RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 OSBPL3Q9H4L5 887 aa12.27□□□□□ -0.45
SS18-205ENST00000542420 RGPD5Q99666 1765 aa12.26□□□□□ -0.45
SS18-205ENST00000542420 C19orf44Q9H6X5 657 aa12.26□□□□□ -0.45
SS18-205ENST00000542420 TBC1D2Q9BYX2 928 aa12.26□□□□□ -0.45
SS18-205ENST00000542420 ANTXR1Q9H6X2 564 aa12.26□□□□□ -0.45
SS18-205ENST00000542420 STRCP1A6NGW2 1772 aa12.25□□□□□ -0.45
SS18-205ENST00000542420 PKD1L3Q7Z443 1732 aa12.25□□□□□ -0.45
SS18-205ENST00000542420 PARP4Q9UKK3 1724 aaKnown RBP12.25□□□□□ -0.45
SS18-205ENST00000542420 GNAI2P04899 355 aa12.25□□□□□ -0.45
SS18-205ENST00000542420 FLIIQ13045 1269 aa12.25□□□□□ -0.45
SS18-205ENST00000542420 KRT24Q2M2I5 525 aa12.25□□□□□ -0.45
SS18-205ENST00000542420 PLEKHM2Q8IWE5 1019 aa12.25□□□□□ -0.45
SS18-205ENST00000542420 C1orf115Q9H7X2 142 aa12.25□□□□□ -0.45
SS18-205ENST00000542420 MFAP1P55081 439 aaKnown RBP12.25□□□□□ -0.45
SS18-205ENST00000542420 TTC22Q5TAA0 569 aa12.25□□□□□ -0.45
SS18-205ENST00000542420 GCP02774 474 aa12.24□□□□□ -0.45
SS18-205ENST00000542420 HEG1Q9ULI3 1381 aa12.23□□□□□ -0.45
SS18-205ENST00000542420 AOX1Q06278 1338 aa12.23□□□□□ -0.45
SS18-205ENST00000542420 SLC4A3P48751 1232 aa12.23□□□□□ -0.45
SS18-205ENST00000542420 NBPF6Q5VWK0 638 aa12.23□□□□□ -0.45
SS18-205ENST00000542420 HSCBQ8IWL3 235 aa12.23□□□□□ -0.45
SS18-205ENST00000542420 NBPF4Q96M43 638 aa12.23□□□□□ -0.45
SS18-205ENST00000542420 MEIS3Q99687 375 aa12.23□□□□□ -0.45
SS18-205ENST00000542420 CIZ1Q9ULV3 898 aaPredicted RBP12.23□□□□□ -0.45
SS18-205ENST00000542420 CASC1Q6TDU7 716 aa12.22□□□□□ -0.45
SS18-205ENST00000542420 EPB41L2O43491 1005 aaKnown RBP12.22□□□□□ -0.45
SS18-205ENST00000542420 EIF4A1P60842 406 aaKnown RBP12.22□□□□□ -0.45
SS18-205ENST00000542420 ATP8B2P98198 1209 aa12.22□□□□□ -0.45
SS18-205ENST00000542420 TBC1D9Q6ZT07 1266 aa12.22□□□□□ -0.45
SS18-205ENST00000542420 C14orf37Q86TY3 774 aa12.22□□□□□ -0.45
SS18-205ENST00000542420 PROSER2Q86WR7 435 aaPredicted RBP12.22□□□□□ -0.45
SS18-205ENST00000542420 HDAC5Q9UQL6 1122 aa12.22□□□□□ -0.45
SS18-205ENST00000542420 MRC1P22897 1456 aa12.22□□□□□ -0.45
SS18-205ENST00000542420 XIRP1Q702N8 1843 aaKnown RBP12.21□□□□□ -0.45
SS18-205ENST00000542420 NUTM2GQ5VZR2 741 aa12.21□□□□□ -0.45
SS18-205ENST00000542420 G2E3Q7L622 706 aa12.21□□□□□ -0.45
SS18-205ENST00000542420 KRT28Q7Z3Y7 464 aa12.21□□□□□ -0.45
SS18-205ENST00000542420 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.21□□□□□ -0.453e-7■■□□□ 13.5
SS18-205ENST00000542420 CHMP5Q9NZZ3 219 aa12.21□□□□□ -0.45
SS18-205ENST00000542420 AK9Q5TCS8 1911 aa12.21□□□□□ -0.45
SS18-205ENST00000542420 SRCIN1Q9C0H9 1055 aa12.21□□□□□ -0.46
SS18-205ENST00000542420 BRPF3Q9ULD4 1205 aa12.21□□□□□ -0.46
SS18-205ENST00000542420 HDGFL1Q5TGJ6 251 aa12.2□□□□□ -0.46
SS18-205ENST00000542420 MIS18AQ9NYP9 233 aa12.2□□□□□ -0.46
SS18-205ENST00000542420 GSPT1P15170 499 aaKnown RBP12.2□□□□□ -0.46
SS18-205ENST00000542420 FKBP5Q13451 457 aaPredicted RBP12.2□□□□□ -0.46
SS18-205ENST00000542420 LAMB4A4D0S4 1761 aa12.19□□□□□ -0.46
SS18-205ENST00000542420 RNMTO43148 476 aaKnown RBP12.19□□□□□ -0.46
SS18-205ENST00000542420 RAB11FIP3O75154 756 aa12.19□□□□□ -0.46
SS18-205ENST00000542420 TEFQ10587 303 aa12.19□□□□□ -0.46
SS18-205ENST00000542420 C1orf141Q5JVX7 400 aa12.19□□□□□ -0.46
SS18-205ENST00000542420 LTV1Q96GA3 475 aaPredicted RBP12.19□□□□□ -0.46
SS18-205ENST00000542420 ORAI2Q96SN7 254 aa12.19□□□□□ -0.46
SS18-205ENST00000542420 SALL3Q9BXA9 1300 aa12.19□□□□□ -0.46
SS18-205ENST00000542420 TNS3Q68CZ2 1445 aa12.19□□□□□ -0.46
SS18-205ENST00000542420 ZNF530Q6P9A1 599 aaPredicted RBP12.19□□□□□ -0.46
SS18-205ENST00000542420 ANKRD24Q8TF21 1146 aa12.19□□□□□ -0.46
SS18-205ENST00000542420 CPDO75976 1380 aa12.18□□□□□ -0.46
SS18-205ENST00000542420 PXDNQ92626 1479 aa12.18□□□□□ -0.46
SS18-205ENST00000542420 PTMSP20962 102 aa12.18□□□□□ -0.46
SS18-205ENST00000542420 GSE1Q14687 1217 aa12.18□□□□□ -0.46
SS18-205ENST00000542420 STAP2Q9UGK3 403 aa12.18□□□□□ -0.46
SS18-205ENST00000542420 DDIT3P35638 169 aa12.17□□□□□ -0.46
SS18-205ENST00000542420 RABEP1Q15276 862 aa12.17□□□□□ -0.46
SS18-205ENST00000542420 ERBB3P21860 1342 aa12.17□□□□□ -0.46
SS18-205ENST00000542420 NPHP3Q7Z494 1330 aa12.17□□□□□ -0.46
SS18-205ENST00000542420 ALDH1L1O75891 902 aa12.17□□□□□ -0.46
SS18-205ENST00000542420 REC8O95072 547 aa12.17□□□□□ -0.46
SS18-205ENST00000542420 ATF3P18847 181 aa12.17□□□□□ -0.46
SS18-205ENST00000542420 CADPS2Q86UW7 1296 aa12.17□□□□□ -0.46
SS18-205ENST00000542420 SSH3Q8TE77 659 aa12.17□□□□□ -0.46
SS18-205ENST00000542420 LRRCC1Q9C099 1032 aa12.17□□□□□ -0.46
SS18-205ENST00000542420 POLA2Q14181 598 aa12.16□□□□□ -0.46
SS18-205ENST00000542420 HSP90AB4PQ58FF6 505 aa12.16□□□□□ -0.46
SS18-205ENST00000542420 SLC4A10Q6U841 1118 aa12.16□□□□□ -0.46
SS18-205ENST00000542420 KIF2CQ99661 725 aa12.16□□□□□ -0.46
SS18-205ENST00000542420 DBF4Q9UBU7 674 aaPredicted RBP12.16□□□□□ -0.46
SS18-205ENST00000542420 TMEM94Q12767 1356 aa12.16□□□□□ -0.46
SS18-205ENST00000542420 BTBD11A6QL63 1104 aa12.16□□□□□ -0.46
SS18-205ENST00000542420 F6X3S4 739 aa12.16□□□□□ -0.46
SS18-205ENST00000542420 UBTFL1P0CB47 393 aaPredicted RBP12.16□□□□□ -0.46
SS18-205ENST00000542420 PDE1AP54750 535 aa12.15□□□□□ -0.46
SS18-205ENST00000542420 MTX1Q13505 466 aa12.15□□□□□ -0.46
SS18-205ENST00000542420 USHBP1Q8N6Y0 703 aa12.15□□□□□ -0.46
SS18-205ENST00000542420 IL17RAQ96F46 866 aa12.15□□□□□ -0.46
SS18-205ENST00000542420 USP44Q9H0E7 712 aa12.15□□□□□ -0.46
SS18-205ENST00000542420 C5P01031 1676 aa12.15□□□□□ -0.46
SS18-205ENST00000542420 FRAT2O75474 233 aaPredicted RBP12.15□□□□□ -0.46
SS18-205ENST00000542420 DNAAF4Q8WXU2 420 aa12.15□□□□□ -0.46
SS18-205ENST00000542420 ABCA3Q99758 1704 aa12.14□□□□□ -0.47
SS18-205ENST00000542420 SDSP20132 328 aa12.14□□□□□ -0.47
SS18-205ENST00000542420 USP26Q9BXU7 913 aa12.14□□□□□ -0.47
SS18-205ENST00000542420 HYPKQ9NX55 129 aa12.14□□□□□ -0.47
SS18-205ENST00000542420 K7ELQ4 463 aaPredicted RBP12.14□□□□□ -0.47
SS18-205ENST00000542420 BEND3Q5T5X7 828 aa12.14□□□□□ -0.47
SS18-205ENST00000542420 LGR6Q9HBX8 967 aa12.14□□□□□ -0.47
SS18-205ENST00000542420 SPG7Q9UQ90 795 aa12.13□□□□□ -0.47
SS18-205ENST00000542420 USP42Q9H9J4 1324 aaKnown RBP12.13□□□□□ -0.47
SS18-205ENST00000542420 DDX11L8A8MPP1 907 aa12.12□□□□□ -0.47
SS18-205ENST00000542420 ERC2O15083 957 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms