RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 NGEFQ8N5V2 710 aa17.94■□□□□ 0.46
SFSWAP-210ENST00000541286 RAPGEF4Q8WZA2 1011 aa17.94■□□□□ 0.46
SFSWAP-210ENST00000541286 IL17REQ8NFR9 667 aa17.93■□□□□ 0.46
SFSWAP-210ENST00000541286 WDR63Q8IWG1 891 aa17.93■□□□□ 0.46
SFSWAP-210ENST00000541286 NECTIN2Q92692 538 aa17.93■□□□□ 0.46
SFSWAP-210ENST00000541286 IQSEC2Q5JU85 1478 aa17.93■□□□□ 0.46
SFSWAP-210ENST00000541286 USP54Q70EL1 1684 aa17.93■□□□□ 0.46
SFSWAP-210ENST00000541286 KCNQ3O43525 872 aa17.93■□□□□ 0.46
SFSWAP-210ENST00000541286 L1TD1Q5T7N2 865 aaKnown RBP17.93■□□□□ 0.46
SFSWAP-210ENST00000541286 RTL1A6NKG5 1358 aa17.92■□□□□ 0.46
SFSWAP-210ENST00000541286 CYP27B1O15528 508 aa17.92■□□□□ 0.46
SFSWAP-210ENST00000541286 RGPD1P0DJD0 1748 aa17.92■□□□□ 0.46
SFSWAP-210ENST00000541286 MVPQ14764 893 aaKnown RBP17.91■□□□□ 0.46
SFSWAP-210ENST00000541286 USP21Q9UK80 565 aa17.91■□□□□ 0.46
SFSWAP-210ENST00000541286 KDRP35968 1356 aa17.91■□□□□ 0.46
SFSWAP-210ENST00000541286 SSH1Q8WYL5 1049 aa17.91■□□□□ 0.46
SFSWAP-210ENST00000541286 DLG5Q8TDM6 1919 aa17.91■□□□□ 0.46
SFSWAP-210ENST00000541286 AFF2P51816 1311 aa17.9■□□□□ 0.46
SFSWAP-210ENST00000541286 TSPYL6Q8N831 410 aa17.9■□□□□ 0.46
SFSWAP-210ENST00000541286 ZNF428Q96B54 188 aa17.9■□□□□ 0.46
SFSWAP-210ENST00000541286 NOB1Q9ULX3 412 aaKnown RBP17.9■□□□□ 0.46
SFSWAP-210ENST00000541286 SLC39A6Q13433 755 aa17.89■□□□□ 0.46
SFSWAP-210ENST00000541286 TRIM27P14373 513 aa17.89■□□□□ 0.45
SFSWAP-210ENST00000541286 TBC1D2Q9BYX2 928 aa17.89■□□□□ 0.45
SFSWAP-210ENST00000541286 PTF1AQ7RTS3 328 aa17.88■□□□□ 0.45
SFSWAP-210ENST00000541286 TATP17735 454 aaPredicted RBP17.88■□□□□ 0.45
SFSWAP-210ENST00000541286 LMO7Q8WWI1 1683 aa17.88■□□□□ 0.45
SFSWAP-210ENST00000541286 RBM10P98175 930 aaKnown RBP17.87■□□□□ 0.45
SFSWAP-210ENST00000541286 SYTL4Q96C24 671 aaPredicted RBP17.87■□□□□ 0.45
SFSWAP-210ENST00000541286 ACSBG1Q96GR2 724 aa17.87■□□□□ 0.45
SFSWAP-210ENST00000541286 LNPKQ9C0E8 428 aa17.87■□□□□ 0.45
SFSWAP-210ENST00000541286 PRAMEF22A3QJZ6 481 aa17.87■□□□□ 0.45
SFSWAP-210ENST00000541286 BCL9LQ86UU0 1499 aa17.86■□□□□ 0.45
SFSWAP-210ENST00000541286 RTF1Q92541 710 aaKnown RBP17.86■□□□□ 0.45
SFSWAP-210ENST00000541286 MBIPQ9NS73 344 aa17.86■□□□□ 0.45
SFSWAP-210ENST00000541286 GNAT3A8MTJ3 354 aa17.86■□□□□ 0.45
SFSWAP-210ENST00000541286 ERBB4Q15303 1308 aa17.86■□□□□ 0.45
SFSWAP-210ENST00000541286 A0A0U1RQG5 324 aaPredicted RBP17.85■□□□□ 0.45
SFSWAP-210ENST00000541286 IL2RBP14784 551 aa17.85■□□□□ 0.45
SFSWAP-210ENST00000541286 TMEM57Q8N5G2 664 aa17.85■□□□□ 0.45
SFSWAP-210ENST00000541286 PHF23Q9BUL5 403 aaPredicted RBP17.85■□□□□ 0.45
SFSWAP-210ENST00000541286 C1orf115Q9H7X2 142 aa17.85■□□□□ 0.45
SFSWAP-210ENST00000541286 CARD10Q9BWT7 1032 aa17.85■□□□□ 0.45
SFSWAP-210ENST00000541286 PIP4K2AP48426 406 aaPredicted RBP17.85■□□□□ 0.45
SFSWAP-210ENST00000541286 UNC5CLQ8IV45 518 aa17.85■□□□□ 0.45
SFSWAP-210ENST00000541286 NFATC2IPQ8NCF5 419 aa17.85■□□□□ 0.45
SFSWAP-210ENST00000541286 FOXD4L1Q9NU39 408 aa17.85■□□□□ 0.45
SFSWAP-210ENST00000541286 KIF24Q5T7B8 1368 aa17.85■□□□□ 0.45
SFSWAP-210ENST00000541286 C8orf58Q8NAV2 365 aa17.84■□□□□ 0.45
SFSWAP-210ENST00000541286 TBC1D32Q96NH3 1257 aa17.84■□□□□ 0.45
SFSWAP-210ENST00000541286 C22orf23Q9BZE7 217 aa17.84■□□□□ 0.45
SFSWAP-210ENST00000541286 PLEKHO1Q53GL0 409 aaPredicted RBP17.83■□□□□ 0.45
SFSWAP-210ENST00000541286 C1orf141Q5JVX7 400 aa17.83■□□□□ 0.45
SFSWAP-210ENST00000541286 KCNQ4P56696 695 aa17.83■□□□□ 0.44
SFSWAP-210ENST00000541286 ZCRB1Q8TBF4 217 aaKnown RBP17.83■□□□□ 0.44
SFSWAP-210ENST00000541286 TRAK2O60296 914 aa17.83■□□□□ 0.44
SFSWAP-210ENST00000541286 ATF7IPQ6VMQ6 1270 aa17.83■□□□□ 0.44
SFSWAP-210ENST00000541286 CRB1P82279 1406 aa17.82■□□□□ 0.44
SFSWAP-210ENST00000541286 FAM208AQ9UK61 1670 aaKnown RBP17.82■□□□□ 0.44
SFSWAP-210ENST00000541286 SPATA31A1Q5TZJ5 1347 aa17.82■□□□□ 0.44
SFSWAP-210ENST00000541286 CLCN1P35523 988 aa17.82■□□□□ 0.44
SFSWAP-210ENST00000541286 PLCH1Q4KWH8 1693 aa17.82■□□□□ 0.44
SFSWAP-210ENST00000541286 PHKG2P15735 406 aa17.82■□□□□ 0.44
SFSWAP-210ENST00000541286 COL22A1Q8NFW1 1626 aaPredicted RBP17.82■□□□□ 0.44
SFSWAP-210ENST00000541286 RRP9O43818 475 aaKnown RBP17.81■□□□□ 0.44
SFSWAP-210ENST00000541286 GAS2L2Q8NHY3 880 aa17.81■□□□□ 0.44
SFSWAP-210ENST00000541286 QTRT2Q9H974 415 aaKnown RBP17.81■□□□□ 0.44
SFSWAP-210ENST00000541286 PODXL2Q9NZ53 605 aa17.81■□□□□ 0.44
SFSWAP-210ENST00000541286 DDX19BQ9UMR2 479 aa17.81■□□□□ 0.44
SFSWAP-210ENST00000541286 MCM4P33991 863 aa17.81■□□□□ 0.44
SFSWAP-210ENST00000541286 KCNQ2O43526 872 aa17.8■□□□□ 0.44
SFSWAP-210ENST00000541286 ANXA1P04083 346 aa17.8■□□□□ 0.44
SFSWAP-210ENST00000541286 ANTXR1Q9H6X2 564 aa17.8■□□□□ 0.44
SFSWAP-210ENST00000541286 TRIM44Q96DX7 344 aaPredicted RBP17.8■□□□□ 0.44
SFSWAP-210ENST00000541286 MAP3K5Q99683 1374 aa17.8■□□□□ 0.44
SFSWAP-210ENST00000541286 TSPYL4Q9UJ04 414 aa17.79■□□□□ 0.44
SFSWAP-210ENST00000541286 SPATA31A5Q5VU36 1347 aa17.79■□□□□ 0.44
SFSWAP-210ENST00000541286 SPATA31A7Q8IWB4 1347 aa17.79■□□□□ 0.44
SFSWAP-210ENST00000541286 CCDC27Q2M243 656 aa17.79■□□□□ 0.44
SFSWAP-210ENST00000541286 SLIT2O94813 1529 aa17.79■□□□□ 0.44
SFSWAP-210ENST00000541286 SPATA31A6Q5VVP1 1343 aa17.79■□□□□ 0.44
SFSWAP-210ENST00000541286 ESPNB1AK53 854 aa17.79■□□□□ 0.44
SFSWAP-210ENST00000541286 RNMTO43148 476 aaKnown RBP17.79■□□□□ 0.44
SFSWAP-210ENST00000541286 ILDR1Q86SU0 546 aaPredicted RBP17.79■□□□□ 0.44
SFSWAP-210ENST00000541286 PTCD1O75127 700 aaKnown RBP17.78■□□□□ 0.44
SFSWAP-210ENST00000541286 ANKRD45Q5TZF3 282 aa17.78■□□□□ 0.44
SFSWAP-210ENST00000541286 FNBP4Q8N3X1 1017 aaPredicted RBP17.78■□□□□ 0.44
SFSWAP-210ENST00000541286 FBXO41Q8TF61 875 aa17.78■□□□□ 0.44
SFSWAP-210ENST00000541286 KDM6AO15550 1401 aaPredicted RBP17.78■□□□□ 0.44
SFSWAP-210ENST00000541286 MARCH10Q8NA82 808 aaPredicted RBP17.77■□□□□ 0.44
SFSWAP-210ENST00000541286 TEFQ10587 303 aa17.77■□□□□ 0.44
SFSWAP-210ENST00000541286 COL14A1Q05707 1796 aaKnown RBP17.77■□□□□ 0.44
SFSWAP-210ENST00000541286 AKAP4Q5JQC9 854 aa17.77■□□□□ 0.43
SFSWAP-210ENST00000541286 HSCBQ8IWL3 235 aa17.77■□□□□ 0.43
SFSWAP-210ENST00000541286 RGS17Q9UGC6 210 aaPredicted RBP17.77■□□□□ 0.43
SFSWAP-210ENST00000541286 DDB1Q16531 1140 aa17.76■□□□□ 0.43
SFSWAP-210ENST00000541286 SPG7Q9UQ90 795 aa17.76■□□□□ 0.43
SFSWAP-210ENST00000541286 EXOC5O00471 708 aa17.76■□□□□ 0.43
SFSWAP-210ENST00000541286 EIF2S2P20042 333 aaKnown RBP17.76■□□□□ 0.43
SFSWAP-210ENST00000541286 APBB1O00213 710 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms