RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 MCM4P33991 863 aa22.29■■□□□ 1.16
VIM-209ENST00000544301 HDGFL1Q5TGJ6 251 aa22.29■■□□□ 1.16
VIM-209ENST00000544301 LGR6Q9HBX8 967 aa22.29■■□□□ 1.16
VIM-209ENST00000544301 N4BP2Q86UW6 1770 aaPredicted RBP22.29■■□□□ 1.16
VIM-209ENST00000544301 CD2BP2O95400 341 aaKnown RBP22.28■■□□□ 1.16
VIM-209ENST00000544301 RBM42Q9BTD8 480 aaKnown RBP22.28■■□□□ 1.16
VIM-209ENST00000544301 RGPD2P0DJD1 1756 aa22.28■■□□□ 1.16
VIM-209ENST00000544301 PXDNLA1KZ92 1463 aa22.28■■□□□ 1.16
VIM-209ENST00000544301 LRRC59Q96AG4 307 aaKnown RBP22.27■■□□□ 1.16
VIM-209ENST00000544301 OSBPL3Q9H4L5 887 aa22.27■■□□□ 1.16
VIM-209ENST00000544301 GCP02774 474 aa22.27■■□□□ 1.15
VIM-209ENST00000544301 ATP8B2P98198 1209 aa22.27■■□□□ 1.15
VIM-209ENST00000544301 EIF4A1P60842 406 aaKnown RBP22.26■■□□□ 1.15
VIM-209ENST00000544301 XPCQ01831 940 aaPredicted RBP22.26■■□□□ 1.15
VIM-209ENST00000544301 ARHGEF25Q86VW2 580 aa22.26■■□□□ 1.15
VIM-209ENST00000544301 USP26Q9BXU7 913 aa22.26■■□□□ 1.15
VIM-209ENST00000544301 EXOC6BQ9Y2D4 811 aa22.26■■□□□ 1.15
VIM-209ENST00000544301 SLIT3O75094 1523 aa22.26■■□□□ 1.15
VIM-209ENST00000544301 PHAXQ9H814 394 aaKnown RBP22.25■■□□□ 1.15
VIM-209ENST00000544301 PNMA6EA0A0J9YXQ4 647 aa22.25■■□□□ 1.15
VIM-209ENST00000544301 K7ELQ4 463 aaPredicted RBP22.25■■□□□ 1.15
VIM-209ENST00000544301 PDE1AP54750 535 aa22.25■■□□□ 1.15
VIM-209ENST00000544301 CASC1Q6TDU7 716 aa22.25■■□□□ 1.15
VIM-209ENST00000544301 LMO7Q8WWI1 1683 aa22.25■■□□□ 1.15
VIM-209ENST00000544301 KDM3BQ7LBC6 1761 aa22.24■■□□□ 1.15
VIM-209ENST00000544301 AKAP4Q5JQC9 854 aa22.24■■□□□ 1.15
VIM-209ENST00000544301 USP44Q9H0E7 712 aa22.24■■□□□ 1.15
VIM-209ENST00000544301 PLEKHO1Q53GL0 409 aaPredicted RBP22.24■■□□□ 1.15
VIM-209ENST00000544301 ZNF530Q6P9A1 599 aaPredicted RBP22.24■■□□□ 1.15
VIM-209ENST00000544301 CIZ1Q9ULV3 898 aaPredicted RBP22.24■■□□□ 1.15
VIM-209ENST00000544301 LRRFIP2Q9Y608 721 aaKnown RBP22.24■■□□□ 1.15
VIM-209ENST00000544301 HOXB7P09629 217 aa22.23■■□□□ 1.15
VIM-209ENST00000544301 NCAPD2Q15021 1401 aa22.23■■□□□ 1.15
VIM-209ENST00000544301 LRRCC1Q9C099 1032 aa22.22■■□□□ 1.15
VIM-209ENST00000544301 SALL3Q9BXA9 1300 aa22.22■■□□□ 1.15
VIM-209ENST00000544301 EIF2S2P20042 333 aaKnown RBP22.22■■□□□ 1.15
VIM-209ENST00000544301 RABEP1Q15276 862 aa22.21■■□□□ 1.15
VIM-209ENST00000544301 AMOTQ4VCS5 1084 aa22.21■■□□□ 1.15
VIM-209ENST00000544301 IBTKQ9P2D0 1353 aaPredicted RBP22.21■■□□□ 1.15
VIM-209ENST00000544301 KCNQ3O43525 872 aa22.21■■□□□ 1.15
VIM-209ENST00000544301 PLEKHG5O94827 1062 aa22.21■■□□□ 1.15
VIM-209ENST00000544301 UBTFL1P0CB47 393 aaPredicted RBP22.21■■□□□ 1.15
VIM-209ENST00000544301 TEFQ10587 303 aa22.21■■□□□ 1.15
VIM-209ENST00000544301 TRPM3Q9HCF6 1732 aaPredicted RBP22.2■■□□□ 1.14
VIM-209ENST00000544301 LMOD2Q6P5Q4 547 aa22.2■■□□□ 1.14
VIM-209ENST00000544301 MPRIPQ6WCQ1 1025 aa22.2■■□□□ 1.14
VIM-209ENST00000544301 ANKRD24Q8TF21 1146 aa22.2■■□□□ 1.14
VIM-209ENST00000544301 BTBD11A6QL63 1104 aa22.19■■□□□ 1.14
VIM-209ENST00000544301 KRT28Q7Z3Y7 464 aa22.19■■□□□ 1.14
VIM-209ENST00000544301 PROSER2Q86WR7 435 aaPredicted RBP22.19■■□□□ 1.14
VIM-209ENST00000544301 CHMP4AQ9BY43 222 aa22.19■■□□□ 1.14
VIM-209ENST00000544301 CHPF2Q9P2E5 772 aa22.19■■□□□ 1.14
VIM-209ENST00000544301 HSP90AA1P07900 732 aaKnown RBP22.18■■□□□ 1.14
VIM-209ENST00000544301 IL27Q8NEV9 243 aa22.18■■□□□ 1.14
VIM-209ENST00000544301 SRCIN1Q9C0H9 1055 aa22.18■■□□□ 1.14
VIM-209ENST00000544301 PXDNQ92626 1479 aa22.18■■□□□ 1.14
VIM-209ENST00000544301 RNMTO43148 476 aaKnown RBP22.18■■□□□ 1.14
VIM-209ENST00000544301 BRPF3Q9ULD4 1205 aa22.18■■□□□ 1.14
VIM-209ENST00000544301 REC8O95072 547 aa22.17■■□□□ 1.14
VIM-209ENST00000544301 RAB3GAP1Q15042 981 aa22.17■■□□□ 1.14
VIM-209ENST00000544301 C1orf141Q5JVX7 400 aa22.17■■□□□ 1.14
VIM-209ENST00000544301 ERC2O15083 957 aa22.16■■□□□ 1.14
VIM-209ENST00000544301 MX1P20591 662 aa22.16■■□□□ 1.14
VIM-209ENST00000544301 TSHZ3Q63HK5 1081 aa22.16■■□□□ 1.14
VIM-209ENST00000544301 SSH3Q8TE77 659 aa22.16■■□□□ 1.14
VIM-209ENST00000544301 TNPO1Q92973 898 aaKnown RBP22.16■■□□□ 1.14
VIM-209ENST00000544301 FOXD4L1Q9NU39 408 aa22.16■■□□□ 1.14
VIM-209ENST00000544301 AXIN2Q9Y2T1 843 aa22.16■■□□□ 1.14
VIM-209ENST00000544301 C1orf167Q5SNV9 1468 aa22.16■■□□□ 1.14
VIM-209ENST00000544301 CAMTA1Q9Y6Y1 1673 aa22.16■■□□□ 1.14
VIM-209ENST00000544301 TUBGCP6Q96RT7 1819 aa22.15■■□□□ 1.14
VIM-209ENST00000544301 DDX11L8A8MPP1 907 aa22.15■■□□□ 1.14
VIM-209ENST00000544301 OVOS2A0A0G2JMS6 1433 aa22.15■■□□□ 1.14
VIM-209ENST00000544301 KIF1AQ12756 1690 aa22.15■■□□□ 1.14
VIM-209ENST00000544301 STAP2Q9UGK3 403 aa22.15■■□□□ 1.14
VIM-209ENST00000544301 TRAK2O60296 914 aa22.14■■□□□ 1.13
VIM-209ENST00000544301 BEND3Q5T5X7 828 aa22.14■■□□□ 1.13
VIM-209ENST00000544301 DNAAF4Q8WXU2 420 aa22.14■■□□□ 1.13
VIM-209ENST00000544301 PI4KAP2A4QPH2 592 aa22.13■■□□□ 1.13
VIM-209ENST00000544301 PI4KAP1Q8N8J0 262 aa22.13■■□□□ 1.13
VIM-209ENST00000544301 C19orf44Q9H6X5 657 aa22.13■■□□□ 1.13
VIM-209ENST00000544301 POLA2Q14181 598 aa22.13■■□□□ 1.13
VIM-209ENST00000544301 PPP1R42Q7Z4L9 355 aa22.13■■□□□ 1.13
VIM-209ENST00000544301 MST1RQ04912 1400 aa22.12■■□□□ 1.13
VIM-209ENST00000544301 ANXA1P04083 346 aa22.12■■□□□ 1.13
VIM-209ENST00000544301 ADCY9O60503 1353 aa22.11■■□□□ 1.13
VIM-209ENST00000544301 RAB11FIP3O75154 756 aa22.1■■□□□ 1.13
VIM-209ENST00000544301 NBPF7P0C2Y1 421 aaPredicted RBP22.1■■□□□ 1.13
VIM-209ENST00000544301 DBF4Q9UBU7 674 aaPredicted RBP22.1■■□□□ 1.13
VIM-209ENST00000544301 HEG1Q9ULI3 1381 aa22.1■■□□□ 1.13
VIM-209ENST00000544301 GBP4Q96PP9 640 aa22.1■■□□□ 1.13
VIM-209ENST00000544301 ESYT1Q9BSJ8 1104 aa22.1■■□□□ 1.13
VIM-209ENST00000544301 AOX1Q06278 1338 aa22.1■■□□□ 1.13
VIM-209ENST00000544301 GIGYF1O75420 1035 aaPredicted RBP22.09■■□□□ 1.13
VIM-209ENST00000544301 RGPD5Q99666 1765 aa22.09■■□□□ 1.13
VIM-209ENST00000544301 ALS2Q96Q42 1657 aa22.09■■□□□ 1.13
VIM-209ENST00000544301 IL1RAPL2Q9NP60 686 aa22.09■■□□□ 1.13
VIM-209ENST00000544301 SURF6O75683 361 aaKnown RBP22.08■■□□□ 1.13
VIM-209ENST00000544301 GZF1Q9H116 711 aaPredicted RBP22.08■■□□□ 1.13
VIM-209ENST00000544301 ERBB3P21860 1342 aa22.08■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms