RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 MTHFSDQ2M296 383 aaKnown RBP16.52■□□□□ 0.24
VPS33A-207ENST00000542790 MPRIPQ6WCQ1 1025 aa16.52■□□□□ 0.24
VPS33A-207ENST00000542790 ERVV-2B6SEH9 535 aa16.51■□□□□ 0.23
VPS33A-207ENST00000542790 GAS2L2Q8NHY3 880 aa16.51■□□□□ 0.23
VPS33A-207ENST00000542790 PNNQ9H307 717 aaKnown RBP16.51■□□□□ 0.23
VPS33A-207ENST00000542790 TMOD3Q9NYL9 352 aa16.51■□□□□ 0.23
VPS33A-207ENST00000542790 PKD1L3Q7Z443 1732 aa16.5■□□□□ 0.23
VPS33A-207ENST00000542790 NEFMP07197 916 aa16.5■□□□□ 0.23
VPS33A-207ENST00000542790 TXNRD1Q16881 649 aa16.5■□□□□ 0.23
VPS33A-207ENST00000542790 TNS1Q9HBL0 1735 aaKnown RBP16.5■□□□□ 0.23
VPS33A-207ENST00000542790 NBPF14Q5TI25 921 aa16.49■□□□□ 0.23
VPS33A-207ENST00000542790 PIGBQ92521 554 aa16.49■□□□□ 0.23
VPS33A-207ENST00000542790 PHACTR3Q96KR7 559 aa16.49■□□□□ 0.23
VPS33A-207ENST00000542790 SHANK3Q9BYB0 1731 aa16.48■□□□□ 0.23
VPS33A-207ENST00000542790 CABP4P57796 275 aa16.48■□□□□ 0.23
VPS33A-207ENST00000542790 SMARCC1Q92922 1105 aaPredicted RBP16.48■□□□□ 0.23
VPS33A-207ENST00000542790 NHSQ6T4R5 1651 aa16.48■□□□□ 0.23
VPS33A-207ENST00000542790 WDR43Q15061 677 aaKnown RBP eCLIP16.47■□□□□ 0.23
VPS33A-207ENST00000542790 SLC27A3Q5K4L6 730 aa16.47■□□□□ 0.23
VPS33A-207ENST00000542790 GNAT3A8MTJ3 354 aa16.46■□□□□ 0.23
VPS33A-207ENST00000542790 HMGB2P26583 209 aaKnown RBP16.46■□□□□ 0.23
VPS33A-207ENST00000542790 KDM6AO15550 1401 aaPredicted RBP16.45■□□□□ 0.22
VPS33A-207ENST00000542790 HAX1O00165 279 aa16.45■□□□□ 0.22
VPS33A-207ENST00000542790 NFATC2IPQ8NCF5 419 aa16.45■□□□□ 0.22
VPS33A-207ENST00000542790 LGR6Q9HBX8 967 aa16.45■□□□□ 0.22
VPS33A-207ENST00000542790 SBF2Q86WG5 1849 aa16.45■□□□□ 0.22
VPS33A-207ENST00000542790 MAP3K5Q99683 1374 aa16.44■□□□□ 0.22
VPS33A-207ENST00000542790 RNMTO43148 476 aaKnown RBP16.44■□□□□ 0.22
VPS33A-207ENST00000542790 PLEKHF1Q96S99 279 aa16.44■□□□□ 0.22
VPS33A-207ENST00000542790 CCNL1Q9UK58 526 aaPredicted RBP16.44■□□□□ 0.22
VPS33A-207ENST00000542790 FARP1Q9Y4F1 1045 aaPredicted RBP16.44■□□□□ 0.22
VPS33A-207ENST00000542790 MAPK8IP3Q9UPT6 1336 aa16.44■□□□□ 0.22
VPS33A-207ENST00000542790 PALLDQ8WX93 1383 aa16.43■□□□□ 0.22
VPS33A-207ENST00000542790 SLC52A2Q9HAB3 445 aa16.43■□□□□ 0.22
VPS33A-207ENST00000542790 ATG3Q9NT62 314 aa16.43■□□□□ 0.22
VPS33A-207ENST00000542790 ASAP1Q9ULH1 1129 aa16.43■□□□□ 0.22
VPS33A-207ENST00000542790 DOT1LQ8TEK3 1739 aa16.42■□□□□ 0.22
VPS33A-207ENST00000542790 HTATSF1O43719 755 aaKnown RBP16.42■□□□□ 0.22
VPS33A-207ENST00000542790 EVX2Q03828 476 aa16.42■□□□□ 0.22
VPS33A-207ENST00000542790 R3HDM1Q15032 1099 aaKnown RBP16.42■□□□□ 0.22
VPS33A-207ENST00000542790 RTF1Q92541 710 aaKnown RBP16.42■□□□□ 0.22
VPS33A-207ENST00000542790 LRRC4BQ9NT99 713 aa16.42■□□□□ 0.22
VPS33A-207ENST00000542790 IL17REQ8NFR9 667 aa16.41■□□□□ 0.22
VPS33A-207ENST00000542790 STK32BQ9NY57 414 aa16.41■□□□□ 0.22
VPS33A-207ENST00000542790 ADAMTS8Q9UP79 889 aa16.41■□□□□ 0.22
VPS33A-207ENST00000542790 TEFQ10587 303 aa16.4■□□□□ 0.22
VPS33A-207ENST00000542790 NFE2L2Q16236 605 aa16.4■□□□□ 0.22
VPS33A-207ENST00000542790 RGPD3A6NKT7 1758 aaPredicted RBP16.4■□□□□ 0.22
VPS33A-207ENST00000542790 RGPD4Q7Z3J3 1758 aa16.4■□□□□ 0.22
VPS33A-207ENST00000542790 LOC102724428A0A0B4J2F2 783 aa16.39■□□□□ 0.21
VPS33A-207ENST00000542790 PSDA5PKW4 1024 aaPredicted RBP16.39■□□□□ 0.21
VPS33A-207ENST00000542790 KCNQ4P56696 695 aa16.39■□□□□ 0.21
VPS33A-207ENST00000542790 SIK1P57059 783 aa16.39■□□□□ 0.21
VPS33A-207ENST00000542790 SLC15A2Q16348 729 aa16.39■□□□□ 0.21
VPS33A-207ENST00000542790 MRS2Q9HD23 443 aa16.39■□□□□ 0.21
VPS33A-207ENST00000542790 BTAF1O14981 1849 aa16.39■□□□□ 0.21
VPS33A-207ENST00000542790 CCDC184Q52MB2 194 aa16.38■□□□□ 0.21
VPS33A-207ENST00000542790 RUNDC1Q96C34 613 aa16.38■□□□□ 0.21
VPS33A-207ENST00000542790 ANO8Q9HCE9 1232 aaPredicted RBP16.38■□□□□ 0.21
VPS33A-207ENST00000542790 TOGARAM1Q9Y4F4 1720 aa16.38■□□□□ 0.21
VPS33A-207ENST00000542790 CEMIPQ8WUJ3 1361 aa16.37■□□□□ 0.21
VPS33A-207ENST00000542790 ATP6V1AP38606 617 aa16.36■□□□□ 0.21
VPS33A-207ENST00000542790 MNX1P50219 401 aaPredicted RBP16.36■□□□□ 0.21
VPS33A-207ENST00000542790 MCM10Q7L590 875 aa16.36■□□□□ 0.21
VPS33A-207ENST00000542790 CCDC146Q8IYE0 955 aa16.36■□□□□ 0.21
VPS33A-207ENST00000542790 RREB1Q92766 1687 aa16.36■□□□□ 0.21
VPS33A-207ENST00000542790 C19orf67A6NJJ6 358 aa16.35■□□□□ 0.21
VPS33A-207ENST00000542790 PTCD1O75127 700 aaKnown RBP16.35■□□□□ 0.21
VPS33A-207ENST00000542790 RIPK4P57078 832 aa16.35■□□□□ 0.21
VPS33A-207ENST00000542790 PNISRQ8TF01 805 aaKnown RBP16.35■□□□□ 0.21
VPS33A-207ENST00000542790 TMPOP42166 694 aaKnown RBP16.34■□□□□ 0.21
VPS33A-207ENST00000542790 LMOD3Q0VAK6 560 aa16.34■□□□□ 0.21
VPS33A-207ENST00000542790 DCTN1Q14203 1278 aa16.34■□□□□ 0.21
VPS33A-207ENST00000542790 ZNF827Q17R98 1081 aa16.34■□□□□ 0.21
VPS33A-207ENST00000542790 TTC5Q8N0Z6 440 aa16.34■□□□□ 0.21
VPS33A-207ENST00000542790 TFCP2L1Q9NZI6 479 aa16.34■□□□□ 0.21
VPS33A-207ENST00000542790 MRC1P22897 1456 aa16.34■□□□□ 0.21
VPS33A-207ENST00000542790 BTBD11A6QL63 1104 aa16.33■□□□□ 0.2
VPS33A-207ENST00000542790 SLC39A6Q13433 755 aa16.33■□□□□ 0.2
VPS33A-207ENST00000542790 NUP188Q5SRE5 1749 aa16.33■□□□□ 0.2
VPS33A-207ENST00000542790 ITPK1Q13572 414 aa16.32■□□□□ 0.2
VPS33A-207ENST00000542790 TAF7Q15545 349 aaPredicted RBP16.32■□□□□ 0.2
VPS33A-207ENST00000542790 ZNF790Q6PG37 636 aa16.32■□□□□ 0.2
VPS33A-207ENST00000542790 SLC4A9Q96Q91 983 aa16.32■□□□□ 0.2
VPS33A-207ENST00000542790 KAT6BQ8WYB5 2073 aa16.31■□□□□ 0.2
VPS33A-207ENST00000542790 VSIG10Q8N0Z9 540 aa16.31■□□□□ 0.2
VPS33A-207ENST00000542790 LINC00116Q8NCU8 138 aa16.31■□□□□ 0.2
VPS33A-207ENST00000542790 AK7Q96M32 723 aa16.31■□□□□ 0.2
VPS33A-207ENST00000542790 ADAMTS7Q9UKP4 1686 aa16.3■□□□□ 0.2
VPS33A-207ENST00000542790 NEUROD2Q15784 382 aa16.3■□□□□ 0.2
VPS33A-207ENST00000542790 RRP7AQ9Y3A4 280 aaKnown RBP16.3■□□□□ 0.2
VPS33A-207ENST00000542790 ITGB4P16144 1822 aa16.3■□□□□ 0.2
VPS33A-207ENST00000542790 DIEXFQ68CQ4 756 aaKnown RBP16.29■□□□□ 0.2
VPS33A-207ENST00000542790 FLAD1Q8NFF5 587 aa16.29■□□□□ 0.2
VPS33A-207ENST00000542790 LY75O60449 1722 aa16.28■□□□□ 0.2
VPS33A-207ENST00000542790 PAPPAQ13219 1627 aa16.28■□□□□ 0.2
VPS33A-207ENST00000542790 APAF1O14727 1248 aa16.28■□□□□ 0.2
VPS33A-207ENST00000542790 RC3H1Q5TC82 1133 aaKnown RBP16.28■□□□□ 0.2
VPS33A-207ENST00000542790 ZNF496Q96IT1 587 aaPredicted RBP16.28■□□□□ 0.2
VPS33A-207ENST00000542790 FMNL2Q96PY5 1086 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms