RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ATG3Q9NT62 314 aa17.99■□□□□ 0.47
SHMT2-228ENST00000557302 MRC1P22897 1456 aa17.99■□□□□ 0.47
SHMT2-228ENST00000557302 PSDA5PKW4 1024 aaPredicted RBP17.98■□□□□ 0.47
SHMT2-228ENST00000557302 R3HDM1Q15032 1099 aaKnown RBP17.98■□□□□ 0.47
SHMT2-228ENST00000557302 NFE2L2Q16236 605 aa17.98■□□□□ 0.47
SHMT2-228ENST00000557302 IL17REQ8NFR9 667 aa17.98■□□□□ 0.47
SHMT2-228ENST00000557302 ANO8Q9HCE9 1232 aaPredicted RBP17.98■□□□□ 0.47
SHMT2-228ENST00000557302 ADAMTS7Q9UKP4 1686 aa17.98■□□□□ 0.47
SHMT2-228ENST00000557302 LY75O60449 1722 aa17.98■□□□□ 0.47
SHMT2-228ENST00000557302 HTATSF1O43719 755 aaKnown RBP17.97■□□□□ 0.47
SHMT2-228ENST00000557302 KCNQ4P56696 695 aa17.97■□□□□ 0.47
SHMT2-228ENST00000557302 TEFQ10587 303 aa17.97■□□□□ 0.47
SHMT2-228ENST00000557302 CCDC146Q8IYE0 955 aa17.97■□□□□ 0.47
SHMT2-228ENST00000557302 STK32BQ9NY57 414 aa17.97■□□□□ 0.47
SHMT2-228ENST00000557302 CEMIPQ8WUJ3 1361 aa17.96■□□□□ 0.47
SHMT2-228ENST00000557302 LOC102724428A0A0B4J2F2 783 aa17.96■□□□□ 0.47
SHMT2-228ENST00000557302 HMGB2P26583 209 aaKnown RBP17.96■□□□□ 0.47
SHMT2-228ENST00000557302 SIK1P57059 783 aa17.96■□□□□ 0.47
SHMT2-228ENST00000557302 RUNDC1Q96C34 613 aa17.95■□□□□ 0.46
SHMT2-228ENST00000557302 SLC15A2Q16348 729 aa17.94■□□□□ 0.46
SHMT2-228ENST00000557302 MCM10Q7L590 875 aa17.94■□□□□ 0.46
SHMT2-228ENST00000557302 PAPPAQ13219 1627 aa17.94■□□□□ 0.46
SHMT2-228ENST00000557302 DCTN1Q14203 1278 aa17.93■□□□□ 0.46
SHMT2-228ENST00000557302 RBM42Q9BTD8 480 aaKnown RBP17.93■□□□□ 0.46
SHMT2-228ENST00000557302 LRP5O75197 1615 aa17.93■□□□□ 0.46
SHMT2-228ENST00000557302 PTCD1O75127 700 aaKnown RBP17.92■□□□□ 0.46
SHMT2-228ENST00000557302 ATP6V1AP38606 617 aa17.92■□□□□ 0.46
SHMT2-228ENST00000557302 RIPK4P57078 832 aa17.92■□□□□ 0.46
SHMT2-228ENST00000557302 ZNF827Q17R98 1081 aa17.92■□□□□ 0.46
SHMT2-228ENST00000557302 PNISRQ8TF01 805 aaKnown RBP17.92■□□□□ 0.46
SHMT2-228ENST00000557302 VIRMAQ69YN4 1812 aaKnown RBP17.91■□□□□ 0.46
SHMT2-228ENST00000557302 TMPOP42166 694 aaKnown RBP17.91■□□□□ 0.46
SHMT2-228ENST00000557302 SLC39A6Q13433 755 aa17.91■□□□□ 0.46
SHMT2-228ENST00000557302 AKT1S1Q96B36 256 aa17.91■□□□□ 0.46
SHMT2-228ENST00000557302 LMOD3Q0VAK6 560 aa17.9■□□□□ 0.46
SHMT2-228ENST00000557302 TTC5Q8N0Z6 440 aa17.9■□□□□ 0.46
SHMT2-228ENST00000557302 SLC4A9Q96Q91 983 aa17.9■□□□□ 0.46
SHMT2-228ENST00000557302 RRP7AQ9Y3A4 280 aaKnown RBP17.9■□□□□ 0.46
SHMT2-228ENST00000557302 ITPK1Q13572 414 aa17.89■□□□□ 0.45
SHMT2-228ENST00000557302 NEUROD2Q15784 382 aa17.89■□□□□ 0.45
SHMT2-228ENST00000557302 TFCP2L1Q9NZI6 479 aa17.89■□□□□ 0.45
SHMT2-228ENST00000557302 C5P01031 1676 aa17.88■□□□□ 0.45
SHMT2-228ENST00000557302 BTBD11A6QL63 1104 aa17.88■□□□□ 0.45
SHMT2-228ENST00000557302 DIEXFQ68CQ4 756 aaKnown RBP17.88■□□□□ 0.45
SHMT2-228ENST00000557302 ZNF790Q6PG37 636 aa17.88■□□□□ 0.45
SHMT2-228ENST00000557302 LINC00116Q8NCU8 138 aa17.88■□□□□ 0.45
SHMT2-228ENST00000557302 AK7Q96M32 723 aa17.87■□□□□ 0.45
SHMT2-228ENST00000557302 THUMPD2Q9BTF0 503 aaKnown RBP17.87■□□□□ 0.45
SHMT2-228ENST00000557302 DLG5Q8TDM6 1919 aa17.87■□□□□ 0.45
SHMT2-228ENST00000557302 SIPA1L3O60292 1781 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-228ENST00000557302 APAF1O14727 1248 aa17.86■□□□□ 0.45
SHMT2-228ENST00000557302 TAF7Q15545 349 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-228ENST00000557302 KCPQ6ZWJ8 1503 aa17.86■□□□□ 0.45
SHMT2-228ENST00000557302 ZNF831Q5JPB2 1677 aa17.86■□□□□ 0.45
SHMT2-228ENST00000557302 C4BP0C0L5 1744 aa17.85■□□□□ 0.45
SHMT2-228ENST00000557302 TAF1LQ8IZX4 1826 aa17.85■□□□□ 0.45
SHMT2-228ENST00000557302 PNPLA7Q6ZV29 1317 aa17.84■□□□□ 0.45
SHMT2-228ENST00000557302 VSIG10Q8N0Z9 540 aa17.84■□□□□ 0.45
SHMT2-228ENST00000557302 ZNF496Q96IT1 587 aaPredicted RBP17.84■□□□□ 0.45
SHMT2-228ENST00000557302 FMNL2Q96PY5 1086 aa17.84■□□□□ 0.45
SHMT2-228ENST00000557302 CNTNAP4Q9C0A0 1308 aa17.83■□□□□ 0.44
SHMT2-228ENST00000557302 KCNQ3O43525 872 aa17.83■□□□□ 0.44
SHMT2-228ENST00000557302 DNAJC10Q8IXB1 793 aa17.83■□□□□ 0.44
SHMT2-228ENST00000557302 FAM9BQ8IZU0 186 aa17.83■□□□□ 0.44
SHMT2-228ENST00000557302 PDGFDQ9GZP0 370 aaPredicted RBP17.83■□□□□ 0.44
SHMT2-228ENST00000557302 TRIM35Q9UPQ4 493 aa17.83■□□□□ 0.44
SHMT2-228ENST00000557302 HEG1Q9ULI3 1381 aa17.82■□□□□ 0.44
SHMT2-228ENST00000557302 UBR2Q8IWV8 1755 aa17.82■□□□□ 0.44
SHMT2-228ENST00000557302 GNPATO15228 680 aa17.82■□□□□ 0.44
SHMT2-228ENST00000557302 RC3H1Q5TC82 1133 aaKnown RBP17.82■□□□□ 0.44
SHMT2-228ENST00000557302 FLAD1Q8NFF5 587 aa17.82■□□□□ 0.44
SHMT2-228ENST00000557302 MIS18AQ9NYP9 233 aa17.82■□□□□ 0.44
SHMT2-228ENST00000557302 CICQ96RK0 1608 aaPredicted RBP17.81■□□□□ 0.44
SHMT2-228ENST00000557302 CCER2I3L3R5 266 aa17.81■□□□□ 0.44
SHMT2-228ENST00000557302 CRKLP46109 303 aaKnown RBP17.81■□□□□ 0.44
SHMT2-228ENST00000557302 CASZ1Q86V15 1759 aa17.81■□□□□ 0.44
SHMT2-228ENST00000557302 TJP1Q07157 1748 aa17.81■□□□□ 0.44
SHMT2-228ENST00000557302 PHF14O94880 888 aa17.8■□□□□ 0.44
SHMT2-228ENST00000557302 ZBTB7AO95365 584 aa17.8■□□□□ 0.44
SHMT2-228ENST00000557302 SSFA2P28290 1259 aa17.8■□□□□ 0.44
SHMT2-228ENST00000557302 QSER1Q2KHR3 1735 aa17.8■□□□□ 0.44
SHMT2-228ENST00000557302 COL5A3P25940 1745 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-228ENST00000557302 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.79■□□□□ 0.44
SHMT2-228ENST00000557302 AMIGO3Q86WK7 504 aa17.79■□□□□ 0.44
SHMT2-228ENST00000557302 COL23A1Q86Y22 540 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-228ENST00000557302 SLC16A10Q8TF71 515 aa17.79■□□□□ 0.44
SHMT2-228ENST00000557302 TEX13AQ9BXU3 409 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-228ENST00000557302 SPON1Q9HCB6 807 aa17.79■□□□□ 0.44
SHMT2-228ENST00000557302 RTCBQ9Y3I0 505 aaKnown RBP17.79■□□□□ 0.44
SHMT2-228ENST00000557302 TUBGCP6Q96RT7 1819 aa17.79■□□□□ 0.44
SHMT2-228ENST00000557302 STARD3NLO95772 234 aa17.78■□□□□ 0.44
SHMT2-228ENST00000557302 CYP19A1P11511 503 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-228ENST00000557302 MTFR1LQ9H019 292 aa17.78■□□□□ 0.44
SHMT2-228ENST00000557302 CCDC87Q9NVE4 849 aa17.78■□□□□ 0.44
SHMT2-228ENST00000557302 BABAM1Q9NWV8 329 aa17.78■□□□□ 0.44
SHMT2-228ENST00000557302 TSPYL4Q9UJ04 414 aa17.78■□□□□ 0.44
SHMT2-228ENST00000557302 RPS6KA4O75676 772 aa17.77■□□□□ 0.44
SHMT2-228ENST00000557302 SNRPA1P09661 255 aaKnown RBP17.77■□□□□ 0.44
SHMT2-228ENST00000557302 UBR3Q6ZT12 1888 aa17.76■□□□□ 0.43
SHMT2-228ENST00000557302 CALD1Q05682 793 aaKnown RBP17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 111.2 ms