RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 KIF18AQ8NI77 898 aa17.24■□□□□ 0.35
RAPGEF3-216ENST00000547856 IFT57Q9NWB7 429 aa17.24■□□□□ 0.35
RAPGEF3-216ENST00000547856 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.24■□□□□ 0.35
RAPGEF3-216ENST00000547856 ZFP91Q96JP5 570 aaPredicted RBP17.24■□□□□ 0.35
RAPGEF3-216ENST00000547856 CNPY2Q9Y2B0 182 aa17.24■□□□□ 0.35
RAPGEF3-216ENST00000547856 PTPRMP28827 1452 aa17.23■□□□□ 0.35
RAPGEF3-216ENST00000547856 MORC2Q9Y6X9 1032 aaPredicted RBP17.23■□□□□ 0.35
RAPGEF3-216ENST00000547856 LRMPQ12912 555 aa17.23■□□□□ 0.35
RAPGEF3-216ENST00000547856 ABCC11Q96J66 1382 aa17.22■□□□□ 0.35
RAPGEF3-216ENST00000547856 KRT222Q8N1A0 295 aa17.22■□□□□ 0.35
RAPGEF3-216ENST00000547856 PRAM1Q96QH2 718 aa17.22■□□□□ 0.35
RAPGEF3-216ENST00000547856 TNNT1P13805 278 aa17.21■□□□□ 0.35
RAPGEF3-216ENST00000547856 MX1P20591 662 aa17.21■□□□□ 0.35
RAPGEF3-216ENST00000547856 SRPK2P78362 688 aaKnown RBP17.21■□□□□ 0.35
RAPGEF3-216ENST00000547856 A0A1W2PP64 1363 aa17.21■□□□□ 0.35
RAPGEF3-216ENST00000547856 MINK1Q8N4C8 1332 aaPredicted RBP17.21■□□□□ 0.35
RAPGEF3-216ENST00000547856 DTNBO60941 627 aa17.21■□□□□ 0.35
RAPGEF3-216ENST00000547856 REC8O95072 547 aa17.21■□□□□ 0.35
RAPGEF3-216ENST00000547856 YTHDC2Q9H6S0 1430 aaKnown RBP17.2■□□□□ 0.34
RAPGEF3-216ENST00000547856 CCDC112Q8NEF3 446 aa17.2■□□□□ 0.34
RAPGEF3-216ENST00000547856 NPHP1O15259 732 aa17.2■□□□□ 0.34
RAPGEF3-216ENST00000547856 DRC7Q8IY82 874 aa17.2■□□□□ 0.34
RAPGEF3-216ENST00000547856 PLEKHF1Q96S99 279 aa17.2■□□□□ 0.34
RAPGEF3-216ENST00000547856 UPF3BQ9BZI7 483 aaKnown RBP17.19■□□□□ 0.34
RAPGEF3-216ENST00000547856 ALKQ9UM73 1620 aa17.19■□□□□ 0.34
RAPGEF3-216ENST00000547856 CLTCQ00610 1675 aaKnown RBP17.19■□□□□ 0.34
RAPGEF3-216ENST00000547856 SMTNL1A8MU46 457 aa17.19■□□□□ 0.34
RAPGEF3-216ENST00000547856 GOLGA6L6A8MZA4 724 aa17.19■□□□□ 0.34
RAPGEF3-216ENST00000547856 FIBPO43427 364 aa17.19■□□□□ 0.34
RAPGEF3-216ENST00000547856 IRX3P78415 501 aaPredicted RBP17.19■□□□□ 0.34
RAPGEF3-216ENST00000547856 ALDH1L2Q3SY69 923 aa17.19■□□□□ 0.34
RAPGEF3-216ENST00000547856 CCDC186Q7Z3E2 898 aa17.19■□□□□ 0.34
RAPGEF3-216ENST00000547856 TSPYL6Q8N831 410 aa17.19■□□□□ 0.34
RAPGEF3-216ENST00000547856 CALCOCO1Q9P1Z2 691 aa17.19■□□□□ 0.34
RAPGEF3-216ENST00000547856 NSD2O96028 1365 aa17.18■□□□□ 0.34
RAPGEF3-216ENST00000547856 ERC2O15083 957 aa17.18■□□□□ 0.34
RAPGEF3-216ENST00000547856 KMT5BQ4FZB7 885 aa17.18■□□□□ 0.34
RAPGEF3-216ENST00000547856 RTF1Q92541 710 aaKnown RBP17.18■□□□□ 0.34
RAPGEF3-216ENST00000547856 THUMPD2Q9BTF0 503 aaKnown RBP17.18■□□□□ 0.34
RAPGEF3-216ENST00000547856 SRCIN1Q9C0H9 1055 aa17.18■□□□□ 0.34
RAPGEF3-216ENST00000547856 NRBP1Q9UHY1 535 aa17.18■□□□□ 0.34
RAPGEF3-216ENST00000547856 PALD1Q9ULE6 856 aa17.18■□□□□ 0.34
RAPGEF3-216ENST00000547856 CFAP44Q96MT7 982 aa17.17■□□□□ 0.34
RAPGEF3-216ENST00000547856 STAG3Q9UJ98 1225 aa17.17■□□□□ 0.34
RAPGEF3-216ENST00000547856 CHMP3Q9Y3E7 222 aa17.17■□□□□ 0.34
RAPGEF3-216ENST00000547856 TPD52L1Q16890 204 aaPredicted RBP17.16■□□□□ 0.34
RAPGEF3-216ENST00000547856 MRPL50Q8N5N7 158 aaKnown RBP17.16■□□□□ 0.34
RAPGEF3-216ENST00000547856 GGNBP2Q9H3C7 697 aa17.16■□□□□ 0.34
RAPGEF3-216ENST00000547856 REREQ9P2R6 1566 aa17.16■□□□□ 0.34
RAPGEF3-216ENST00000547856 CD163L1Q9NR16 1453 aa17.16■□□□□ 0.34
RAPGEF3-216ENST00000547856 AGLP35573 1532 aa17.16■□□□□ 0.34
RAPGEF3-216ENST00000547856 TPM3P06753 285 aa17.15■□□□□ 0.34
RAPGEF3-216ENST00000547856 MLECQ14165 292 aa17.15■□□□□ 0.34
RAPGEF3-216ENST00000547856 TSHZ3Q63HK5 1081 aa17.15■□□□□ 0.34
RAPGEF3-216ENST00000547856 LARP6Q9BRS8 491 aaKnown RBP17.15■□□□□ 0.34
RAPGEF3-216ENST00000547856 TULP2O00295 520 aa17.15■□□□□ 0.34
RAPGEF3-216ENST00000547856 DCTPP1Q9H773 170 aa17.15■□□□□ 0.34
RAPGEF3-216ENST00000547856 HNRNPH2P55795 449 aaKnown RBP17.14■□□□□ 0.34
RAPGEF3-216ENST00000547856 CUL4AQ13619 759 aa17.14■□□□□ 0.34
RAPGEF3-216ENST00000547856 SLC20A2Q08357 652 aa17.14■□□□□ 0.33
RAPGEF3-216ENST00000547856 WDR33Q9C0J8 1336 aaKnown RBP17.14■□□□□ 0.33
RAPGEF3-216ENST00000547856 FYB1O15117 783 aa17.14■□□□□ 0.33
RAPGEF3-216ENST00000547856 CHMP4CQ96CF2 233 aa17.14■□□□□ 0.33
RAPGEF3-216ENST00000547856 A2ML1A8K2U0 1454 aa17.13■□□□□ 0.33
RAPGEF3-216ENST00000547856 SYCP1Q15431 976 aa17.13■□□□□ 0.33
RAPGEF3-216ENST00000547856 ZNF215Q9UL58 517 aaPredicted RBP17.13■□□□□ 0.33
RAPGEF3-216ENST00000547856 VAMP4O75379 141 aa17.13■□□□□ 0.33
RAPGEF3-216ENST00000547856 LUZP1Q86V48 1076 aa17.13■□□□□ 0.33
RAPGEF3-216ENST00000547856 CDK19Q9BWU1 502 aa17.13■□□□□ 0.33
RAPGEF3-216ENST00000547856 MED14O60244 1454 aa17.12■□□□□ 0.33
RAPGEF3-216ENST00000547856 RBM6P78332 1123 aaKnown RBP17.12■□□□□ 0.33
RAPGEF3-216ENST00000547856 ELF2Q15723 593 aa17.12■□□□□ 0.33
RAPGEF3-216ENST00000547856 FBXO38Q6PIJ6 1188 aa17.12■□□□□ 0.33
RAPGEF3-216ENST00000547856 ZNF397Q8NF99 534 aaPredicted RBP17.12■□□□□ 0.33
RAPGEF3-216ENST00000547856 GTF3C6Q969F1 213 aa17.12■□□□□ 0.33
RAPGEF3-216ENST00000547856 FUCA2Q9BTY2 467 aa17.12■□□□□ 0.33
RAPGEF3-216ENST00000547856 TNNT3P45378 269 aaPredicted RBP17.12■□□□□ 0.33
RAPGEF3-216ENST00000547856 UBE2HP62256 183 aa17.12■□□□□ 0.33
RAPGEF3-216ENST00000547856 ANO2Q9NQ90 1003 aa17.12■□□□□ 0.33
RAPGEF3-216ENST00000547856 PPP6R1Q9UPN7 881 aa17.12■□□□□ 0.33
RAPGEF3-216ENST00000547856 ARHGEF40Q8TER5 1519 aa17.12■□□□□ 0.33
RAPGEF3-216ENST00000547856 SPATA31D1Q6ZQQ2 1576 aa17.11■□□□□ 0.33
RAPGEF3-216ENST00000547856 IL16Q14005 1332 aa17.11■□□□□ 0.33
RAPGEF3-216ENST00000547856 CAMK4Q16566 473 aa17.11■□□□□ 0.33
RAPGEF3-216ENST00000547856 CEP135Q66GS9 1140 aa17.11■□□□□ 0.33
RAPGEF3-216ENST00000547856 TERF2IPQ9NYB0 399 aa17.11■□□□□ 0.33
RAPGEF3-216ENST00000547856 FEZ2Q9UHY8 353 aaPredicted RBP17.11■□□□□ 0.33
RAPGEF3-216ENST00000547856 MCM2P49736 904 aa17.11■□□□□ 0.33
RAPGEF3-216ENST00000547856 NCBP3Q53F19 620 aaKnown RBP17.11■□□□□ 0.33
RAPGEF3-216ENST00000547856 WAPLQ7Z5K2 1190 aa17.11■□□□□ 0.33
RAPGEF3-216ENST00000547856 NOL10Q9BSC4 688 aaKnown RBP17.11■□□□□ 0.33
RAPGEF3-216ENST00000547856 PAXBP1Q9Y5B6 917 aa17.11■□□□□ 0.33
RAPGEF3-216ENST00000547856 ANKRD26Q9UPS8 1709 aa17.1■□□□□ 0.33
RAPGEF3-216ENST00000547856 TMX1Q9H3N1 280 aa17.1■□□□□ 0.33
RAPGEF3-216ENST00000547856 CABP1Q9NZU7 370 aa17.1■□□□□ 0.33
RAPGEF3-216ENST00000547856 INTS4Q96HW7 963 aaKnown RBP17.1■□□□□ 0.33
RAPGEF3-216ENST00000547856 SETD1AO15047 1707 aaKnown RBP17.09■□□□□ 0.33
RAPGEF3-216ENST00000547856 RIMS2Q9UQ26 1411 aa17.09■□□□□ 0.33
RAPGEF3-216ENST00000547856 ZSCAN25Q6NSZ9 544 aa17.09■□□□□ 0.33
RAPGEF3-216ENST00000547856 TRIM5Q9C035 493 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms