RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 PRPF40AO75400 957 aaKnown RBP19.37■□□□□ 0.69
LDLR-204ENST00000545707 NLRP6P59044 892 aa19.37■□□□□ 0.69
LDLR-204ENST00000545707 RILPL2Q969X0 211 aa19.37■□□□□ 0.69
LDLR-204ENST00000545707 FLT4P35916 1363 aa19.37■□□□□ 0.69
LDLR-204ENST00000545707 CEP170BQ9Y4F5 1589 aaPredicted RBP19.37■□□□□ 0.69
LDLR-204ENST00000545707 OSBPL3Q9H4L5 887 aa19.37■□□□□ 0.69
LDLR-204ENST00000545707 RGPD1P0DJD0 1748 aa19.36■□□□□ 0.69
LDLR-204ENST00000545707 NASPP49321 788 aaPredicted RBP19.36■□□□□ 0.69
LDLR-204ENST00000545707 LRRCC1Q9C099 1032 aa19.36■□□□□ 0.69
LDLR-204ENST00000545707 PALD1Q9ULE6 856 aa19.36■□□□□ 0.69
LDLR-204ENST00000545707 SBNO1A3KN83 1393 aa19.36■□□□□ 0.69
LDLR-204ENST00000545707 TRIM6-TRIM34B2RNG4 842 aa19.36■□□□□ 0.69
LDLR-204ENST00000545707 RBM27Q9P2N5 1060 aaKnown RBP19.36■□□□□ 0.69
LDLR-204ENST00000545707 IGSF1Q8N6C5 1336 aa19.36■□□□□ 0.69
LDLR-204ENST00000545707 LRRFIP2Q9Y608 721 aaKnown RBP19.35■□□□□ 0.69
LDLR-204ENST00000545707 UNC5CLQ8IV45 518 aa19.35■□□□□ 0.69
LDLR-204ENST00000545707 IL17REQ8NFR9 667 aa19.35■□□□□ 0.69
LDLR-204ENST00000545707 PLEKHG1Q9ULL1 1385 aa19.35■□□□□ 0.69
LDLR-204ENST00000545707 MX1P20591 662 aa19.34■□□□□ 0.69
LDLR-204ENST00000545707 USHBP1Q8N6Y0 703 aa19.34■□□□□ 0.69
LDLR-204ENST00000545707 CWC22Q9HCG8 908 aaKnown RBP19.34■□□□□ 0.69
LDLR-204ENST00000545707 UBR1Q8IWV7 1749 aa19.34■□□□□ 0.69
LDLR-204ENST00000545707 KDRP35968 1356 aa19.34■□□□□ 0.69
LDLR-204ENST00000545707 ZSCAN23Q3MJ62 389 aa19.34■□□□□ 0.69
LDLR-204ENST00000545707 CCDC30Q5VVM6 783 aa19.34■□□□□ 0.69
LDLR-204ENST00000545707 ESYT1Q9BSJ8 1104 aa19.34■□□□□ 0.69
LDLR-204ENST00000545707 IL1RAPL2Q9NP60 686 aa19.34■□□□□ 0.69
LDLR-204ENST00000545707 TTC21AQ8NDW8 1320 aa19.34■□□□□ 0.69
LDLR-204ENST00000545707 SALL3Q9BXA9 1300 aa19.34■□□□□ 0.69
LDLR-204ENST00000545707 GNAT3A8MTJ3 354 aa19.33■□□□□ 0.69
LDLR-204ENST00000545707 TMX3Q96JJ7 454 aa19.33■□□□□ 0.69
LDLR-204ENST00000545707 ANO2Q9NQ90 1003 aa19.33■□□□□ 0.69
LDLR-204ENST00000545707 ATP8B2P98198 1209 aa19.33■□□□□ 0.68
LDLR-204ENST00000545707 GPT2Q8TD30 523 aa19.33■□□□□ 0.68
LDLR-204ENST00000545707 EID1Q9Y6B2 187 aa19.33■□□□□ 0.68
LDLR-204ENST00000545707 TOPAZ1Q8N9V7 1692 aa19.33■□□□□ 0.68
LDLR-204ENST00000545707 PHAXQ9H814 394 aaKnown RBP19.32■□□□□ 0.68
LDLR-204ENST00000545707 GNAI3P08754 354 aa19.32■□□□□ 0.68
LDLR-204ENST00000545707 NSFL1CQ9UNZ2 370 aaKnown RBP19.32■□□□□ 0.68
LDLR-204ENST00000545707 MAP4K4O95819 1239 aaPredicted RBP19.31■□□□□ 0.68
LDLR-204ENST00000545707 PRKCSHP14314 528 aaPredicted RBP19.31■□□□□ 0.68
LDLR-204ENST00000545707 IL25Q9H293 177 aa19.31■□□□□ 0.68
LDLR-204ENST00000545707 NALCNQ8IZF0 1738 aa19.31■□□□□ 0.68
LDLR-204ENST00000545707 CHMLP26374 656 aa19.31■□□□□ 0.68
LDLR-204ENST00000545707 HOXC9P31274 260 aa19.31■□□□□ 0.68
LDLR-204ENST00000545707 USP44Q9H0E7 712 aa19.31■□□□□ 0.68
LDLR-204ENST00000545707 C14orf37Q86TY3 774 aa19.3■□□□□ 0.68
LDLR-204ENST00000545707 NUTM1Q86Y26 1132 aa19.3■□□□□ 0.68
LDLR-204ENST00000545707 UPF3BQ9BZI7 483 aaKnown RBP19.3■□□□□ 0.68
LDLR-204ENST00000545707 FOXD4L6Q3SYB3 417 aaPredicted RBP19.3■□□□□ 0.68
LDLR-204ENST00000545707 FOXD4L3Q6VB84 417 aaPredicted RBP19.3■□□□□ 0.68
LDLR-204ENST00000545707 RBSNQ9H1K0 784 aa19.3■□□□□ 0.68
LDLR-204ENST00000545707 PRIM1P49642 420 aaKnown RBP19.29■□□□□ 0.68
LDLR-204ENST00000545707 ZNF445P59923 1031 aa19.29■□□□□ 0.68
LDLR-204ENST00000545707 CCDC173Q0VFZ6 552 aa19.29■□□□□ 0.68
LDLR-204ENST00000545707 IBTKQ9P2D0 1353 aaPredicted RBP19.28■□□□□ 0.68
LDLR-204ENST00000545707 EIF2S2P20042 333 aaKnown RBP19.28■□□□□ 0.68
LDLR-204ENST00000545707 TAF7Q15545 349 aaPredicted RBP19.27■□□□□ 0.68
LDLR-204ENST00000545707 ABTB2Q8N961 1025 aa19.27■□□□□ 0.68
LDLR-204ENST00000545707 UBTFL1P0CB47 393 aaPredicted RBP19.27■□□□□ 0.68
LDLR-204ENST00000545707 PPP1R9BQ96SB3 815 aa19.27■□□□□ 0.68
LDLR-204ENST00000545707 HDGFL1Q5TGJ6 251 aa19.26■□□□□ 0.67
LDLR-204ENST00000545707 TMEM63CQ9P1W3 806 aa19.26■□□□□ 0.67
LDLR-204ENST00000545707 ANP32BQ92688 251 aaKnown RBP19.26■□□□□ 0.67
LDLR-204ENST00000545707 HTATSF1O43719 755 aaKnown RBP19.25■□□□□ 0.67
LDLR-204ENST00000545707 SURF6O75683 361 aaKnown RBP19.25■□□□□ 0.67
LDLR-204ENST00000545707 PLEKHG5O94827 1062 aa19.25■□□□□ 0.67
LDLR-204ENST00000545707 RBM33Q96EV2 1170 aaKnown RBP19.25■□□□□ 0.67
LDLR-204ENST00000545707 TBX22Q9Y458 520 aa19.25■□□□□ 0.67
LDLR-204ENST00000545707 RGPD8O14715 1765 aaPredicted RBP19.25■□□□□ 0.67
LDLR-204ENST00000545707 ZBTB7CA1YPR0 619 aa19.24■□□□□ 0.67
LDLR-204ENST00000545707 ANXA1P04083 346 aa19.24■□□□□ 0.67
LDLR-204ENST00000545707 PPP1R42Q7Z4L9 355 aa19.24■□□□□ 0.67
LDLR-204ENST00000545707 STAP2Q9UGK3 403 aa19.24■□□□□ 0.67
LDLR-204ENST00000545707 MAP3K5Q99683 1374 aa19.24■□□□□ 0.67
LDLR-204ENST00000545707 SYCE3A1L190 88 aa19.24■□□□□ 0.67
LDLR-204ENST00000545707 MCCP23508 829 aa19.24■□□□□ 0.67
LDLR-204ENST00000545707 KCNA6P17658 529 aa19.23■□□□□ 0.67
LDLR-204ENST00000545707 LGR6Q9HBX8 967 aa19.23■□□□□ 0.67
LDLR-204ENST00000545707 FMN2Q9NZ56 1722 aa19.23■□□□□ 0.67
LDLR-204ENST00000545707 PIK3C2AO00443 1686 aa19.22■□□□□ 0.67
LDLR-204ENST00000545707 KCNQ3O43525 872 aa19.22■□□□□ 0.67
LDLR-204ENST00000545707 NBPF7P0C2Y1 421 aaPredicted RBP19.22■□□□□ 0.67
LDLR-204ENST00000545707 LARP6Q9BRS8 491 aaKnown RBP19.22■□□□□ 0.67
LDLR-204ENST00000545707 GDPD2Q9HCC8 539 aa19.22■□□□□ 0.67
LDLR-204ENST00000545707 BRD1O95696 1058 aa19.22■□□□□ 0.67
LDLR-204ENST00000545707 CUL4AQ13619 759 aa19.22■□□□□ 0.67
LDLR-204ENST00000545707 DIP2AQ14689 1571 aa19.21■□□□□ 0.67
LDLR-204ENST00000545707 SSH3Q8TE77 659 aa19.21■□□□□ 0.67
LDLR-204ENST00000545707 SOS1Q07889 1333 aaPredicted RBP19.21■□□□□ 0.67
LDLR-204ENST00000545707 SRGAP3O43295 1099 aa19.21■□□□□ 0.67
LDLR-204ENST00000545707 DTNBO60941 627 aa19.2■□□□□ 0.66
LDLR-204ENST00000545707 TPRNQ4KMQ1 711 aa19.2■□□□□ 0.66
LDLR-204ENST00000545707 SRCIN1Q9C0H9 1055 aa19.2■□□□□ 0.66
LDLR-204ENST00000545707 RNF214Q8ND24 703 aa19.2■□□□□ 0.66
LDLR-204ENST00000545707 CHPF2Q9P2E5 772 aa19.2■□□□□ 0.66
LDLR-204ENST00000545707 MCM2P49736 904 aa19.19■□□□□ 0.66
LDLR-204ENST00000545707 ZSCAN30Q86W11 494 aa19.19■□□□□ 0.66
LDLR-204ENST00000545707 RHPN1Q8TCX5 695 aa19.19■□□□□ 0.66
LDLR-204ENST00000545707 NWD1Q149M9 1564 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms