RNA–Protein interactions for RNA: ENST00000549347.1

RAPGEF3-220, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 4

Gene RAPGEF3, Length 573 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-220ENST00000549347 UBR2Q8IWV8 1755 aa23.42■■□□□ 1.34
RAPGEF3-220ENST00000549347 NFE2L2Q16236 605 aa23.42■■□□□ 1.34
RAPGEF3-220ENST00000549347 SLC27A3Q5K4L6 730 aa23.42■■□□□ 1.34
RAPGEF3-220ENST00000549347 HTATSF1O43719 755 aaKnown RBP23.41■■□□□ 1.34
RAPGEF3-220ENST00000549347 IL17REQ8NFR9 667 aa23.41■■□□□ 1.34
RAPGEF3-220ENST00000549347 NFATC2IPQ8NCF5 419 aa23.4■■□□□ 1.34
RAPGEF3-220ENST00000549347 PNISRQ8TF01 805 aaKnown RBP23.4■■□□□ 1.34
RAPGEF3-220ENST00000549347 RUNDC1Q96C34 613 aa23.4■■□□□ 1.34
RAPGEF3-220ENST00000549347 ATG3Q9NT62 314 aa23.4■■□□□ 1.34
RAPGEF3-220ENST00000549347 ASAP1Q9ULH1 1129 aa23.4■■□□□ 1.34
RAPGEF3-220ENST00000549347 CCDC146Q8IYE0 955 aa23.39■■□□□ 1.33
RAPGEF3-220ENST00000549347 RTF1Q92541 710 aaKnown RBP23.38■■□□□ 1.33
RAPGEF3-220ENST00000549347 LRRC4BQ9NT99 713 aa23.38■■□□□ 1.33
RAPGEF3-220ENST00000549347 QSER1Q2KHR3 1735 aa23.38■■□□□ 1.33
RAPGEF3-220ENST00000549347 COL5A3P25940 1745 aaPredicted RBP23.37■■□□□ 1.33
RAPGEF3-220ENST00000549347 DIEXFQ68CQ4 756 aaKnown RBP23.37■■□□□ 1.33
RAPGEF3-220ENST00000549347 CCNL1Q9UK58 526 aaPredicted RBP23.37■■□□□ 1.33
RAPGEF3-220ENST00000549347 KCPQ6ZWJ8 1503 aa23.37■■□□□ 1.33
RAPGEF3-220ENST00000549347 TJP1Q07157 1748 aa23.36■■□□□ 1.33
RAPGEF3-220ENST00000549347 TUBGCP6Q96RT7 1819 aa23.36■■□□□ 1.33
RAPGEF3-220ENST00000549347 TMPOP42166 694 aaKnown RBP23.36■■□□□ 1.33
RAPGEF3-220ENST00000549347 TEFQ10587 303 aa23.35■■□□□ 1.33
RAPGEF3-220ENST00000549347 MCM10Q7L590 875 aa23.35■■□□□ 1.33
RAPGEF3-220ENST00000549347 ANO8Q9HCE9 1232 aaPredicted RBP23.35■■□□□ 1.33
RAPGEF3-220ENST00000549347 C4BP0C0L5 1744 aa23.35■■□□□ 1.33
RAPGEF3-220ENST00000549347 LOC102724428A0A0B4J2F2 783 aa23.34■■□□□ 1.33
RAPGEF3-220ENST00000549347 SIK1P57059 783 aa23.34■■□□□ 1.33
RAPGEF3-220ENST00000549347 KDM3BQ7LBC6 1761 aa23.34■■□□□ 1.33
RAPGEF3-220ENST00000549347 DCTN1Q14203 1278 aa23.33■■□□□ 1.33
RAPGEF3-220ENST00000549347 NBPF14Q5TI25 921 aa23.33■■□□□ 1.33
RAPGEF3-220ENST00000549347 LMOD3Q0VAK6 560 aa23.32■■□□□ 1.32
RAPGEF3-220ENST00000549347 CASZ1Q86V15 1759 aa23.32■■□□□ 1.32
RAPGEF3-220ENST00000549347 CCER2I3L3R5 266 aa23.31■■□□□ 1.32
RAPGEF3-220ENST00000549347 KCNQ4P56696 695 aa23.31■■□□□ 1.32
RAPGEF3-220ENST00000549347 RIPK4P57078 832 aa23.31■■□□□ 1.32
RAPGEF3-220ENST00000549347 HMGB2P26583 209 aaKnown RBP23.3■■□□□ 1.32
RAPGEF3-220ENST00000549347 RRP7AQ9Y3A4 280 aaKnown RBP23.29■■□□□ 1.32
RAPGEF3-220ENST00000549347 UBR3Q6ZT12 1888 aa23.28■■□□□ 1.32
RAPGEF3-220ENST00000549347 SLC39A6Q13433 755 aa23.28■■□□□ 1.32
RAPGEF3-220ENST00000549347 R3HDM1Q15032 1099 aaKnown RBP23.28■■□□□ 1.32
RAPGEF3-220ENST00000549347 ZNF827Q17R98 1081 aa23.28■■□□□ 1.32
RAPGEF3-220ENST00000549347 AKT1S1Q96B36 256 aa23.28■■□□□ 1.32
RAPGEF3-220ENST00000549347 SLC4A9Q96Q91 983 aa23.28■■□□□ 1.32
RAPGEF3-220ENST00000549347 STK32BQ9NY57 414 aa23.28■■□□□ 1.32
RAPGEF3-220ENST00000549347 APAF1O14727 1248 aa23.27■■□□□ 1.32
RAPGEF3-220ENST00000549347 ITPK1Q13572 414 aa23.27■■□□□ 1.32
RAPGEF3-220ENST00000549347 SLC15A2Q16348 729 aa23.27■■□□□ 1.32
RAPGEF3-220ENST00000549347 RBM42Q9BTD8 480 aaKnown RBP23.27■■□□□ 1.32
RAPGEF3-220ENST00000549347 BTBD11A6QL63 1104 aa23.26■■□□□ 1.31
RAPGEF3-220ENST00000549347 PTCD1O75127 700 aaKnown RBP23.26■■□□□ 1.31
RAPGEF3-220ENST00000549347 ATP6V1AP38606 617 aa23.26■■□□□ 1.31
RAPGEF3-220ENST00000549347 ZNF790Q6PG37 636 aa23.26■■□□□ 1.31
RAPGEF3-220ENST00000549347 THUMPD2Q9BTF0 503 aaKnown RBP23.26■■□□□ 1.31
RAPGEF3-220ENST00000549347 TRIM35Q9UPQ4 493 aa23.26■■□□□ 1.31
RAPGEF3-220ENST00000549347 PSDA5PKW4 1024 aaPredicted RBP23.25■■□□□ 1.31
RAPGEF3-220ENST00000549347 NEUROD2Q15784 382 aa23.25■■□□□ 1.31
RAPGEF3-220ENST00000549347 TTC5Q8N0Z6 440 aa23.25■■□□□ 1.31
RAPGEF3-220ENST00000549347 TAF7Q15545 349 aaPredicted RBP23.24■■□□□ 1.31
RAPGEF3-220ENST00000549347 LINC00116Q8NCU8 138 aa23.24■■□□□ 1.31
RAPGEF3-220ENST00000549347 LAMB4A4D0S4 1761 aa23.23■■□□□ 1.31
RAPGEF3-220ENST00000549347 MYH14Q7Z406 1995 aaKnown RBP23.22■■□□□ 1.31
RAPGEF3-220ENST00000549347 FAM9BQ8IZU0 186 aa23.22■■□□□ 1.31
RAPGEF3-220ENST00000549347 VSIG10Q8N0Z9 540 aa23.22■■□□□ 1.31
RAPGEF3-220ENST00000549347 HEG1Q9ULI3 1381 aa23.22■■□□□ 1.31
RAPGEF3-220ENST00000549347 MIER1Q8N108 512 aa23.21■■□□□ 1.31
RAPGEF3-220ENST00000549347 ZNF496Q96IT1 587 aaPredicted RBP23.21■■□□□ 1.31
RAPGEF3-220ENST00000549347 CNTNAP4Q9C0A0 1308 aa23.21■■□□□ 1.31
RAPGEF3-220ENST00000549347 KCNQ3O43525 872 aa23.2■■□□□ 1.3
RAPGEF3-220ENST00000549347 NCBP3Q53F19 620 aaKnown RBP23.2■■□□□ 1.3
RAPGEF3-220ENST00000549347 LRP5O75197 1615 aa23.19■■□□□ 1.3
RAPGEF3-220ENST00000549347 FMNL2Q96PY5 1086 aa23.19■■□□□ 1.3
RAPGEF3-220ENST00000549347 BABAM1Q9NWV8 329 aa23.19■■□□□ 1.3
RAPGEF3-220ENST00000549347 PNPLA7Q6ZV29 1317 aa23.18■■□□□ 1.3
RAPGEF3-220ENST00000549347 CCDC27Q2M243 656 aa23.18■■□□□ 1.3
RAPGEF3-220ENST00000549347 AK7Q96M32 723 aa23.18■■□□□ 1.3
RAPGEF3-220ENST00000549347 TFCP2L1Q9NZI6 479 aa23.18■■□□□ 1.3
RAPGEF3-220ENST00000549347 C4AP0C0L4 1744 aa23.17■■□□□ 1.3
RAPGEF3-220ENST00000549347 COL24A1Q17RW2 1714 aa23.17■■□□□ 1.3
RAPGEF3-220ENST00000549347 RC3H1Q5TC82 1133 aaKnown RBP23.17■■□□□ 1.3
RAPGEF3-220ENST00000549347 DNAJC10Q8IXB1 793 aa23.17■■□□□ 1.3
RAPGEF3-220ENST00000549347 MIS18AQ9NYP9 233 aa23.16■■□□□ 1.3
RAPGEF3-220ENST00000549347 CYP19A1P11511 503 aaPredicted RBP23.14■■□□□ 1.29
RAPGEF3-220ENST00000549347 CRKLP46109 303 aaKnown RBP23.14■■□□□ 1.29
RAPGEF3-220ENST00000549347 PDGFDQ9GZP0 370 aaPredicted RBP23.14■■□□□ 1.29
RAPGEF3-220ENST00000549347 TSPYL4Q9UJ04 414 aa23.14■■□□□ 1.29
RAPGEF3-220ENST00000549347 GNPATO15228 680 aa23.13■■□□□ 1.29
RAPGEF3-220ENST00000549347 SSFA2P28290 1259 aa23.13■■□□□ 1.29
RAPGEF3-220ENST00000549347 CALD1Q05682 793 aaKnown RBP23.13■■□□□ 1.29
RAPGEF3-220ENST00000549347 AMIGO3Q86WK7 504 aa23.13■■□□□ 1.29
RAPGEF3-220ENST00000549347 TEX13AQ9BXU3 409 aaPredicted RBP23.13■■□□□ 1.29
RAPGEF3-220ENST00000549347 CHL1O00533 1208 aa23.12■■□□□ 1.29
RAPGEF3-220ENST00000549347 EIF4A1P60842 406 aaKnown RBP23.12■■□□□ 1.29
RAPGEF3-220ENST00000549347 NGEFQ8N5V2 710 aa23.12■■□□□ 1.29
RAPGEF3-220ENST00000549347 FLAD1Q8NFF5 587 aa23.12■■□□□ 1.29
RAPGEF3-220ENST00000549347 SNRPA1P09661 255 aaKnown RBP23.11■■□□□ 1.29
RAPGEF3-220ENST00000549347 INTS5Q6P9B9 1019 aaKnown RBP23.11■■□□□ 1.29
RAPGEF3-220ENST00000549347 WWC1Q8IX03 1113 aa23.11■■□□□ 1.29
RAPGEF3-220ENST00000549347 CFAP44Q96MT7 982 aa23.11■■□□□ 1.29
RAPGEF3-220ENST00000549347 CCDC87Q9NVE4 849 aa23.11■■□□□ 1.29
RAPGEF3-220ENST00000549347 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms