RNA–Protein interactions for RNA: ENST00000551845.5

PTCH1-225, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 809 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-225ENST00000551845 PHACTR3Q96KR7 559 aa14.11□□□□□ -0.15
PTCH1-225ENST00000551845 TMOD3Q9NYL9 352 aa14.11□□□□□ -0.15
PTCH1-225ENST00000551845 COL3A1P02461 1466 aaPredicted RBP14.11□□□□□ -0.15
PTCH1-225ENST00000551845 MAP3K5Q99683 1374 aa14.1□□□□□ -0.15
PTCH1-225ENST00000551845 RGPD2P0DJD1 1756 aa14.1□□□□□ -0.15
PTCH1-225ENST00000551845 HMGB2P26583 209 aaKnown RBP14.1□□□□□ -0.15
PTCH1-225ENST00000551845 PIGBQ92521 554 aa14.1□□□□□ -0.15
PTCH1-225ENST00000551845 SMARCC1Q92922 1105 aaPredicted RBP14.1□□□□□ -0.15
PTCH1-225ENST00000551845 GNAT3A8MTJ3 354 aa14.09□□□□□ -0.15
PTCH1-225ENST00000551845 POLD1P28340 1107 aa14.09□□□□□ -0.15
PTCH1-225ENST00000551845 WDR43Q15061 677 aaKnown RBP eCLIP14.09□□□□□ -0.15
PTCH1-225ENST00000551845 NHSQ6T4R5 1651 aa14.08□□□□□ -0.16
PTCH1-225ENST00000551845 RNMTO43148 476 aaKnown RBP14.08□□□□□ -0.16
PTCH1-225ENST00000551845 SLC27A3Q5K4L6 730 aa14.08□□□□□ -0.16
PTCH1-225ENST00000551845 NFATC2IPQ8NCF5 419 aa14.08□□□□□ -0.16
PTCH1-225ENST00000551845 LGR6Q9HBX8 967 aa14.08□□□□□ -0.16
PTCH1-225ENST00000551845 RTF1Q92541 710 aaKnown RBP14.07□□□□□ -0.16
PTCH1-225ENST00000551845 ZNF827Q17R98 1081 aa14.06□□□□□ -0.16
PTCH1-225ENST00000551845 PLEKHF1Q96S99 279 aa14.06□□□□□ -0.16
PTCH1-225ENST00000551845 ADAMTS8Q9UP79 889 aa14.06□□□□□ -0.16
PTCH1-225ENST00000551845 MAPK8IP3Q9UPT6 1336 aa14.06□□□□□ -0.16
PTCH1-225ENST00000551845 PAPPAQ13219 1627 aa14.05□□□□□ -0.16
PTCH1-225ENST00000551845 SHANK3Q9BYB0 1731 aa14.05□□□□□ -0.16
PTCH1-225ENST00000551845 HTATSF1O43719 755 aaKnown RBP14.05□□□□□ -0.16
PTCH1-225ENST00000551845 IL17REQ8NFR9 667 aa14.05□□□□□ -0.16
PTCH1-225ENST00000551845 CCNL1Q9UK58 526 aaPredicted RBP14.05□□□□□ -0.16
PTCH1-225ENST00000551845 ASAP1Q9ULH1 1129 aa14.05□□□□□ -0.16
PTCH1-225ENST00000551845 UTRNP46939 3433 aa14.05□□□□□ -0.16
PTCH1-225ENST00000551845 SLC16A10Q8TF71 515 aa14.04□□□□□ -0.16
PTCH1-225ENST00000551845 SLC52A2Q9HAB3 445 aa14.04□□□□□ -0.16
PTCH1-225ENST00000551845 ATG3Q9NT62 314 aa14.04□□□□□ -0.16
PTCH1-225ENST00000551845 BTAF1O14981 1849 aa14.04□□□□□ -0.16
PTCH1-225ENST00000551845 KAT6BQ8WYB5 2073 aa14.03□□□□□ -0.16
PTCH1-225ENST00000551845 TEFQ10587 303 aa14.03□□□□□ -0.16
PTCH1-225ENST00000551845 MRS2Q9HD23 443 aa14.03□□□□□ -0.16
PTCH1-225ENST00000551845 LRRC4BQ9NT99 713 aa14.03□□□□□ -0.16
PTCH1-225ENST00000551845 PALLDQ8WX93 1383 aa14.02□□□□□ -0.17
PTCH1-225ENST00000551845 GRIN3BO60391 1043 aa14.02□□□□□ -0.17
PTCH1-225ENST00000551845 KCNQ4P56696 695 aa14.02□□□□□ -0.17
PTCH1-225ENST00000551845 NFE2L2Q16236 605 aa14.02□□□□□ -0.17
PTCH1-225ENST00000551845 CCDC184Q52MB2 194 aa14.02□□□□□ -0.17
PTCH1-225ENST00000551845 NLGN2Q8NFZ4 835 aa14.02□□□□□ -0.17
PTCH1-225ENST00000551845 RUNDC1Q96C34 613 aa14.02□□□□□ -0.17
PTCH1-225ENST00000551845 LOC102724428A0A0B4J2F2 783 aa14.01□□□□□ -0.17
PTCH1-225ENST00000551845 ATP6V1AP38606 617 aa14.01□□□□□ -0.17
PTCH1-225ENST00000551845 SIK1P57059 783 aa14.01□□□□□ -0.17
PTCH1-225ENST00000551845 RIPK4P57078 832 aa14.01□□□□□ -0.17
PTCH1-225ENST00000551845 CCDC146Q8IYE0 955 aa14.01□□□□□ -0.17
PTCH1-225ENST00000551845 RBM42Q9BTD8 480 aaKnown RBP14.01□□□□□ -0.17
PTCH1-225ENST00000551845 KDM6AO15550 1401 aaPredicted RBP14□□□□□ -0.17
PTCH1-225ENST00000551845 NPM3O75607 178 aaKnown RBP14□□□□□ -0.17
PTCH1-225ENST00000551845 MCM10Q7L590 875 aa14□□□□□ -0.17
PTCH1-225ENST00000551845 PNISRQ8TF01 805 aaKnown RBP14□□□□□ -0.17
PTCH1-225ENST00000551845 AKT1S1Q96B36 256 aa14□□□□□ -0.17
PTCH1-225ENST00000551845 TFCP2L1Q9NZI6 479 aa14□□□□□ -0.17
PTCH1-225ENST00000551845 QSER1Q2KHR3 1735 aa13.99□□□□□ -0.17
PTCH1-225ENST00000551845 PKD1L3Q7Z443 1732 aa13.99□□□□□ -0.17
PTCH1-225ENST00000551845 PNPLA7Q6ZV29 1317 aa13.99□□□□□ -0.17
PTCH1-225ENST00000551845 PTCD1O75127 700 aaKnown RBP13.99□□□□□ -0.17
PTCH1-225ENST00000551845 YBX3P16989 372 aaKnown RBP eCLIP13.99□□□□□ -0.17
PTCH1-225ENST00000551845 TMPOP42166 694 aaKnown RBP13.99□□□□□ -0.17
PTCH1-225ENST00000551845 DCTN1Q14203 1278 aa13.99□□□□□ -0.17
PTCH1-225ENST00000551845 ATP10DQ9P241 1426 aa13.98□□□□□ -0.17
PTCH1-225ENST00000551845 BTBD11A6QL63 1104 aa13.98□□□□□ -0.17
PTCH1-225ENST00000551845 SLC39A6Q13433 755 aa13.98□□□□□ -0.17
PTCH1-225ENST00000551845 TAF7Q15545 349 aaPredicted RBP13.98□□□□□ -0.17
PTCH1-225ENST00000551845 NEUROD2Q15784 382 aa13.98□□□□□ -0.17
PTCH1-225ENST00000551845 TTC5Q8N0Z6 440 aa13.98□□□□□ -0.17
PTCH1-225ENST00000551845 GPBP1L1Q9HC44 474 aaPredicted RBP13.98□□□□□ -0.17
PTCH1-225ENST00000551845 LMOD3Q0VAK6 560 aa13.97□□□□□ -0.17
PTCH1-225ENST00000551845 DIEXFQ68CQ4 756 aaKnown RBP13.97□□□□□ -0.17
PTCH1-225ENST00000551845 COL24A1Q17RW2 1714 aa13.97□□□□□ -0.17
PTCH1-225ENST00000551845 HSPA6P17066 643 aa13.96□□□□□ -0.17
PTCH1-225ENST00000551845 ZNF790Q6PG37 636 aa13.96□□□□□ -0.17
PTCH1-225ENST00000551845 ZNF526Q8TF50 670 aaPredicted RBP13.96□□□□□ -0.17
PTCH1-225ENST00000551845 RRP7AQ9Y3A4 280 aaKnown RBP13.96□□□□□ -0.17
PTCH1-225ENST00000551845 CEMIPQ8WUJ3 1361 aa13.96□□□□□ -0.18
PTCH1-225ENST00000551845 TUBGCP6Q96RT7 1819 aa13.95□□□□□ -0.18
PTCH1-225ENST00000551845 APAF1O14727 1248 aa13.95□□□□□ -0.18
PTCH1-225ENST00000551845 RNF216Q9NWF9 866 aaPredicted RBP13.95□□□□□ -0.18
PTCH1-225ENST00000551845 ITPK1Q13572 414 aa13.94□□□□□ -0.18
PTCH1-225ENST00000551845 FAM9BQ8IZU0 186 aa13.94□□□□□ -0.18
PTCH1-225ENST00000551845 FLAD1Q8NFF5 587 aa13.94□□□□□ -0.18
PTCH1-225ENST00000551845 AK7Q96M32 723 aa13.94□□□□□ -0.18
PTCH1-225ENST00000551845 SLC4A9Q96Q91 983 aa13.94□□□□□ -0.18
PTCH1-225ENST00000551845 RC3H1Q5TC82 1133 aaKnown RBP13.93□□□□□ -0.18
PTCH1-225ENST00000551845 VSIG10Q8N0Z9 540 aa13.93□□□□□ -0.18
PTCH1-225ENST00000551845 LINC00116Q8NCU8 138 aa13.93□□□□□ -0.18
PTCH1-225ENST00000551845 TEX13AQ9BXU3 409 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-225ENST00000551845 CCER2I3L3R5 266 aa13.92□□□□□ -0.18
PTCH1-225ENST00000551845 ZNF496Q96IT1 587 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-225ENST00000551845 FMNL2Q96PY5 1086 aa13.92□□□□□ -0.18
PTCH1-225ENST00000551845 THUMPD2Q9BTF0 503 aaKnown RBP13.92□□□□□ -0.18
PTCH1-225ENST00000551845 MIS18AQ9NYP9 233 aa13.92□□□□□ -0.18
PTCH1-225ENST00000551845 DOT1LQ8TEK3 1739 aa13.92□□□□□ -0.18
PTCH1-225ENST00000551845 KCNQ3O43525 872 aa13.91□□□□□ -0.18
PTCH1-225ENST00000551845 MSL1Q68DK7 614 aa13.91□□□□□ -0.18
PTCH1-225ENST00000551845 DNAJC10Q8IXB1 793 aa13.91□□□□□ -0.18
PTCH1-225ENST00000551845 TRIM35Q9UPQ4 493 aa13.91□□□□□ -0.18
PTCH1-225ENST00000551845 STARD3NLO95772 234 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms