-220ENST00000559933 NKX2-3Q8TAU0 364 aa7.13□□□□□ -1.27
SPG11-220ENST00000559933 NHSL1Q5SYE7 1610 aa7.12□□□□□ -1.27
SPG11-220ENST00000559933 SSH2Q76I76 1423 aa7.12□□□□□ -1.27
SPG11-220ENST00000559933 SLC24A1O60721 1099 aa7.12□□□□□ -1.27
SPG11-220ENST00000559933 KRI1Q8N9T8 703 aaKnown RBP7.12□□□□□ -1.27
SPG11-220ENST00000559933 NLRP7Q8WX94 980 aa7.12□□□□□ -1.27
SPG11-220ENST00000559933 TERF2IPQ9NYB0 399 aa7.12□□□□□ -1.27
SPG11-220ENST00000559933 SLAIN2Q9P270 581 aa7.12□□□□□ -1.27
SPG11-220ENST00000559933 KNSTRNQ9Y448 316 aa7.12□□□□□ -1.27
SPG11-220ENST00000559933 ALS2Q96Q42 1657 aa7.12□□□□□ -1.27
SPG11-220ENST00000559933 PARD3Q8TEW0 1356 aa7.11□□□□□ -1.27
SPG11-220ENST00000559933 TTC21BQ7Z4L5 1316 aa7.11□□□□□ -1.27
SPG11-220ENST00000559933 IRF6O14896 467 aa7.11□□□□□ -1.27
SPG11-220ENST00000559933 LMOD2Q6P5Q4 547 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms