RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 TTC24A2A3L6 582 aaPredicted RBP8.66□□□□□ -1.02
VPS33B-203ENST00000554264 ZBBXA8MT70 800 aa8.66□□□□□ -1.02
VPS33B-203ENST00000554264 APBB1O00213 710 aa8.66□□□□□ -1.02
VPS33B-203ENST00000554264 ALDH1A1P00352 501 aa8.66□□□□□ -1.02
VPS33B-203ENST00000554264 GRM5P41594 1212 aa8.66□□□□□ -1.02
VPS33B-203ENST00000554264 MPNDQ8N594 471 aa8.66□□□□□ -1.02
VPS33B-203ENST00000554264 PNMA1Q8ND90 353 aa8.66□□□□□ -1.02
VPS33B-203ENST00000554264 CDK15Q96Q40 435 aa8.66□□□□□ -1.02
VPS33B-203ENST00000554264 CDC42BPBQ9Y5S2 1711 aa8.66□□□□□ -1.02
VPS33B-203ENST00000554264 MROH2AA6NES4 1674 aa8.65□□□□□ -1.02
VPS33B-203ENST00000554264 PREX2Q70Z35 1606 aa8.65□□□□□ -1.02
VPS33B-203ENST00000554264 CCDC18Q5T9S5 1454 aa8.65□□□□□ -1.02
VPS33B-203ENST00000554264 CLSPNQ9HAW4 1339 aa8.65□□□□□ -1.02
VPS33B-203ENST00000554264 LCE2BO14633 110 aa8.65□□□□□ -1.02
VPS33B-203ENST00000554264 ZBTB33Q86T24 672 aa8.65□□□□□ -1.02
VPS33B-203ENST00000554264 TRMT44Q8IYL2 757 aaKnown RBP8.65□□□□□ -1.02
VPS33B-203ENST00000554264 ITSN2Q9NZM3 1697 aa8.65□□□□□ -1.03
VPS33B-203ENST00000554264 KIDINS220Q9ULH0 1771 aa8.64□□□□□ -1.03
VPS33B-203ENST00000554264 NR1H3Q13133 447 aa8.64□□□□□ -1.03
VPS33B-203ENST00000554264 ARID5BQ14865 1188 aa8.64□□□□□ -1.03
VPS33B-203ENST00000554264 DIEXFQ68CQ4 756 aaKnown RBP8.64□□□□□ -1.03
VPS33B-203ENST00000554264 TCOF1Q13428 1488 aaKnown RBP8.64□□□□□ -1.03
VPS33B-203ENST00000554264 SPAG9O60271 1321 aaKnown RBP8.63□□□□□ -1.03
VPS33B-203ENST00000554264 VAC14Q08AM6 782 aa8.63□□□□□ -1.03
VPS33B-203ENST00000554264 HPS1Q92902 700 aa8.63□□□□□ -1.03
VPS33B-203ENST00000554264 SAMD9LQ8IVG5 1584 aa8.62□□□□□ -1.03
VPS33B-203ENST00000554264 FAM187AA6NFU0 413 aa8.62□□□□□ -1.03
VPS33B-203ENST00000554264 LAPTM4AQ15012 233 aa8.62□□□□□ -1.03
VPS33B-203ENST00000554264 ZNF142P52746 1687 aaPredicted RBP8.62□□□□□ -1.03
VPS33B-203ENST00000554264 CASKIN1Q8WXD9 1431 aa8.62□□□□□ -1.03
VPS33B-203ENST00000554264 CEP170BQ9Y4F5 1589 aaPredicted RBP8.61□□□□□ -1.03
VPS33B-203ENST00000554264 TOM1O60784 492 aa8.61□□□□□ -1.03
VPS33B-203ENST00000554264 NR3C2P08235 984 aa8.61□□□□□ -1.03
VPS33B-203ENST00000554264 FNBP4Q8N3X1 1017 aaPredicted RBP8.61□□□□□ -1.03
VPS33B-203ENST00000554264 PRM3Q9NNZ6 103 aa8.61□□□□□ -1.03
VPS33B-203ENST00000554264 ZNF777Q9ULD5 760 aaPredicted RBP8.61□□□□□ -1.03
VPS33B-203ENST00000554264 PTPRKQ15262 1439 aa8.61□□□□□ -1.03
VPS33B-203ENST00000554264 MYO3AQ8NEV4 1616 aa8.61□□□□□ -1.03
VPS33B-203ENST00000554264 PLEKHH2Q8IVE3 1493 aa8.6□□□□□ -1.03
VPS33B-203ENST00000554264 DGAT1O75907 488 aa8.6□□□□□ -1.03
VPS33B-203ENST00000554264 ADH1CP00326 375 aa8.6□□□□□ -1.03
VPS33B-203ENST00000554264 VASH1Q7L8A9 365 aaPredicted RBP8.6□□□□□ -1.03
VPS33B-203ENST00000554264 MAP4K5Q9Y4K4 846 aa8.6□□□□□ -1.03
VPS33B-203ENST00000554264 KIAA1107Q9UPP5 1409 aa8.6□□□□□ -1.03
VPS33B-203ENST00000554264 LRRIQ1Q96JM4 1722 aa8.6□□□□□ -1.03
VPS33B-203ENST00000554264 ATP7AQ04656 1500 aa8.59□□□□□ -1.03
VPS33B-203ENST00000554264 SYCP2Q9BX26 1530 aa8.59□□□□□ -1.03
VPS33B-203ENST00000554264 A2MP01023 1474 aa8.59□□□□□ -1.03
VPS33B-203ENST00000554264 HSPA1LP34931 641 aa8.59□□□□□ -1.03
VPS33B-203ENST00000554264 HNRNPMP52272 730 aaKnown RBP eCLIP8.59□□□□□ -1.03
VPS33B-203ENST00000554264 GGT6Q6P531 493 aa8.59□□□□□ -1.03
VPS33B-203ENST00000554264 DZIP3Q86Y13 1208 aaKnown RBP8.59□□□□□ -1.03
VPS33B-203ENST00000554264 SLC10A4Q96EP9 437 aa8.59□□□□□ -1.03
VPS33B-203ENST00000554264 KCTD15Q96SI1 283 aaPredicted RBP8.59□□□□□ -1.03
VPS33B-203ENST00000554264 KLF16Q9BXK1 252 aaPredicted RBP8.59□□□□□ -1.03
VPS33B-203ENST00000554264 PCDHB9Q9Y5E1 797 aa8.59□□□□□ -1.03
VPS33B-203ENST00000554264 VPS8Q8N3P4 1428 aa8.59□□□□□ -1.03
VPS33B-203ENST00000554264 PLXNC1O60486 1568 aa8.59□□□□□ -1.03
VPS33B-203ENST00000554264 CLTCQ00610 1675 aaKnown RBP8.59□□□□□ -1.03
VPS33B-203ENST00000554264 A2ML1A8K2U0 1454 aa8.58□□□□□ -1.04
VPS33B-203ENST00000554264 CDC42BPAQ5VT25 1732 aa8.58□□□□□ -1.04
VPS33B-203ENST00000554264 SUPT6HQ7KZ85 1726 aaKnown RBP8.58□□□□□ -1.04
VPS33B-203ENST00000554264 MED1Q15648 1581 aaPredicted RBP8.58□□□□□ -1.04
VPS33B-203ENST00000554264 POM121CA8CG34 1229 aa8.58□□□□□ -1.04
VPS33B-203ENST00000554264 RAD21O60216 631 aa8.58□□□□□ -1.04
VPS33B-203ENST00000554264 AVPP01185 164 aa8.58□□□□□ -1.04
VPS33B-203ENST00000554264 NNTQ13423 1086 aa8.58□□□□□ -1.04
VPS33B-203ENST00000554264 PKDCCQ504Y2 493 aa8.58□□□□□ -1.04
VPS33B-203ENST00000554264 WASF2Q9Y6W5 498 aa8.58□□□□□ -1.04
VPS33B-203ENST00000554264 CPS1P31327 1500 aa8.58□□□□□ -1.04
VPS33B-203ENST00000554264 FYCO1Q9BQS8 1478 aa8.57□□□□□ -1.04
VPS33B-203ENST00000554264 INO80Q9ULG1 1556 aaPredicted RBP8.57□□□□□ -1.04
VPS33B-203ENST00000554264 GIGYF1O75420 1035 aaPredicted RBP8.57□□□□□ -1.04
VPS33B-203ENST00000554264 FSHRP23945 695 aa8.57□□□□□ -1.04
VPS33B-203ENST00000554264 PIP4K2BP78356 416 aa8.57□□□□□ -1.04
VPS33B-203ENST00000554264 Q6ZNB5 142 aa8.57□□□□□ -1.04
VPS33B-203ENST00000554264 CFDP1Q9UEE9 299 aaPredicted RBP8.57□□□□□ -1.04
VPS33B-203ENST00000554264 GPATCH8Q9UKJ3 1502 aaKnown RBP8.57□□□□□ -1.04
VPS33B-203ENST00000554264 A6NJR5 290 aa8.56□□□□□ -1.04
VPS33B-203ENST00000554264 ESPNB1AK53 854 aa8.56□□□□□ -1.04
VPS33B-203ENST00000554264 NR5A1Q13285 461 aa8.56□□□□□ -1.04
VPS33B-203ENST00000554264 INTS6LQ5JSJ4 861 aaKnown RBP8.56□□□□□ -1.04
VPS33B-203ENST00000554264 CCNB3Q8WWL7 1395 aa8.56□□□□□ -1.04
VPS33B-203ENST00000554264 SHANK2Q9UPX8 1470 aa8.56□□□□□ -1.04
VPS33B-203ENST00000554264 DNMT1P26358 1616 aaKnown RBP8.55□□□□□ -1.04
VPS33B-203ENST00000554264 ST8SIA5O15466 376 aa8.55□□□□□ -1.04
VPS33B-203ENST00000554264 WASHC4Q2M389 1173 aa8.55□□□□□ -1.04
VPS33B-203ENST00000554264 ADAMTS19Q8TE59 1207 aa8.55□□□□□ -1.04
VPS33B-203ENST00000554264 DACH1Q9UI36 760 aa8.55□□□□□ -1.04
VPS33B-203ENST00000554264 ADGBQ8N7X0 1667 aa8.54□□□□□ -1.04
VPS33B-203ENST00000554264 TNRQ92752 1358 aa8.54□□□□□ -1.04
VPS33B-203ENST00000554264 PROSER2Q86WR7 435 aaPredicted RBP8.54□□□□□ -1.04
VPS33B-203ENST00000554264 ANKLE2Q86XL3 938 aa8.54□□□□□ -1.04
VPS33B-203ENST00000554264 AAASQ9NRG9 546 aa8.54□□□□□ -1.04
VPS33B-203ENST00000554264 CEP126Q9P2H0 1117 aa8.54□□□□□ -1.04
VPS33B-203ENST00000554264 CDV3Q9UKY7 258 aaKnown RBP8.54□□□□□ -1.04
VPS33B-203ENST00000554264 FAM135AQ9P2D6 1515 aa8.54□□□□□ -1.04
VPS33B-203ENST00000554264 RTEL1-TNFRSF6BF6WH68 1400 aa8.54□□□□□ -1.04
VPS33B-203ENST00000554264 DHX29Q7Z478 1369 aaKnown RBP8.53□□□□□ -1.04
VPS33B-203ENST00000554264 TIMP2P16035 220 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms