RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 LY75O60449 1722 aa16.49■□□□□ 0.23
SYNE2-214ENST00000554928 CABP4P57796 275 aa16.49■□□□□ 0.23
SYNE2-214ENST00000554928 NFATC2IPQ8NCF5 419 aa16.49■□□□□ 0.23
SYNE2-214ENST00000554928 IL17REQ8NFR9 667 aa16.49■□□□□ 0.23
SYNE2-214ENST00000554928 CCNL1Q9UK58 526 aaPredicted RBP16.49■□□□□ 0.23
SYNE2-214ENST00000554928 GAS2L2Q8NHY3 880 aa16.48■□□□□ 0.23
SYNE2-214ENST00000554928 SLC4A9Q96Q91 983 aa16.48■□□□□ 0.23
SYNE2-214ENST00000554928 MAP3K5Q99683 1374 aa16.48■□□□□ 0.23
SYNE2-214ENST00000554928 NBPF14Q5TI25 921 aa16.47■□□□□ 0.23
SYNE2-214ENST00000554928 ADAMTS7Q9UKP4 1686 aa16.46■□□□□ 0.23
SYNE2-214ENST00000554928 SLC15A2Q16348 729 aa16.46■□□□□ 0.23
SYNE2-214ENST00000554928 SLC27A3Q5K4L6 730 aa16.46■□□□□ 0.23
SYNE2-214ENST00000554928 AKT1S1Q96B36 256 aa16.46■□□□□ 0.23
SYNE2-214ENST00000554928 SLC52A2Q9HAB3 445 aa16.46■□□□□ 0.23
SYNE2-214ENST00000554928 MRC1P22897 1456 aa16.46■□□□□ 0.23
SYNE2-214ENST00000554928 SCN11AQ9UI33 1791 aa16.46■□□□□ 0.22
SYNE2-214ENST00000554928 GNAT3A8MTJ3 354 aa16.45■□□□□ 0.22
SYNE2-214ENST00000554928 ITPK1Q13572 414 aa16.45■□□□□ 0.22
SYNE2-214ENST00000554928 DCTN1Q14203 1278 aa16.45■□□□□ 0.22
SYNE2-214ENST00000554928 CCDC146Q8IYE0 955 aa16.45■□□□□ 0.22
SYNE2-214ENST00000554928 SMARCC1Q92922 1105 aaPredicted RBP16.45■□□□□ 0.22
SYNE2-214ENST00000554928 STK32BQ9NY57 414 aa16.45■□□□□ 0.22
SYNE2-214ENST00000554928 SRCAPQ6ZRS2 3230 aa16.45■□□□□ 0.22
SYNE2-214ENST00000554928 LOC102724428A0A0B4J2F2 783 aa16.44■□□□□ 0.22
SYNE2-214ENST00000554928 SIK1P57059 783 aa16.44■□□□□ 0.22
SYNE2-214ENST00000554928 SLC39A6Q13433 755 aa16.44■□□□□ 0.22
SYNE2-214ENST00000554928 SMIM5Q71RC9 77 aa16.44■□□□□ 0.22
SYNE2-214ENST00000554928 AMIGO3Q86WK7 504 aa16.44■□□□□ 0.22
SYNE2-214ENST00000554928 ADAMTS8Q9UP79 889 aa16.44■□□□□ 0.22
SYNE2-214ENST00000554928 MCM10Q7L590 875 aa16.43■□□□□ 0.22
SYNE2-214ENST00000554928 LINC00116Q8NCU8 138 aa16.43■□□□□ 0.22
SYNE2-214ENST00000554928 CEMIPQ8WUJ3 1361 aa16.42■□□□□ 0.22
SYNE2-214ENST00000554928 ANP32CO43423 234 aa16.42■□□□□ 0.22
SYNE2-214ENST00000554928 PTCD1O75127 700 aaKnown RBP16.42■□□□□ 0.22
SYNE2-214ENST00000554928 RBM42Q9BTD8 480 aaKnown RBP16.42■□□□□ 0.22
SYNE2-214ENST00000554928 KCNQ3O43525 872 aa16.4■□□□□ 0.22
SYNE2-214ENST00000554928 ATP6V1AP38606 617 aa16.4■□□□□ 0.22
SYNE2-214ENST00000554928 WDR43Q15061 677 aaKnown RBP eCLIP16.4■□□□□ 0.22
SYNE2-214ENST00000554928 NFE2L2Q16236 605 aa16.4■□□□□ 0.22
SYNE2-214ENST00000554928 THUMPD2Q9BTF0 503 aaKnown RBP16.4■□□□□ 0.22
SYNE2-214ENST00000554928 RRP7AQ9Y3A4 280 aaKnown RBP16.4■□□□□ 0.22
SYNE2-214ENST00000554928 CASZ1Q86V15 1759 aa16.4■□□□□ 0.22
SYNE2-214ENST00000554928 PNPLA7Q6ZV29 1317 aa16.4■□□□□ 0.22
SYNE2-214ENST00000554928 VIRMAQ69YN4 1812 aaKnown RBP16.4■□□□□ 0.22
SYNE2-214ENST00000554928 C5P01031 1676 aa16.39■□□□□ 0.21
SYNE2-214ENST00000554928 KCPQ6ZWJ8 1503 aa16.39■□□□□ 0.21
SYNE2-214ENST00000554928 TUBGCP6Q96RT7 1819 aa16.38■□□□□ 0.21
SYNE2-214ENST00000554928 ZBTB7AO95365 584 aa16.38■□□□□ 0.21
SYNE2-214ENST00000554928 MAPK8IP3Q9UPT6 1336 aa16.38■□□□□ 0.21
SYNE2-214ENST00000554928 TAF1LQ8IZX4 1826 aa16.38■□□□□ 0.21
SYNE2-214ENST00000554928 C4BP0C0L5 1744 aa16.37■□□□□ 0.21
SYNE2-214ENST00000554928 SENP3-EIF4A1A0A087X0R7 540 aa16.37■□□□□ 0.21
SYNE2-214ENST00000554928 TEFQ10587 303 aa16.37■□□□□ 0.21
SYNE2-214ENST00000554928 TFCP2L1Q9NZI6 479 aa16.37■□□□□ 0.21
SYNE2-214ENST00000554928 SIPA1L3O60292 1781 aaPredicted RBP16.36■□□□□ 0.21
SYNE2-214ENST00000554928 TMPOP42166 694 aaKnown RBP16.36■□□□□ 0.21
SYNE2-214ENST00000554928 COL23A1Q86Y22 540 aaPredicted RBP16.36■□□□□ 0.21
SYNE2-214ENST00000554928 RTF1Q92541 710 aaKnown RBP16.36■□□□□ 0.21
SYNE2-214ENST00000554928 MRS2Q9HD23 443 aa16.36■□□□□ 0.21
SYNE2-214ENST00000554928 DNAJC10Q8IXB1 793 aa16.35■□□□□ 0.21
SYNE2-214ENST00000554928 MIS18AQ9NYP9 233 aa16.35■□□□□ 0.21
SYNE2-214ENST00000554928 ATF5Q9Y2D1 282 aaPredicted RBP16.35■□□□□ 0.21
SYNE2-214ENST00000554928 DLG5Q8TDM6 1919 aa16.35■□□□□ 0.21
SYNE2-214ENST00000554928 TJP1Q07157 1748 aa16.34■□□□□ 0.21
SYNE2-214ENST00000554928 HTATSF1O43719 755 aaKnown RBP16.34■□□□□ 0.21
SYNE2-214ENST00000554928 NEFMP07197 916 aa16.34■□□□□ 0.21
SYNE2-214ENST00000554928 RIPK4P57078 832 aa16.34■□□□□ 0.21
SYNE2-214ENST00000554928 NEUROD2Q15784 382 aa16.34■□□□□ 0.21
SYNE2-214ENST00000554928 PNISRQ8TF01 805 aaKnown RBP16.34■□□□□ 0.21
SYNE2-214ENST00000554928 RUNDC1Q96C34 613 aa16.34■□□□□ 0.21
SYNE2-214ENST00000554928 ZNF496Q96IT1 587 aaPredicted RBP16.34■□□□□ 0.21
SYNE2-214ENST00000554928 PNNQ9H307 717 aaKnown RBP16.34■□□□□ 0.21
SYNE2-214ENST00000554928 U3KPZ7 1027 aaPredicted RBP16.34■□□□□ 0.21
SYNE2-214ENST00000554928 BTBD11A6QL63 1104 aa16.33■□□□□ 0.2
SYNE2-214ENST00000554928 PHF14O94880 888 aa16.33■□□□□ 0.2
SYNE2-214ENST00000554928 ZNF790Q6PG37 636 aa16.33■□□□□ 0.2
SYNE2-214ENST00000554928 AK7Q96M32 723 aa16.33■□□□□ 0.2
SYNE2-214ENST00000554928 GNPATO15228 680 aa16.32■□□□□ 0.2
SYNE2-214ENST00000554928 TRIM35Q9UPQ4 493 aa16.32■□□□□ 0.2
SYNE2-214ENST00000554928 UBR2Q8IWV8 1755 aa16.31■□□□□ 0.2
SYNE2-214ENST00000554928 COL5A3P25940 1745 aaPredicted RBP16.31■□□□□ 0.2
SYNE2-214ENST00000554928 ZNF831Q5JPB2 1677 aa16.31■□□□□ 0.2
SYNE2-214ENST00000554928 LRP5O75197 1615 aa16.31■□□□□ 0.2
SYNE2-214ENST00000554928 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.31■□□□□ 0.2
SYNE2-214ENST00000554928 PRAMEF22A3QJZ6 481 aa16.31■□□□□ 0.2
SYNE2-214ENST00000554928 APAF1O14727 1248 aa16.31■□□□□ 0.2
SYNE2-214ENST00000554928 PTGER2P43116 358 aa16.31■□□□□ 0.2
SYNE2-214ENST00000554928 CRKLP46109 303 aaKnown RBP16.31■□□□□ 0.2
SYNE2-214ENST00000554928 QSER1Q2KHR3 1735 aa16.31■□□□□ 0.2
SYNE2-214ENST00000554928 CNTNAP4Q9C0A0 1308 aa16.3■□□□□ 0.2
SYNE2-214ENST00000554928 MSL1Q68DK7 614 aa16.3■□□□□ 0.2
SYNE2-214ENST00000554928 INTS5Q6P9B9 1019 aaKnown RBP16.3■□□□□ 0.2
SYNE2-214ENST00000554928 TTC5Q8N0Z6 440 aa16.3■□□□□ 0.2
SYNE2-214ENST00000554928 SGIP1Q9BQI5 828 aa16.3■□□□□ 0.2
SYNE2-214ENST00000554928 UBR3Q6ZT12 1888 aa16.3■□□□□ 0.2
SYNE2-214ENST00000554928 MYH14Q7Z406 1995 aaKnown RBP16.29■□□□□ 0.2
SYNE2-214ENST00000554928 HEG1Q9ULI3 1381 aa16.29■□□□□ 0.2
SYNE2-214ENST00000554928 CYP19A1P11511 503 aaPredicted RBP16.29■□□□□ 0.2
SYNE2-214ENST00000554928 TAF7Q15545 349 aaPredicted RBP16.29■□□□□ 0.2
SYNE2-214ENST00000554928 MTFR1LQ9H019 292 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms