RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 SIPA1L3O60292 1781 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-227ENST00000557269 TNS1Q9HBL0 1735 aaKnown RBP16.82■□□□□ 0.28
SHMT2-227ENST00000557269 TEFQ10587 303 aa16.82■□□□□ 0.28
SHMT2-227ENST00000557269 NCBP3Q53F19 620 aaKnown RBP16.82■□□□□ 0.28
SHMT2-227ENST00000557269 UPF1Q92900 1129 aaKnown RBP eCLIP16.82■□□□□ 0.28
SHMT2-227ENST00000557269 ATG3Q9NT62 314 aa16.82■□□□□ 0.28
SHMT2-227ENST00000557269 ASAP1Q9ULH1 1129 aa16.82■□□□□ 0.28
SHMT2-227ENST00000557269 KCNQ3O43525 872 aa16.81■□□□□ 0.28
SHMT2-227ENST00000557269 SLC39A6Q13433 755 aa16.81■□□□□ 0.28
SHMT2-227ENST00000557269 TAF7Q15545 349 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-227ENST00000557269 ZNF521Q96K83 1311 aa16.8■□□□□ 0.28
SHMT2-227ENST00000557269 APBA3O96018 575 aa16.8■□□□□ 0.28
SHMT2-227ENST00000557269 HNRNPUQ00839 825 aaKnown RBP eCLIP16.8■□□□□ 0.28
SHMT2-227ENST00000557269 BTBD11A6QL63 1104 aa16.79■□□□□ 0.28
SHMT2-227ENST00000557269 NGEFQ8N5V2 710 aa16.78■□□□□ 0.28
SHMT2-227ENST00000557269 SPINK5Q9NQ38 1064 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-227ENST00000557269 LAS1LQ9Y4W2 734 aaKnown RBP16.78■□□□□ 0.28
SHMT2-227ENST00000557269 PAPPAQ13219 1627 aa16.78■□□□□ 0.28
SHMT2-227ENST00000557269 CHL1O00533 1208 aa16.77■□□□□ 0.28
SHMT2-227ENST00000557269 ZNF853P0CG23 659 aa16.77■□□□□ 0.28
SHMT2-227ENST00000557269 DEFB132Q7Z7B7 95 aa16.77■□□□□ 0.28
SHMT2-227ENST00000557269 KCNQ4P56696 695 aa16.76■□□□□ 0.27
SHMT2-227ENST00000557269 EN1Q05925 392 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-227ENST00000557269 ZNF790Q6PG37 636 aa16.76■□□□□ 0.27
SHMT2-227ENST00000557269 WDR63Q8IWG1 891 aa16.76■□□□□ 0.27
SHMT2-227ENST00000557269 PROM2Q8N271 834 aa16.76■□□□□ 0.27
SHMT2-227ENST00000557269 PALLDQ8WX93 1383 aa16.76■□□□□ 0.27
SHMT2-227ENST00000557269 PLSCR1O15162 318 aa16.75■□□□□ 0.27
SHMT2-227ENST00000557269 PTCD1O75127 700 aaKnown RBP16.75■□□□□ 0.27
SHMT2-227ENST00000557269 CCDC125Q86Z20 511 aa16.75■□□□□ 0.27
SHMT2-227ENST00000557269 CFAP44Q96MT7 982 aa16.75■□□□□ 0.27
SHMT2-227ENST00000557269 SLC4A9Q96Q91 983 aa16.75■□□□□ 0.27
SHMT2-227ENST00000557269 CAMKK2Q96RR4 588 aa16.75■□□□□ 0.27
SHMT2-227ENST00000557269 KCPQ6ZWJ8 1503 aa16.75■□□□□ 0.27
SHMT2-227ENST00000557269 SF3B2Q13435 895 aaKnown RBP16.74■□□□□ 0.27
SHMT2-227ENST00000557269 EZH2Q15910 746 aaKnown RBP16.74■□□□□ 0.27
SHMT2-227ENST00000557269 SMARCC1Q92922 1105 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-227ENST00000557269 CDCA7LQ96GN5 454 aa16.74■□□□□ 0.27
SHMT2-227ENST00000557269 ZNF496Q96IT1 587 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-227ENST00000557269 MBIPQ9NS73 344 aa16.74■□□□□ 0.27
SHMT2-227ENST00000557269 IFT57Q9NWB7 429 aa16.74■□□□□ 0.27
SHMT2-227ENST00000557269 TSPYL4Q9UJ04 414 aa16.74■□□□□ 0.27
SHMT2-227ENST00000557269 KDM3BQ7LBC6 1761 aa16.74■□□□□ 0.27
SHMT2-227ENST00000557269 IL16Q14005 1332 aa16.73■□□□□ 0.27
SHMT2-227ENST00000557269 CALD1Q05682 793 aaKnown RBP16.73■□□□□ 0.27
SHMT2-227ENST00000557269 TSR2Q969E8 191 aaKnown RBP16.73■□□□□ 0.27
SHMT2-227ENST00000557269 YTHDC1Q96MU7 727 aaKnown RBP16.73■□□□□ 0.27
SHMT2-227ENST00000557269 RBM42Q9BTD8 480 aaKnown RBP16.73■□□□□ 0.27
SHMT2-227ENST00000557269 UBR2Q8IWV8 1755 aa16.72■□□□□ 0.27
SHMT2-227ENST00000557269 LOC102724428A0A0B4J2F2 783 aa16.72■□□□□ 0.27
SHMT2-227ENST00000557269 SIK1P57059 783 aa16.72■□□□□ 0.27
SHMT2-227ENST00000557269 EIF4A1P60842 406 aaKnown RBP16.72■□□□□ 0.27
SHMT2-227ENST00000557269 GNAI1P63096 354 aa16.72■□□□□ 0.27
SHMT2-227ENST00000557269 TXNRD1Q16881 649 aa16.72■□□□□ 0.27
SHMT2-227ENST00000557269 KRT24Q2M2I5 525 aa16.72■□□□□ 0.27
SHMT2-227ENST00000557269 LRRC4BQ9NT99 713 aa16.72■□□□□ 0.27
SHMT2-227ENST00000557269 BABAM1Q9NWV8 329 aa16.72■□□□□ 0.27
SHMT2-227ENST00000557269 LY75O60449 1722 aa16.72■□□□□ 0.27
SHMT2-227ENST00000557269 PRAMEF22A3QJZ6 481 aa16.71■□□□□ 0.27
SHMT2-227ENST00000557269 BAG6P46379 1132 aa16.71■□□□□ 0.27
SHMT2-227ENST00000557269 GOLGA2Q08379 1002 aa16.71■□□□□ 0.27
SHMT2-227ENST00000557269 ITPK1Q13572 414 aa16.71■□□□□ 0.27
SHMT2-227ENST00000557269 TTC5Q8N0Z6 440 aa16.71■□□□□ 0.27
SHMT2-227ENST00000557269 CCNL1Q9UK58 526 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-227ENST00000557269 ZBED9Q6R2W3 1325 aa16.7■□□□□ 0.26
SHMT2-227ENST00000557269 FANCIQ9NVI1 1328 aa16.7■□□□□ 0.26
SHMT2-227ENST00000557269 HEG1Q9ULI3 1381 aa16.69■□□□□ 0.26
SHMT2-227ENST00000557269 ATP6V1AP38606 617 aa16.69■□□□□ 0.26
SHMT2-227ENST00000557269 SLFN5Q08AF3 891 aa16.69■□□□□ 0.26
SHMT2-227ENST00000557269 FMNL2Q96PY5 1086 aa16.69■□□□□ 0.26
SHMT2-227ENST00000557269 DNAJC10Q8IXB1 793 aa16.68■□□□□ 0.26
SHMT2-227ENST00000557269 RGPD3A6NKT7 1758 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-227ENST00000557269 RGPD4Q7Z3J3 1758 aa16.68■□□□□ 0.26
SHMT2-227ENST00000557269 GIGYF1O75420 1035 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-227ENST00000557269 TRMT2AQ8IZ69 625 aaKnown RBP16.67■□□□□ 0.26
SHMT2-227ENST00000557269 C8orf58Q8NAV2 365 aa16.67■□□□□ 0.26
SHMT2-227ENST00000557269 LINC00116Q8NCU8 138 aa16.67■□□□□ 0.26
SHMT2-227ENST00000557269 TJP1Q07157 1748 aa16.67■□□□□ 0.26
SHMT2-227ENST00000557269 E9PSI1 815 aa16.66■□□□□ 0.26
SHMT2-227ENST00000557269 SOCS7O14512 581 aa16.66■□□□□ 0.26
SHMT2-227ENST00000557269 SLC27A3Q5K4L6 730 aa16.66■□□□□ 0.26
SHMT2-227ENST00000557269 TSPYL6Q8N831 410 aa16.66■□□□□ 0.26
SHMT2-227ENST00000557269 USP16Q9Y5T5 823 aa16.66■□□□□ 0.26
SHMT2-227ENST00000557269 ELL2O00472 640 aaPredicted RBP16.65■□□□□ 0.26
SHMT2-227ENST00000557269 VSIG10Q8N0Z9 540 aa16.65■□□□□ 0.26
SHMT2-227ENST00000557269 MYH16Q9H6N6 1097 aa16.65■□□□□ 0.26
SHMT2-227ENST00000557269 C5P01031 1676 aa16.65■□□□□ 0.26
SHMT2-227ENST00000557269 RREB1Q92766 1687 aa16.65■□□□□ 0.26
SHMT2-227ENST00000557269 SNRPA1P09661 255 aaKnown RBP16.64■□□□□ 0.25
SHMT2-227ENST00000557269 CYP19A1P11511 503 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-227ENST00000557269 EXOSC9Q06265 439 aaKnown RBP16.64■□□□□ 0.25
SHMT2-227ENST00000557269 DUSP27Q5VZP5 1158 aa16.64■□□□□ 0.25
SHMT2-227ENST00000557269 ZNF831Q5JPB2 1677 aa16.64■□□□□ 0.25
SHMT2-227ENST00000557269 NUP188Q5SRE5 1749 aa16.63■□□□□ 0.25
SHMT2-227ENST00000557269 TAF1LQ8IZX4 1826 aa16.63■□□□□ 0.25
SHMT2-227ENST00000557269 CICQ96RK0 1608 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-227ENST00000557269 COL5A3P25940 1745 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-227ENST00000557269 INTS5Q6P9B9 1019 aaKnown RBP16.62■□□□□ 0.25
SHMT2-227ENST00000557269 ANO8Q9HCE9 1232 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-227ENST00000557269 ZNF827Q17R98 1081 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 195.9 ms