RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 ARID4AP29374 1257 aaPredicted RBP13.62□□□□□ -0.23
CDH3-203ENST00000542274 CCDC172P0C7W6 258 aa13.62□□□□□ -0.23
CDH3-203ENST00000542274 ZNF513Q8N8E2 541 aaPredicted RBP13.62□□□□□ -0.23
CDH3-203ENST00000542274 SGSM3Q96HU1 749 aa13.62□□□□□ -0.23
CDH3-203ENST00000542274 RAI14Q9P0K7 980 aa13.62□□□□□ -0.23
CDH3-203ENST00000542274 STRCP1A6NGW2 1772 aa13.61□□□□□ -0.23
CDH3-203ENST00000542274 BRPF1P55201 1214 aaPredicted RBP13.61□□□□□ -0.23
CDH3-203ENST00000542274 NUTM2GQ5VZR2 741 aa13.61□□□□□ -0.23
CDH3-203ENST00000542274 PROSER2Q86WR7 435 aaPredicted RBP13.61□□□□□ -0.23
CDH3-203ENST00000542274 WDR63Q8IWG1 891 aa13.61□□□□□ -0.23
CDH3-203ENST00000542274 ATP2B3Q16720 1220 aa13.61□□□□□ -0.23
CDH3-203ENST00000542274 OTUD6BQ8N6M0 293 aa13.61□□□□□ -0.23
CDH3-203ENST00000542274 PHACTR3Q96KR7 559 aa13.61□□□□□ -0.23
CDH3-203ENST00000542274 THUMPD2Q9BTF0 503 aaKnown RBP13.61□□□□□ -0.23
CDH3-203ENST00000542274 MAPK8IP3Q9UPT6 1336 aa13.61□□□□□ -0.23
CDH3-203ENST00000542274 PRKAR2BP31323 418 aa13.6□□□□□ -0.23
CDH3-203ENST00000542274 TSPYL1Q9H0U9 437 aa13.6□□□□□ -0.23
CDH3-203ENST00000542274 ADGRL3Q9HAR2 1447 aa13.6□□□□□ -0.23
CDH3-203ENST00000542274 IGHDP01880 384 aa13.6□□□□□ -0.23
CDH3-203ENST00000542274 CCDC27Q2M243 656 aa13.6□□□□□ -0.23
CDH3-203ENST00000542274 PNPLA6Q8IY17 1366 aa13.59□□□□□ -0.23
CDH3-203ENST00000542274 EXOSC9Q06265 439 aaKnown RBP13.59□□□□□ -0.23
CDH3-203ENST00000542274 SMC4Q9NTJ3 1288 aa13.59□□□□□ -0.23
CDH3-203ENST00000542274 NWD1Q149M9 1564 aa13.59□□□□□ -0.23
CDH3-203ENST00000542274 CCDC66A2RUB6 948 aa13.58□□□□□ -0.24
CDH3-203ENST00000542274 MS4A1P11836 297 aa13.58□□□□□ -0.24
CDH3-203ENST00000542274 LMTK3Q96Q04 1460 aa13.58□□□□□ -0.24
CDH3-203ENST00000542274 ESCO1Q5FWF5 840 aa13.58□□□□□ -0.24
CDH3-203ENST00000542274 TMTC2Q8N394 836 aa13.58□□□□□ -0.24
CDH3-203ENST00000542274 BORCS6Q96GS4 357 aa13.58□□□□□ -0.24
CDH3-203ENST00000542274 NCAPGQ9BPX3 1015 aa13.58□□□□□ -0.24
CDH3-203ENST00000542274 ANKARQ7Z5J8 1434 aa13.58□□□□□ -0.24
CDH3-203ENST00000542274 NBPF10Q6P3W6 841 aaKnown RBP13.57□□□□□ -0.24
CDH3-203ENST00000542274 SSH2Q76I76 1423 aa13.57□□□□□ -0.24
CDH3-203ENST00000542274 LRRC7Q96NW7 1537 aa13.57□□□□□ -0.24
CDH3-203ENST00000542274 XPCQ01831 940 aaPredicted RBP13.57□□□□□ -0.24
CDH3-203ENST00000542274 ZSCAN30Q86W11 494 aa13.57□□□□□ -0.24
CDH3-203ENST00000542274 ORAI2Q96SN7 254 aa13.57□□□□□ -0.24
CDH3-203ENST00000542274 GRPEL1Q9HAV7 217 aa13.57□□□□□ -0.24
CDH3-203ENST00000542274 PHF8Q9UPP1 1060 aa13.57□□□□□ -0.24
CDH3-203ENST00000542274 PIK3C2AO00443 1686 aa13.57□□□□□ -0.24
CDH3-203ENST00000542274 GZF1Q9H116 711 aaPredicted RBP13.56□□□□□ -0.24
CDH3-203ENST00000542274 KIF3AQ9Y496 699 aa13.56□□□□□ -0.24
CDH3-203ENST00000542274 OVOS2A0A0J9YW53 1432 aa13.56□□□□□ -0.24
CDH3-203ENST00000542274 OVOS2Q6IE36 1432 aa13.56□□□□□ -0.24
CDH3-203ENST00000542274 MSNP26038 577 aaKnown RBP13.56□□□□□ -0.24
CDH3-203ENST00000542274 GTF2A1P52655 376 aaPredicted RBP13.56□□□□□ -0.24
CDH3-203ENST00000542274 CALR3Q96L12 384 aaKnown RBP13.56□□□□□ -0.24
CDH3-203ENST00000542274 TNNT3P45378 269 aaPredicted RBP13.55□□□□□ -0.24
CDH3-203ENST00000542274 CENPQQ7L2Z9 268 aaPredicted RBP13.55□□□□□ -0.24
CDH3-203ENST00000542274 STRCQ7RTU9 1775 aa13.55□□□□□ -0.24
CDH3-203ENST00000542274 IL13P35225 146 aa13.55□□□□□ -0.24
CDH3-203ENST00000542274 NBPF6Q5VWK0 638 aa13.55□□□□□ -0.24
CDH3-203ENST00000542274 NBPF5PQ86XG9 351 aaPredicted RBP13.55□□□□□ -0.24
CDH3-203ENST00000542274 NBPF4Q96M43 638 aa13.55□□□□□ -0.24
CDH3-203ENST00000542274 TMEM94Q12767 1356 aa13.54□□□□□ -0.24
CDH3-203ENST00000542274 SSR1P43307 286 aaKnown RBP13.54□□□□□ -0.24
CDH3-203ENST00000542274 NLRP6P59044 892 aa13.54□□□□□ -0.24
CDH3-203ENST00000542274 PDE3AQ14432 1141 aa13.54□□□□□ -0.24
CDH3-203ENST00000542274 PEAK1Q9H792 1746 aa13.54□□□□□ -0.24
CDH3-203ENST00000542274 FAM83GA6ND36 823 aa13.53□□□□□ -0.24
CDH3-203ENST00000542274 SSH1Q8WYL5 1049 aa13.53□□□□□ -0.24
CDH3-203ENST00000542274 ZNF428Q96B54 188 aa13.53□□□□□ -0.24
CDH3-203ENST00000542274 PCDHB15Q9Y5E8 787 aa13.53□□□□□ -0.24
CDH3-203ENST00000542274 AATKQ6ZMQ8 1374 aa13.53□□□□□ -0.24
CDH3-203ENST00000542274 FCHSD2O94868 740 aa13.53□□□□□ -0.24
CDH3-203ENST00000542274 DCTN1Q14203 1278 aa13.53□□□□□ -0.24
CDH3-203ENST00000542274 SPDYE4A6NLX3 237 aa13.52□□□□□ -0.24
CDH3-203ENST00000542274 FOXO3O43524 673 aa13.52□□□□□ -0.24
CDH3-203ENST00000542274 ABTB2Q8N961 1025 aa13.52□□□□□ -0.24
CDH3-203ENST00000542274 MARF1Q9Y4F3 1742 aaKnown RBP13.52□□□□□ -0.24
CDH3-203ENST00000542274 CDK12Q9NYV4 1490 aaPredicted RBP13.52□□□□□ -0.25
CDH3-203ENST00000542274 TTC21AQ8NDW8 1320 aa13.52□□□□□ -0.25
CDH3-203ENST00000542274 ELL2O00472 640 aaPredicted RBP13.52□□□□□ -0.25
CDH3-203ENST00000542274 CT47B1P0C2W7 299 aaPredicted RBP13.52□□□□□ -0.25
CDH3-203ENST00000542274 TNNT1P13805 278 aa13.52□□□□□ -0.25
CDH3-203ENST00000542274 HSP90AB2PQ58FF8 381 aa13.51□□□□□ -0.25
CDH3-203ENST00000542274 CASC1Q6TDU7 716 aa13.51□□□□□ -0.25
CDH3-203ENST00000542274 DNAJC14Q6Y2X3 702 aaPredicted RBP13.51□□□□□ -0.25
CDH3-203ENST00000542274 PSME1Q06323 249 aa13.51□□□□□ -0.25
CDH3-203ENST00000542274 ARMCX6Q7L4S7 300 aa13.51□□□□□ -0.25
CDH3-203ENST00000542274 FEZ2Q9UHY8 353 aaPredicted RBP13.51□□□□□ -0.25
CDH3-203ENST00000542274 KDM4AO75164 1064 aa13.5□□□□□ -0.25
CDH3-203ENST00000542274 CCDC96Q2M329 555 aa13.5□□□□□ -0.25
CDH3-203ENST00000542274 DNAJC21Q5F1R6 531 aaKnown RBP13.5□□□□□ -0.25
CDH3-203ENST00000542274 DDX17Q92841 729 aaKnown RBP13.5□□□□□ -0.25
CDH3-203ENST00000542274 MAP3K19Q56UN5 1328 aa13.5□□□□□ -0.25
CDH3-203ENST00000542274 KIF16BQ96L93 1317 aa13.5□□□□□ -0.25
CDH3-203ENST00000542274 TRIM27P14373 513 aa13.49□□□□□ -0.25
CDH3-203ENST00000542274 ZNF335Q9H4Z2 1342 aaPredicted RBP13.49□□□□□ -0.25
CDH3-203ENST00000542274 USP31Q70CQ4 1352 aa13.49□□□□□ -0.25
CDH3-203ENST00000542274 LMOD2Q6P5Q4 547 aa13.49□□□□□ -0.25
CDH3-203ENST00000542274 SASS6Q6UVJ0 657 aa13.49□□□□□ -0.25
CDH3-203ENST00000542274 TSPYL6Q8N831 410 aa13.49□□□□□ -0.25
CDH3-203ENST00000542274 C19orf44Q9H6X5 657 aa13.49□□□□□ -0.25
CDH3-203ENST00000542274 NOB1Q9ULX3 412 aaKnown RBP13.49□□□□□ -0.25
CDH3-203ENST00000542274 ZBTB7CA1YPR0 619 aa13.48□□□□□ -0.25
CDH3-203ENST00000542274 EIF4A2Q14240 407 aaKnown RBP13.48□□□□□ -0.25
CDH3-203ENST00000542274 NFE2L2Q16236 605 aa13.48□□□□□ -0.25
CDH3-203ENST00000542274 XIRP1Q702N8 1843 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms