RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 AEBP1Q8IUX7 1158 aa16.81■□□□□ 0.28
VPS33A-208ENST00000543633 KDRP35968 1356 aa16.81■□□□□ 0.28
VPS33A-208ENST00000543633 ZSCAN23Q3MJ62 389 aa16.8■□□□□ 0.28
VPS33A-208ENST00000543633 OTUD7AQ8TE49 926 aaPredicted RBP16.8■□□□□ 0.28
VPS33A-208ENST00000543633 TERF1P54274 439 aa16.8■□□□□ 0.28
VPS33A-208ENST00000543633 ANAPC15P60006 121 aa16.8■□□□□ 0.28
VPS33A-208ENST00000543633 SALL3Q9BXA9 1300 aa16.79■□□□□ 0.28
VPS33A-208ENST00000543633 PDE1AP54750 535 aa16.79■□□□□ 0.28
VPS33A-208ENST00000543633 PDLIM2Q96JY6 352 aa16.79■□□□□ 0.28
VPS33A-208ENST00000543633 TTC21AQ8NDW8 1320 aa16.79■□□□□ 0.28
VPS33A-208ENST00000543633 KDM4FA0A1W2PPD8 638 aa16.79■□□□□ 0.28
VPS33A-208ENST00000543633 GLIPR1L2Q4G1C9 344 aa16.79■□□□□ 0.28
VPS33A-208ENST00000543633 USP54Q70EL1 1684 aa16.78■□□□□ 0.28
VPS33A-208ENST00000543633 AOX1Q06278 1338 aa16.78■□□□□ 0.28
VPS33A-208ENST00000543633 MBD3O95983 291 aa16.78■□□□□ 0.28
VPS33A-208ENST00000543633 AMOTL2Q9Y2J4 779 aa16.78■□□□□ 0.28
VPS33A-208ENST00000543633 SMARCA5O60264 1052 aaPredicted RBP16.77■□□□□ 0.28
VPS33A-208ENST00000543633 MCCP23508 829 aa16.77■□□□□ 0.28
VPS33A-208ENST00000543633 KRT24Q2M2I5 525 aa16.77■□□□□ 0.28
VPS33A-208ENST00000543633 CAVIN1Q6NZI2 390 aaKnown RBP16.77■□□□□ 0.28
VPS33A-208ENST00000543633 MCM10Q7L590 875 aa16.77■□□□□ 0.28
VPS33A-208ENST00000543633 SBNO1A3KN83 1393 aa16.77■□□□□ 0.27
VPS33A-208ENST00000543633 FLT4P35916 1363 aa16.77■□□□□ 0.27
VPS33A-208ENST00000543633 HTATSF1O43719 755 aaKnown RBP16.77■□□□□ 0.27
VPS33A-208ENST00000543633 GNAI2P04899 355 aa16.77■□□□□ 0.27
VPS33A-208ENST00000543633 SLC4A2P04920 1241 aa16.77■□□□□ 0.27
VPS33A-208ENST00000543633 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.77■□□□□ 0.27
VPS33A-208ENST00000543633 INTS4Q96HW7 963 aaKnown RBP16.77■□□□□ 0.27
VPS33A-208ENST00000543633 CUL4AQ13619 759 aa16.76■□□□□ 0.27
VPS33A-208ENST00000543633 SRCIN1Q9C0H9 1055 aa16.76■□□□□ 0.27
VPS33A-208ENST00000543633 ACEP12821 1306 aa16.76■□□□□ 0.27
VPS33A-208ENST00000543633 NCKAP5LQ9HCH0 1330 aa16.76■□□□□ 0.27
VPS33A-208ENST00000543633 GNAI3P08754 354 aa16.75■□□□□ 0.27
VPS33A-208ENST00000543633 MSNP26038 577 aaKnown RBP16.75■□□□□ 0.27
VPS33A-208ENST00000543633 ZDHHC9Q9Y397 364 aa16.75■□□□□ 0.27
VPS33A-208ENST00000543633 OFD1O75665 1012 aa16.75■□□□□ 0.27
VPS33A-208ENST00000543633 ESYT1Q9BSJ8 1104 aa16.75■□□□□ 0.27
VPS33A-208ENST00000543633 MCM5P33992 734 aa16.74■□□□□ 0.27
VPS33A-208ENST00000543633 LRSAM1Q6UWE0 723 aa16.74■□□□□ 0.27
VPS33A-208ENST00000543633 ZGPATQ8N5A5 531 aaKnown RBP16.74■□□□□ 0.27
VPS33A-208ENST00000543633 RTF1Q92541 710 aaKnown RBP16.74■□□□□ 0.27
VPS33A-208ENST00000543633 STAP2Q9UGK3 403 aa16.74■□□□□ 0.27
VPS33A-208ENST00000543633 CHD2O14647 1828 aaKnown RBP16.74■□□□□ 0.27
VPS33A-208ENST00000543633 NPHP4O75161 1426 aaPredicted RBP16.74■□□□□ 0.27
VPS33A-208ENST00000543633 PKP1Q13835 747 aa16.74■□□□□ 0.27
VPS33A-208ENST00000543633 LRRCC1Q9C099 1032 aa16.74■□□□□ 0.27
VPS33A-208ENST00000543633 BABAM1Q9NWV8 329 aa16.74■□□□□ 0.27
VPS33A-208ENST00000543633 TSPYL4Q9UJ04 414 aa16.74■□□□□ 0.27
VPS33A-208ENST00000543633 ZNF500O60304 480 aaPredicted RBP16.73■□□□□ 0.27
VPS33A-208ENST00000543633 BRD1O95696 1058 aa16.73■□□□□ 0.27
VPS33A-208ENST00000543633 HSP90AA2PQ14568 343 aaPredicted RBP16.73■□□□□ 0.27
VPS33A-208ENST00000543633 GPT2Q8TD30 523 aa16.73■□□□□ 0.27
VPS33A-208ENST00000543633 STK31Q9BXU1 1019 aa16.73■□□□□ 0.27
VPS33A-208ENST00000543633 IGSF1Q8N6C5 1336 aa16.73■□□□□ 0.27
VPS33A-208ENST00000543633 TMX3Q96JJ7 454 aa16.72■□□□□ 0.27
VPS33A-208ENST00000543633 NOL7Q9UMY1 257 aaKnown RBP16.72■□□□□ 0.27
VPS33A-208ENST00000543633 MAP3K19Q56UN5 1328 aa16.72■□□□□ 0.27
VPS33A-208ENST00000543633 PRPF40AO75400 957 aaKnown RBP16.72■□□□□ 0.27
VPS33A-208ENST00000543633 KCNA6P17658 529 aa16.72■□□□□ 0.27
VPS33A-208ENST00000543633 NCLP19338 710 aaKnown RBP16.72■□□□□ 0.27
VPS33A-208ENST00000543633 HSP90AB2PQ58FF8 381 aa16.72■□□□□ 0.27
VPS33A-208ENST00000543633 RBSNQ9H1K0 784 aa16.72■□□□□ 0.27
VPS33A-208ENST00000543633 MX1P20591 662 aa16.71■□□□□ 0.27
VPS33A-208ENST00000543633 NEK4P51957 841 aa16.7■□□□□ 0.26
VPS33A-208ENST00000543633 ATP8B2P98198 1209 aa16.7■□□□□ 0.26
VPS33A-208ENST00000543633 CCDC30Q5VVM6 783 aa16.7■□□□□ 0.26
VPS33A-208ENST00000543633 KLHL34Q8N239 644 aa16.7■□□□□ 0.26
VPS33A-208ENST00000543633 SYAP1Q96A49 352 aaPredicted RBP16.7■□□□□ 0.26
VPS33A-208ENST00000543633 PIK3C2AO00443 1686 aa16.7■□□□□ 0.26
VPS33A-208ENST00000543633 PRIM1P49642 420 aaKnown RBP16.7■□□□□ 0.26
VPS33A-208ENST00000543633 MTHFSDQ2M296 383 aaKnown RBP16.7■□□□□ 0.26
VPS33A-208ENST00000543633 CRYBG1Q9Y4K1 1723 aa16.7■□□□□ 0.26
VPS33A-208ENST00000543633 APBB1O00213 710 aa16.69■□□□□ 0.26
VPS33A-208ENST00000543633 CHMLP26374 656 aa16.69■□□□□ 0.26
VPS33A-208ENST00000543633 G2E3Q7L622 706 aa16.69■□□□□ 0.26
VPS33A-208ENST00000543633 SLC4A10Q6U841 1118 aa16.69■□□□□ 0.26
VPS33A-208ENST00000543633 TMEM63CQ9P1W3 806 aa16.69■□□□□ 0.26
VPS33A-208ENST00000543633 FLIIQ13045 1269 aa16.68■□□□□ 0.26
VPS33A-208ENST00000543633 KIAA1211Q6ZU35 1233 aa16.68■□□□□ 0.26
VPS33A-208ENST00000543633 PHF14O94880 888 aa16.67■□□□□ 0.26
VPS33A-208ENST00000543633 CCDC39Q9UFE4 941 aa16.67■□□□□ 0.26
VPS33A-208ENST00000543633 F6X3S4 739 aa16.67■□□□□ 0.26
VPS33A-208ENST00000543633 CSPP1Q1MSJ5 1256 aa16.67■□□□□ 0.26
VPS33A-208ENST00000543633 ZKSCAN5Q9Y2L8 839 aa16.67■□□□□ 0.26
VPS33A-208ENST00000543633 MARF1Q9Y4F3 1742 aaKnown RBP16.67■□□□□ 0.26
VPS33A-208ENST00000543633 NWD1Q149M9 1564 aa16.66■□□□□ 0.26
VPS33A-208ENST00000543633 EXOC6BQ9Y2D4 811 aa16.66■□□□□ 0.26
VPS33A-208ENST00000543633 LMTK3Q96Q04 1460 aa16.66■□□□□ 0.26
VPS33A-208ENST00000543633 RAB11FIP3O75154 756 aa16.65■□□□□ 0.26
VPS33A-208ENST00000543633 PLEKHG5O94827 1062 aa16.65■□□□□ 0.26
VPS33A-208ENST00000543633 RBM27Q9P2N5 1060 aaKnown RBP16.65■□□□□ 0.26
VPS33A-208ENST00000543633 WDR33Q9C0J8 1336 aaKnown RBP16.64■□□□□ 0.25
VPS33A-208ENST00000543633 MED1Q15648 1581 aaPredicted RBP16.64■□□□□ 0.25
VPS33A-208ENST00000543633 ANKARQ7Z5J8 1434 aa16.64■□□□□ 0.25
VPS33A-208ENST00000543633 TMEM87AQ8NBN3 555 aa16.64■□□□□ 0.25
VPS33A-208ENST00000543633 ANO2Q9NQ90 1003 aa16.64■□□□□ 0.25
VPS33A-208ENST00000543633 MAP3K5Q99683 1374 aa16.64■□□□□ 0.25
VPS33A-208ENST00000543633 FKBP5Q13451 457 aaPredicted RBP16.63■□□□□ 0.25
VPS33A-208ENST00000543633 PNMA6EA0A0J9YXQ4 647 aa16.63■□□□□ 0.25
VPS33A-208ENST00000543633 SYCE3A1L190 88 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms