RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 QSER1Q2KHR3 1735 aa12.49□□□□□ -0.41
YBX3-215ENST00000544504 APAF1O14727 1248 aa12.49□□□□□ -0.41
YBX3-215ENST00000544504 IL2RBP14784 551 aa12.49□□□□□ -0.41
YBX3-215ENST00000544504 LMOD3Q0VAK6 560 aa12.49□□□□□ -0.41
YBX3-215ENST00000544504 NLRP2Q9NX02 1062 aa12.49□□□□□ -0.41
YBX3-215ENST00000544504 BTAF1O14981 1849 aa12.48□□□□□ -0.41
YBX3-215ENST00000544504 CCDC27Q2M243 656 aa12.48□□□□□ -0.41
YBX3-215ENST00000544504 NBPF6Q5VWK0 638 aa12.48□□□□□ -0.41
YBX3-215ENST00000544504 GAS2L2Q8NHY3 880 aa12.48□□□□□ -0.41
YBX3-215ENST00000544504 ZNF526Q8TF50 670 aaPredicted RBP12.48□□□□□ -0.41
YBX3-215ENST00000544504 NBPF4Q96M43 638 aa12.48□□□□□ -0.41
YBX3-215ENST00000544504 RGPD5Q99666 1765 aa12.48□□□□□ -0.41
YBX3-215ENST00000544504 NFE2L2Q16236 605 aa12.47□□□□□ -0.41
YBX3-215ENST00000544504 AMOTQ4VCS5 1084 aa12.47□□□□□ -0.41
YBX3-215ENST00000544504 RAPGEF4Q8WZA2 1011 aa12.47□□□□□ -0.41
YBX3-215ENST00000544504 PCNTO95613 3336 aa12.47□□□□□ -0.41
YBX3-215ENST00000544504 TMPOP42166 694 aaKnown RBP12.46□□□□□ -0.41
YBX3-215ENST00000544504 APLP1P51693 650 aa12.46□□□□□ -0.41
YBX3-215ENST00000544504 CALD1Q05682 793 aaKnown RBP12.46□□□□□ -0.41
YBX3-215ENST00000544504 AEBP1Q8IUX7 1158 aa12.46□□□□□ -0.41
YBX3-215ENST00000544504 CD2APQ9Y5K6 639 aa12.46□□□□□ -0.41
YBX3-215ENST00000544504 PLEKHO1Q53GL0 409 aaPredicted RBP12.45□□□□□ -0.42
YBX3-215ENST00000544504 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.45□□□□□ -0.42
YBX3-215ENST00000544504 MSH5O43196 834 aa12.44□□□□□ -0.42
YBX3-215ENST00000544504 TATP17735 454 aaPredicted RBP12.44□□□□□ -0.42
YBX3-215ENST00000544504 KCNQ4P56696 695 aa12.44□□□□□ -0.42
YBX3-215ENST00000544504 RIPK4P57078 832 aa12.44□□□□□ -0.42
YBX3-215ENST00000544504 WDR63Q8IWG1 891 aa12.44□□□□□ -0.42
YBX3-215ENST00000544504 KIF3CO14782 793 aa12.43□□□□□ -0.42
YBX3-215ENST00000544504 HTATSF1O43719 755 aaKnown RBP12.43□□□□□ -0.42
YBX3-215ENST00000544504 PHACTR3Q96KR7 559 aa12.43□□□□□ -0.42
YBX3-215ENST00000544504 SPG7Q9UQ90 795 aa12.43□□□□□ -0.42
YBX3-215ENST00000544504 GOLGA2Q08379 1002 aa12.42□□□□□ -0.42
YBX3-215ENST00000544504 NEUROD2Q15784 382 aa12.42□□□□□ -0.42
YBX3-215ENST00000544504 COL23A1Q86Y22 540 aaPredicted RBP12.42□□□□□ -0.42
YBX3-215ENST00000544504 WWC1Q8IX03 1113 aa12.42□□□□□ -0.42
YBX3-215ENST00000544504 USHBP1Q8N6Y0 703 aa12.42□□□□□ -0.42
YBX3-215ENST00000544504 DNAJC5GQ8N7S2 189 aa12.42□□□□□ -0.42
YBX3-215ENST00000544504 DDX54Q8TDD1 881 aaKnown RBP12.42□□□□□ -0.42
YBX3-215ENST00000544504 RTF1Q92541 710 aaKnown RBP12.42□□□□□ -0.42
YBX3-215ENST00000544504 SYTL4Q96C24 671 aaPredicted RBP12.42□□□□□ -0.42
YBX3-215ENST00000544504 CCNL1Q9UK58 526 aaPredicted RBP12.42□□□□□ -0.42
YBX3-215ENST00000544504 SALL2Q9Y467 1007 aaPredicted RBP12.42□□□□□ -0.42
YBX3-215ENST00000544504 RGPD2P0DJD1 1756 aa12.42□□□□□ -0.42
YBX3-215ENST00000544504 IL16Q14005 1332 aa12.41□□□□□ -0.42
YBX3-215ENST00000544504 PRIM1P49642 420 aaKnown RBP12.41□□□□□ -0.42
YBX3-215ENST00000544504 RRP7AQ9Y3A4 280 aaKnown RBP12.41□□□□□ -0.42
YBX3-215ENST00000544504 ZNF521Q96K83 1311 aa12.4□□□□□ -0.42
YBX3-215ENST00000544504 GNAT3A8MTJ3 354 aa12.4□□□□□ -0.42
YBX3-215ENST00000544504 E9PSI1 815 aa12.4□□□□□ -0.42
YBX3-215ENST00000544504 HMGB2P26583 209 aaKnown RBP12.4□□□□□ -0.42
YBX3-215ENST00000544504 MTHFSDQ2M296 383 aaKnown RBP12.4□□□□□ -0.42
YBX3-215ENST00000544504 C1orf141Q5JVX7 400 aa12.4□□□□□ -0.42
YBX3-215ENST00000544504 MSL1Q68DK7 614 aa12.4□□□□□ -0.42
YBX3-215ENST00000544504 TUBGCP6Q96RT7 1819 aa12.39□□□□□ -0.43
YBX3-215ENST00000544504 TOMM70O94826 608 aa12.39□□□□□ -0.43
YBX3-215ENST00000544504 FLAD1Q8NFF5 587 aa12.39□□□□□ -0.43
YBX3-215ENST00000544504 MYH16Q9H6N6 1097 aa12.39□□□□□ -0.43
YBX3-215ENST00000544504 HSP90AB1P08238 724 aaKnown RBP12.38□□□□□ -0.43
YBX3-215ENST00000544504 AKAP4Q5JQC9 854 aa12.38□□□□□ -0.43
YBX3-215ENST00000544504 ZNF530Q6P9A1 599 aaPredicted RBP12.38□□□□□ -0.43
YBX3-215ENST00000544504 TRIM35Q9UPQ4 493 aa12.38□□□□□ -0.43
YBX3-215ENST00000544504 COL13A1Q5TAT6 717 aaPredicted RBP12.37□□□□□ -0.43
YBX3-215ENST00000544504 LY75O60449 1722 aa12.37□□□□□ -0.43
YBX3-215ENST00000544504 PKD1L3Q7Z443 1732 aa12.37□□□□□ -0.43
YBX3-215ENST00000544504 MEGF6O75095 1541 aa12.37□□□□□ -0.43
YBX3-215ENST00000544504 PCDH11XQ9BZA7 1347 aa12.37□□□□□ -0.43
YBX3-215ENST00000544504 PCDH11YQ9BZA8 1340 aa12.37□□□□□ -0.43
YBX3-215ENST00000544504 GNAI1P63096 354 aa12.36□□□□□ -0.43
YBX3-215ENST00000544504 IFNL2Q8IZJ0 200 aa12.36□□□□□ -0.43
YBX3-215ENST00000544504 ZCRB1Q8TBF4 217 aaKnown RBP12.36□□□□□ -0.43
YBX3-215ENST00000544504 DLG5Q8TDM6 1919 aa12.36□□□□□ -0.43
YBX3-215ENST00000544504 CAPN15O75808 1086 aa12.35□□□□□ -0.43
YBX3-215ENST00000544504 SLFN5Q08AF3 891 aa12.35□□□□□ -0.43
YBX3-215ENST00000544504 IFT57Q9NWB7 429 aa12.35□□□□□ -0.43
YBX3-215ENST00000544504 BABAM1Q9NWV8 329 aa12.35□□□□□ -0.43
YBX3-215ENST00000544504 PRELPP51888 382 aa12.34□□□□□ -0.43
YBX3-215ENST00000544504 JMYQ8N9B5 988 aa12.34□□□□□ -0.43
YBX3-215ENST00000544504 PHKG2P15735 406 aa12.33□□□□□ -0.44
YBX3-215ENST00000544504 TEFQ10587 303 aa12.33□□□□□ -0.44
YBX3-215ENST00000544504 TRMT2AQ8IZ69 625 aaKnown RBP12.33□□□□□ -0.44
YBX3-215ENST00000544504 TNS4Q8IZW8 715 aa12.33□□□□□ -0.44
YBX3-215ENST00000544504 KLRG1Q96E93 195 aa12.33□□□□□ -0.44
YBX3-215ENST00000544504 CFAP44Q96MT7 982 aa12.33□□□□□ -0.44
YBX3-215ENST00000544504 WWC3Q9ULE0 1092 aa12.33□□□□□ -0.44
YBX3-215ENST00000544504 DOT1LQ8TEK3 1739 aa12.32□□□□□ -0.44
YBX3-215ENST00000544504 CT47B1P0C2W7 299 aaPredicted RBP12.32□□□□□ -0.44
YBX3-215ENST00000544504 DCAF5Q96JK2 942 aa12.32□□□□□ -0.44
YBX3-215ENST00000544504 CEMIPQ8WUJ3 1361 aa12.31□□□□□ -0.44
YBX3-215ENST00000544504 KAT6BQ8WYB5 2073 aa12.31□□□□□ -0.44
YBX3-215ENST00000544504 CICQ96RK0 1608 aaPredicted RBP12.31□□□□□ -0.44
YBX3-215ENST00000544504 DUSP27Q5VZP5 1158 aa12.31□□□□□ -0.44
YBX3-215ENST00000544504 MCM10Q7L590 875 aa12.31□□□□□ -0.44
YBX3-215ENST00000544504 RBM46Q8TBY0 533 aaKnown RBP12.31□□□□□ -0.44
YBX3-215ENST00000544504 CDCA7LQ96GN5 454 aa12.31□□□□□ -0.44
YBX3-215ENST00000544504 RNMTO43148 476 aaKnown RBP12.3□□□□□ -0.44
YBX3-215ENST00000544504 ZNF853P0CG23 659 aa12.3□□□□□ -0.44
YBX3-215ENST00000544504 NKX1-1Q15270 411 aaPredicted RBP12.3□□□□□ -0.44
YBX3-215ENST00000544504 TAF7Q15545 349 aaPredicted RBP12.3□□□□□ -0.44
YBX3-215ENST00000544504 IL17REQ8NFR9 667 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms