RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 CTC1Q2NKJ3 1217 aa10.34□□□□□ -0.75
LINC00643-204ENST00000555934 CLP1Q92989 425 aaKnown RBP10.34□□□□□ -0.75
LINC00643-204ENST00000555934 CAPN5O15484 640 aaPredicted RBP10.33□□□□□ -0.76
LINC00643-204ENST00000555934 SMCPP49901 116 aaPredicted RBP10.33□□□□□ -0.76
LINC00643-204ENST00000555934 SWI5Q1ZZU3 235 aa10.33□□□□□ -0.76
LINC00643-204ENST00000555934 PHLDB3Q6NSJ2 640 aa10.33□□□□□ -0.76
LINC00643-204ENST00000555934 TNS4Q8IZW8 715 aa10.33□□□□□ -0.76
LINC00643-204ENST00000555934 CRIPAKQ8N1N5 446 aa10.33□□□□□ -0.76
LINC00643-204ENST00000555934 ADH1AP07327 375 aa10.32□□□□□ -0.76
LINC00643-204ENST00000555934 RELBQ01201 579 aa10.32□□□□□ -0.76
LINC00643-204ENST00000555934 LCE2AQ5TA79 106 aaPredicted RBP10.32□□□□□ -0.76
LINC00643-204ENST00000555934 AXIN1O15169 862 aa10.31□□□□□ -0.76
LINC00643-204ENST00000555934 GNRH1P01148 92 aa10.31□□□□□ -0.76
LINC00643-204ENST00000555934 INHAP05111 366 aa10.31□□□□□ -0.76
LINC00643-204ENST00000555934 SSFA2P28290 1259 aa10.31□□□□□ -0.76
LINC00643-204ENST00000555934 GZF1Q9H116 711 aaPredicted RBP10.31□□□□□ -0.76
LINC00643-204ENST00000555934 ZNF395Q9H8N7 513 aaPredicted RBP10.31□□□□□ -0.76
LINC00643-204ENST00000555934 ST8SIA5O15466 376 aa10.3□□□□□ -0.76
LINC00643-204ENST00000555934 KCNA1Q09470 495 aa10.3□□□□□ -0.76
LINC00643-204ENST00000555934 B4GALNT3Q6L9W6 998 aa10.3□□□□□ -0.76
LINC00643-204ENST00000555934 Q6ZVU0 165 aa10.3□□□□□ -0.76
LINC00643-204ENST00000555934 MEIOBQ8N635 442 aa10.3□□□□□ -0.76
LINC00643-204ENST00000555934 KDF1Q8NAX2 398 aaPredicted RBP10.3□□□□□ -0.76
LINC00643-204ENST00000555934 AAASQ9NRG9 546 aa10.3□□□□□ -0.76
LINC00643-204ENST00000555934 IVNS1ABPQ9Y6Y0 642 aa10.3□□□□□ -0.76
LINC00643-204ENST00000555934 MEN1O00255 615 aa10.29□□□□□ -0.76
LINC00643-204ENST00000555934 IL2RAP01589 272 aa10.29□□□□□ -0.76
LINC00643-204ENST00000555934 ESCO1Q5FWF5 840 aa10.29□□□□□ -0.76
LINC00643-204ENST00000555934 TBCELQ5QJ74 424 aa10.29□□□□□ -0.76
LINC00643-204ENST00000555934 A0A1W2PRU2 124 aa10.28□□□□□ -0.76
LINC00643-204ENST00000555934 BACH1O14867 736 aa10.28□□□□□ -0.76
LINC00643-204ENST00000555934 OCLNQ16625 522 aa10.28□□□□□ -0.76
LINC00643-204ENST00000555934 PURBQ96QR8 312 aaKnown RBP10.28□□□□□ -0.76
LINC00643-204ENST00000555934 MKNK1Q9BUB5 465 aa10.28□□□□□ -0.76
LINC00643-204ENST00000555934 M0R2N6 131 aa10.27□□□□□ -0.77
LINC00643-204ENST00000555934 PTGIRP43119 386 aa10.27□□□□□ -0.77
LINC00643-204ENST00000555934 SCG3Q8WXD2 468 aaKnown RBP10.27□□□□□ -0.77
LINC00643-204ENST00000555934 CNKSR1Q969H4 720 aa10.27□□□□□ -0.77
LINC00643-204ENST00000555934 TSPAN10Q9H1Z9 355 aaPredicted RBP10.27□□□□□ -0.77
LINC00643-204ENST00000555934 CXXC1Q9P0U4 656 aaPredicted RBP10.27□□□□□ -0.77
LINC00643-204ENST00000555934 WASLO00401 505 aaPredicted RBP10.26□□□□□ -0.77
LINC00643-204ENST00000555934 CHMP7Q8WUX9 453 aaPredicted RBP10.26□□□□□ -0.77
LINC00643-204ENST00000555934 BMP1P13497 986 aa10.25□□□□□ -0.77
LINC00643-204ENST00000555934 TLR1Q15399 786 aa10.25□□□□□ -0.77
LINC00643-204ENST00000555934 TREML4Q6UXN2 200 aa10.25□□□□□ -0.77
LINC00643-204ENST00000555934 XAGE2Q96GT9 111 aa10.25□□□□□ -0.77
LINC00643-204ENST00000555934 PATL2C9JE40 543 aaKnown RBP10.24□□□□□ -0.77
LINC00643-204ENST00000555934 SMTNP53814 917 aa10.24□□□□□ -0.77
LINC00643-204ENST00000555934 EPHA4P54764 986 aa10.24□□□□□ -0.77
LINC00643-204ENST00000555934 FKBP5Q13451 457 aaPredicted RBP10.24□□□□□ -0.77
LINC00643-204ENST00000555934 MRPL14Q6P1L8 145 aaKnown RBP10.24□□□□□ -0.77
LINC00643-204ENST00000555934 LINC00528Q8N1L1 170 aa10.24□□□□□ -0.77
LINC00643-204ENST00000555934 NLRP3Q96P20 1036 aa10.24□□□□□ -0.77
LINC00643-204ENST00000555934 ESYT1Q9BSJ8 1104 aa10.24□□□□□ -0.77
LINC00643-204ENST00000555934 TSEN34Q9BSV6 310 aaKnown RBP10.24□□□□□ -0.77
LINC00643-204ENST00000555934 USP3Q9Y6I4 520 aa10.24□□□□□ -0.77
LINC00643-204ENST00000555934 A6NJY4 79 aa10.23□□□□□ -0.77
LINC00643-204ENST00000555934 WEE1P30291 646 aa10.23□□□□□ -0.77
LINC00643-204ENST00000555934 SERPINB4P48594 390 aa10.23□□□□□ -0.77
LINC00643-204ENST00000555934 CLN3Q13286 438 aa10.23□□□□□ -0.77
LINC00643-204ENST00000555934 CAPN12Q6ZSI9 719 aa10.23□□□□□ -0.77
LINC00643-204ENST00000555934 TRIM46Q7Z4K8 759 aa10.23□□□□□ -0.77
LINC00643-204ENST00000555934 SLC9A9Q8IVB4 645 aa10.23□□□□□ -0.77
LINC00643-204ENST00000555934 SLC4A9Q96Q91 983 aa10.23□□□□□ -0.77
LINC00643-204ENST00000555934 ATAD2Q6PL18 1390 aa10.23□□□□□ -0.77
LINC00643-204ENST00000555934 UPP2O95045 317 aa10.22□□□□□ -0.77
LINC00643-204ENST00000555934 ARID4AP29374 1257 aaPredicted RBP10.22□□□□□ -0.77
LINC00643-204ENST00000555934 CENPCQ03188 943 aa10.22□□□□□ -0.77
LINC00643-204ENST00000555934 TXNDC2Q86VQ3 553 aa10.22□□□□□ -0.77
LINC00643-204ENST00000555934 CCER1Q8TC90 406 aaPredicted RBP10.22□□□□□ -0.77
LINC00643-204ENST00000555934 ATP13A2Q9NQ11 1180 aa10.22□□□□□ -0.77
LINC00643-204ENST00000555934 SCHIP1Q9P0W5 487 aaPredicted RBP10.22□□□□□ -0.77
LINC00643-204ENST00000555934 DACH1Q9UI36 760 aa10.22□□□□□ -0.77
LINC00643-204ENST00000555934 C21orf2O43822 256 aa10.21□□□□□ -0.77
LINC00643-204ENST00000555934 PPP1R12BO60237 982 aaPredicted RBP10.21□□□□□ -0.77
LINC00643-204ENST00000555934 C6orf118Q5T5N4 469 aa10.21□□□□□ -0.77
LINC00643-204ENST00000555934 INSM2Q96T92 566 aaPredicted RBP10.21□□□□□ -0.77
LINC00643-204ENST00000555934 SEPT3Q9UH03 358 aa10.21□□□□□ -0.77
LINC00643-204ENST00000555934 ABL1P00519 1130 aa10.2□□□□□ -0.78
LINC00643-204ENST00000555934 IGFBP4P22692 258 aa10.2□□□□□ -0.78
LINC00643-204ENST00000555934 SCARF1Q14162 830 aa10.2□□□□□ -0.78
LINC00643-204ENST00000555934 NAA30Q147X3 362 aaPredicted RBP10.2□□□□□ -0.78
LINC00643-204ENST00000555934 POLMQ9NP87 494 aaPredicted RBP10.2□□□□□ -0.78
LINC00643-204ENST00000555934 ANO2Q9NQ90 1003 aa10.2□□□□□ -0.78
LINC00643-204ENST00000555934 HRH3Q9Y5N1 445 aa10.2□□□□□ -0.78
LINC00643-204ENST00000555934 BMP2P12643 396 aa10.19□□□□□ -0.78
LINC00643-204ENST00000555934 FOXK2Q01167 660 aa10.19□□□□□ -0.78
LINC00643-204ENST00000555934 TAS1R3Q7RTX0 852 aa10.19□□□□□ -0.78
LINC00643-204ENST00000555934 GNEQ9Y223 722 aaKnown RBP10.19□□□□□ -0.78
LINC00643-204ENST00000555934 SPINT1O43278 529 aa10.18□□□□□ -0.78
LINC00643-204ENST00000555934 ZNF211Q13398 564 aaPredicted RBP10.18□□□□□ -0.78
LINC00643-204ENST00000555934 MTFR1Q15390 333 aa10.18□□□□□ -0.78
LINC00643-204ENST00000555934 TMCO4Q5TGY1 634 aa10.18□□□□□ -0.78
LINC00643-204ENST00000555934 C1orf216Q8TAB5 229 aa10.18□□□□□ -0.78
LINC00643-204ENST00000555934 VTI1AQ96AJ9 217 aa10.18□□□□□ -0.78
LINC00643-204ENST00000555934 ZSCAN10Q96SZ4 725 aaPredicted RBP10.18□□□□□ -0.78
LINC00643-204ENST00000555934 FHDC1Q9C0D6 1143 aaPredicted RBP10.18□□□□□ -0.78
LINC00643-204ENST00000555934 PARP3Q9Y6F1 533 aa10.18□□□□□ -0.78
LINC00643-204ENST00000555934 SLC27A3Q5K4L6 730 aa10.17□□□□□ -0.78
LINC00643-204ENST00000555934 TMEM214Q6NUQ4 689 aaKnown RBP10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms