RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 ESYT1Q9BSJ8 1104 aa12.64□□□□□ -0.39
CDC42SE1-207ENST00000540998 TCHHQ07283 1943 aa12.64□□□□□ -0.39
CDC42SE1-207ENST00000540998 UQCRHLA0A096LP55 91 aa12.63□□□□□ -0.39
CDC42SE1-207ENST00000540998 UQCRHP07919 91 aa12.63□□□□□ -0.39
CDC42SE1-207ENST00000540998 PDLIM2Q96JY6 352 aa12.63□□□□□ -0.39
CDC42SE1-207ENST00000540998 IBTKQ9P2D0 1353 aaPredicted RBP12.63□□□□□ -0.39
CDC42SE1-207ENST00000540998 TPM2P07951 284 aa12.63□□□□□ -0.39
CDC42SE1-207ENST00000540998 NOL7Q9UMY1 257 aaKnown RBP12.63□□□□□ -0.39
CDC42SE1-207ENST00000540998 LRRFIP2Q9Y608 721 aaKnown RBP12.63□□□□□ -0.39
CDC42SE1-207ENST00000540998 MX1P20591 662 aa12.62□□□□□ -0.39
CDC42SE1-207ENST00000540998 LTV1Q96GA3 475 aaPredicted RBP12.62□□□□□ -0.39
CDC42SE1-207ENST00000540998 CWC22Q9HCG8 908 aaKnown RBP12.62□□□□□ -0.39
CDC42SE1-207ENST00000540998 PTMAP06454 111 aaKnown RBP12.62□□□□□ -0.39
CDC42SE1-207ENST00000540998 ACEP12821 1306 aa12.62□□□□□ -0.39
CDC42SE1-207ENST00000540998 CHMLP26374 656 aa12.61□□□□□ -0.39
CDC42SE1-207ENST00000540998 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.61□□□□□ -0.39
CDC42SE1-207ENST00000540998 A2ML1A8K2U0 1454 aa12.61□□□□□ -0.39
CDC42SE1-207ENST00000540998 BRD1O95696 1058 aa12.61□□□□□ -0.39
CDC42SE1-207ENST00000540998 PLCB2Q00722 1185 aa12.61□□□□□ -0.39
CDC42SE1-207ENST00000540998 ZKSCAN5Q9Y2L8 839 aa12.61□□□□□ -0.39
CDC42SE1-207ENST00000540998 USP48Q86UV5 1035 aa12.61□□□□□ -0.39
CDC42SE1-207ENST00000540998 OSCARQ8IYS5 282 aa12.61□□□□□ -0.39
CDC42SE1-207ENST00000540998 LRRCC1Q9C099 1032 aa12.61□□□□□ -0.39
CDC42SE1-207ENST00000540998 TTC21BQ7Z4L5 1316 aa12.61□□□□□ -0.39
CDC42SE1-207ENST00000540998 GNAI2P04899 355 aa12.6□□□□□ -0.39
CDC42SE1-207ENST00000540998 RIMBP3CA6NJZ7 1639 aa12.6□□□□□ -0.39
CDC42SE1-207ENST00000540998 RIMBP3BA6NNM3 1639 aa12.6□□□□□ -0.39
CDC42SE1-207ENST00000540998 RIMBP3Q9UFD9 1639 aa12.6□□□□□ -0.39
CDC42SE1-207ENST00000540998 RICTORQ6R327 1708 aa12.6□□□□□ -0.39
CDC42SE1-207ENST00000540998 HMMRO75330 724 aa12.6□□□□□ -0.39
CDC42SE1-207ENST00000540998 ANXA1P04083 346 aa12.6□□□□□ -0.39
CDC42SE1-207ENST00000540998 CYB5RLQ6IPT4 315 aa12.6□□□□□ -0.39
CDC42SE1-207ENST00000540998 USP25Q9UHP3 1055 aa12.6□□□□□ -0.39
CDC42SE1-207ENST00000540998 CNPY2Q9Y2B0 182 aa12.6□□□□□ -0.39
CDC42SE1-207ENST00000540998 AATKQ6ZMQ8 1374 aa12.6□□□□□ -0.39
CDC42SE1-207ENST00000540998 CRB1P82279 1406 aa12.6□□□□□ -0.39
CDC42SE1-207ENST00000540998 PTPRCP08575 1304 aa12.59□□□□□ -0.39
CDC42SE1-207ENST00000540998 FLIIQ13045 1269 aa12.59□□□□□ -0.39
CDC42SE1-207ENST00000540998 USHBP1Q8N6Y0 703 aa12.59□□□□□ -0.39
CDC42SE1-207ENST00000540998 RTF1Q92541 710 aaKnown RBP12.59□□□□□ -0.39
CDC42SE1-207ENST00000540998 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.59□□□□□ -0.397e-17■■■□□ 16.2
CDC42SE1-207ENST00000540998 COL9A3Q14050 684 aaPredicted RBP12.59□□□□□ -0.39
CDC42SE1-207ENST00000540998 PHAXQ9H814 394 aaKnown RBP12.59□□□□□ -0.39
CDC42SE1-207ENST00000540998 TTC12Q9H892 705 aaPredicted RBP12.59□□□□□ -0.39
CDC42SE1-207ENST00000540998 PRDM10Q9NQV6 1147 aa12.59□□□□□ -0.39
CDC42SE1-207ENST00000540998 DLC1Q96QB1 1528 aa12.59□□□□□ -0.39
CDC42SE1-207ENST00000540998 SALL3Q9BXA9 1300 aa12.59□□□□□ -0.39
CDC42SE1-207ENST00000540998 ROBO2Q9HCK4 1378 aa12.58□□□□□ -0.4
CDC42SE1-207ENST00000540998 SLC26A8Q96RN1 970 aa12.58□□□□□ -0.4
CDC42SE1-207ENST00000540998 SPG7Q9UQ90 795 aa12.58□□□□□ -0.4
CDC42SE1-207ENST00000540998 RASEFQ8IZ41 740 aa12.58□□□□□ -0.4
CDC42SE1-207ENST00000540998 SRCIN1Q9C0H9 1055 aa12.58□□□□□ -0.4
CDC42SE1-207ENST00000540998 TSPY26PQ9H489 355 aa12.58□□□□□ -0.4
CDC42SE1-207ENST00000540998 CHMP3Q9Y3E7 222 aa12.58□□□□□ -0.4
CDC42SE1-207ENST00000540998 KIF24Q5T7B8 1368 aa12.57□□□□□ -0.4
CDC42SE1-207ENST00000540998 LARGE1O95461 756 aa12.57□□□□□ -0.4
CDC42SE1-207ENST00000540998 HCLS1P14317 486 aaPredicted RBP12.57□□□□□ -0.4
CDC42SE1-207ENST00000540998 PDCL3Q9H2J4 239 aa12.57□□□□□ -0.4
CDC42SE1-207ENST00000540998 PEAK1Q9H792 1746 aa12.57□□□□□ -0.4
CDC42SE1-207ENST00000540998 NEO1Q92859 1461 aa12.57□□□□□ -0.4
CDC42SE1-207ENST00000540998 FIBPO43427 364 aa12.57□□□□□ -0.4
CDC42SE1-207ENST00000540998 ZNF500O60304 480 aaPredicted RBP12.57□□□□□ -0.4
CDC42SE1-207ENST00000540998 EYA1Q99502 592 aa12.57□□□□□ -0.4
CDC42SE1-207ENST00000540998 EIF2S2P20042 333 aaKnown RBP12.57□□□□□ -0.4
CDC42SE1-207ENST00000540998 STK31Q9BXU1 1019 aa12.57□□□□□ -0.4
CDC42SE1-207ENST00000540998 FAM69CQ0P6D2 419 aa12.56□□□□□ -0.4
CDC42SE1-207ENST00000540998 DNTTIP2Q5QJE6 756 aaKnown RBP12.56□□□□□ -0.4
CDC42SE1-207ENST00000540998 OSBPL3Q9H4L5 887 aa12.56□□□□□ -0.4
CDC42SE1-207ENST00000540998 CCT4P50991 539 aaKnown RBP12.56□□□□□ -0.4
CDC42SE1-207ENST00000540998 CUL4AQ13619 759 aa12.56□□□□□ -0.4
CDC42SE1-207ENST00000540998 REREQ9P2R6 1566 aa12.55□□□□□ -0.4
CDC42SE1-207ENST00000540998 SURF6O75683 361 aaKnown RBP12.55□□□□□ -0.4
CDC42SE1-207ENST00000540998 CWC27Q6UX04 472 aaKnown RBP12.55□□□□□ -0.4
CDC42SE1-207ENST00000540998 KIAA0232Q92628 1395 aa12.55□□□□□ -0.4
CDC42SE1-207ENST00000540998 BCL11BQ9C0K0 894 aaPredicted RBP12.55□□□□□ -0.4
CDC42SE1-207ENST00000540998 USP44Q9H0E7 712 aa12.55□□□□□ -0.4
CDC42SE1-207ENST00000540998 TSPOAP1O95153 1857 aa12.55□□□□□ -0.4
CDC42SE1-207ENST00000540998 SETD1AO15047 1707 aaKnown RBP12.55□□□□□ -0.4
CDC42SE1-207ENST00000540998 RPAP1Q9BWH6 1393 aaPredicted RBP12.55□□□□□ -0.4
CDC42SE1-207ENST00000540998 AMPHP49418 695 aa12.54□□□□□ -0.4
CDC42SE1-207ENST00000540998 GIMAP6Q6P9H5 292 aa12.54□□□□□ -0.4
CDC42SE1-207ENST00000540998 CEP170BQ9Y4F5 1589 aaPredicted RBP12.54□□□□□ -0.4
CDC42SE1-207ENST00000540998 NBPF7P0C2Y1 421 aaPredicted RBP12.54□□□□□ -0.4
CDC42SE1-207ENST00000540998 ATP8B2P98198 1209 aa12.54□□□□□ -0.4
CDC42SE1-207ENST00000540998 FAM173BQ6P4H8 233 aa12.54□□□□□ -0.4
CDC42SE1-207ENST00000540998 PPP1R42Q7Z4L9 355 aa12.54□□□□□ -0.4
CDC42SE1-207ENST00000540998 CCDC39Q9UFE4 941 aa12.54□□□□□ -0.4
CDC42SE1-207ENST00000540998 NRXN3Q9Y4C0 1643 aa12.54□□□□□ -0.4
CDC42SE1-207ENST00000540998 MBD3O95983 291 aa12.53□□□□□ -0.4
CDC42SE1-207ENST00000540998 MCCP23508 829 aa12.53□□□□□ -0.4
CDC42SE1-207ENST00000540998 AK2P54819 239 aa12.53□□□□□ -0.4
CDC42SE1-207ENST00000540998 SOS1Q07889 1333 aaPredicted RBP12.53□□□□□ -0.4
CDC42SE1-207ENST00000540998 C3P01024 1663 aa12.53□□□□□ -0.4
CDC42SE1-207ENST00000540998 TCEANC2Q96MN5 208 aa12.53□□□□□ -0.4
CDC42SE1-207ENST00000540998 AP5Z1O43299 807 aa12.53□□□□□ -0.4
CDC42SE1-207ENST00000540998 RUFY3Q7L099 469 aa12.53□□□□□ -0.4
CDC42SE1-207ENST00000540998 IL17REQ8NFR9 667 aa12.53□□□□□ -0.4
CDC42SE1-207ENST00000540998 SNX14Q9Y5W7 946 aa12.53□□□□□ -0.4
CDC42SE1-207ENST00000540998 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.52□□□□□ -0.41
CDC42SE1-207ENST00000540998 UBTFL1P0CB47 393 aaPredicted RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms