RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 LRRFIP2Q9Y608 721 aaKnown RBP16.75■□□□□ 0.27
USP3-204ENST00000540797 NKTRP30414 1462 aaKnown RBP16.75■□□□□ 0.27
USP3-204ENST00000540797 JAKMIP1Q96N16 626 aaKnown RBP16.75■□□□□ 0.27
USP3-204ENST00000540797 ARID3AQ99856 593 aa16.75■□□□□ 0.27
USP3-204ENST00000540797 KINO60870 393 aaKnown RBP16.75■□□□□ 0.27
USP3-204ENST00000540797 PTPRCP08575 1304 aa16.75■□□□□ 0.27
USP3-204ENST00000540797 IMMTQ16891 758 aaKnown RBP16.75■□□□□ 0.27
USP3-204ENST00000540797 ZNF219Q9P2Y4 722 aaPredicted RBP16.75■□□□□ 0.27
USP3-204ENST00000540797 RFC4P35249 363 aa16.74■□□□□ 0.27
USP3-204ENST00000540797 CEBPZQ03701 1054 aaKnown RBP16.74■□□□□ 0.27
USP3-204ENST00000540797 KRT18P05783 430 aaKnown RBP16.74■□□□□ 0.27
USP3-204ENST00000540797 USP5P45974 858 aa16.74■□□□□ 0.27
USP3-204ENST00000540797 CABLES1Q8TDN4 633 aa16.74■□□□□ 0.27
USP3-204ENST00000540797 BOLA2Q9H3K6 86 aa16.74■□□□□ 0.27
USP3-204ENST00000540797 PDRG1Q9NUG6 133 aa16.74■□□□□ 0.27
USP3-204ENST00000540797 SMARCA5O60264 1052 aaPredicted RBP16.74■□□□□ 0.27
USP3-204ENST00000540797 MBIPQ9NS73 344 aa16.73■□□□□ 0.27
USP3-204ENST00000540797 CCDC70Q6NSX1 233 aa16.73■□□□□ 0.27
USP3-204ENST00000540797 DZIP1Q86YF9 867 aaKnown RBP16.73■□□□□ 0.27
USP3-204ENST00000540797 JMYQ8N9B5 988 aa16.73■□□□□ 0.27
USP3-204ENST00000540797 CDKL5O76039 1030 aa16.73■□□□□ 0.27
USP3-204ENST00000540797 AEBP1Q8IUX7 1158 aa16.73■□□□□ 0.27
USP3-204ENST00000540797 CWC25Q9NXE8 425 aaPredicted RBP16.73■□□□□ 0.27
USP3-204ENST00000540797 ATP5J2-PTCD1G3V325 749 aa16.73■□□□□ 0.27
USP3-204ENST00000540797 KCNA6P17658 529 aa16.73■□□□□ 0.27
USP3-204ENST00000540797 ACSBG1Q96GR2 724 aa16.73■□□□□ 0.27
USP3-204ENST00000540797 PPP1R42Q7Z4L9 355 aa16.72■□□□□ 0.27
USP3-204ENST00000540797 FIBPO43427 364 aa16.72■□□□□ 0.27
USP3-204ENST00000540797 POLR3DP05423 398 aaPredicted RBP16.72■□□□□ 0.27
USP3-204ENST00000540797 ZNF287Q9HBT7 754 aa16.72■□□□□ 0.27
USP3-204ENST00000540797 MPHOSPH10O00566 681 aaKnown RBP16.72■□□□□ 0.27
USP3-204ENST00000540797 MAP3K12Q12852 859 aa16.72■□□□□ 0.27
USP3-204ENST00000540797 ZNF592Q92610 1267 aa16.72■□□□□ 0.27
USP3-204ENST00000540797 DDB1Q16531 1140 aa16.71■□□□□ 0.27
USP3-204ENST00000540797 CRACR2BQ8N4Y2 399 aaPredicted RBP16.71■□□□□ 0.27
USP3-204ENST00000540797 CCDC8Q9H0W5 538 aaPredicted RBP16.71■□□□□ 0.27
USP3-204ENST00000540797 C6orf229H3BNL8 230 aa16.71■□□□□ 0.27
USP3-204ENST00000540797 HOMER1Q86YM7 354 aa16.71■□□□□ 0.27
USP3-204ENST00000540797 CDC5LQ99459 802 aaKnown RBP16.71■□□□□ 0.27
USP3-204ENST00000540797 PRAG1Q86YV5 1406 aa16.71■□□□□ 0.27
USP3-204ENST00000540797 OFD1O75665 1012 aa16.7■□□□□ 0.26
USP3-204ENST00000540797 DDX46Q7L014 1031 aaKnown RBP16.7■□□□□ 0.26
USP3-204ENST00000540797 TBX22Q9Y458 520 aa16.7■□□□□ 0.26
USP3-204ENST00000540797 PI4KAP2A4QPH2 592 aa16.7■□□□□ 0.26
USP3-204ENST00000540797 PI4KAP1Q8N8J0 262 aa16.7■□□□□ 0.26
USP3-204ENST00000540797 PIK3R4Q99570 1358 aa16.7■□□□□ 0.26
USP3-204ENST00000540797 RALGAPBQ86X10 1494 aa16.7■□□□□ 0.26
USP3-204ENST00000540797 MINDY4BA8MYZ0 360 aa16.7■□□□□ 0.26
USP3-204ENST00000540797 WWC2Q6AWC2 1192 aa16.7■□□□□ 0.26
USP3-204ENST00000540797 ZSCAN31Q96LW9 406 aaPredicted RBP16.7■□□□□ 0.26
USP3-204ENST00000540797 NOL7Q9UMY1 257 aaKnown RBP16.7■□□□□ 0.26
USP3-204ENST00000540797 CT47A1Q5JQC4 288 aaPredicted RBP16.69■□□□□ 0.26
USP3-204ENST00000540797 LARP1BQ659C4 914 aaKnown RBP16.69■□□□□ 0.26
USP3-204ENST00000540797 LRRC59Q96AG4 307 aaKnown RBP16.69■□□□□ 0.26
USP3-204ENST00000540797 TCOF1Q13428 1488 aaKnown RBP16.69■□□□□ 0.26
USP3-204ENST00000540797 LMTK3Q96Q04 1460 aa16.69■□□□□ 0.26
USP3-204ENST00000540797 ZRANB1Q9UGI0 708 aa16.69■□□□□ 0.26
USP3-204ENST00000540797 MBD3O95983 291 aa16.69■□□□□ 0.26
USP3-204ENST00000540797 UBE3BQ7Z3V4 1068 aa16.69■□□□□ 0.26
USP3-204ENST00000540797 U3KPZ7 1027 aaPredicted RBP16.69■□□□□ 0.26
USP3-204ENST00000540797 K7ELQ4 463 aaPredicted RBP16.69■□□□□ 0.26
USP3-204ENST00000540797 NAP1L1P55209 391 aaKnown RBP16.69■□□□□ 0.26
USP3-204ENST00000540797 LDHAL6AQ6ZMR3 332 aa16.69■□□□□ 0.26
USP3-204ENST00000540797 MKNK2Q9HBH9 465 aa16.69■□□□□ 0.26
USP3-204ENST00000540797 IL16Q14005 1332 aa16.69■□□□□ 0.26
USP3-204ENST00000540797 PRPF40AO75400 957 aaKnown RBP16.69■□□□□ 0.26
USP3-204ENST00000540797 ATP6V1AP38606 617 aa16.69■□□□□ 0.26
USP3-204ENST00000540797 TRIM27P14373 513 aa16.68■□□□□ 0.26
USP3-204ENST00000540797 ATP10AO60312 1499 aa16.68■□□□□ 0.26
USP3-204ENST00000540797 ANXA1P04083 346 aa16.68■□□□□ 0.26
USP3-204ENST00000540797 SMARCC1Q92922 1105 aaPredicted RBP16.68■□□□□ 0.26
USP3-204ENST00000540797 NAPBQ9H115 298 aa16.68■□□□□ 0.26
USP3-204ENST00000540797 IL2RBP14784 551 aa16.68■□□□□ 0.26
USP3-204ENST00000540797 AKAP4Q5JQC9 854 aa16.68■□□□□ 0.26
USP3-204ENST00000540797 ANKRD13DQ6ZTN6 518 aa16.68■□□□□ 0.26
USP3-204ENST00000540797 LETM1O95202 739 aaPredicted RBP16.68■□□□□ 0.26
USP3-204ENST00000540797 EIF4A2Q14240 407 aaKnown RBP16.68■□□□□ 0.26
USP3-204ENST00000540797 PIBF1Q8WXW3 757 aa16.68■□□□□ 0.26
USP3-204ENST00000540797 NBPF6Q5VWK0 638 aa16.67■□□□□ 0.26
USP3-204ENST00000540797 NBPF5PQ86XG9 351 aaPredicted RBP16.67■□□□□ 0.26
USP3-204ENST00000540797 NBPF4Q96M43 638 aa16.67■□□□□ 0.26
USP3-204ENST00000540797 SHANK2Q9UPX8 1470 aa16.67■□□□□ 0.26
USP3-204ENST00000540797 WDR33Q9C0J8 1336 aaKnown RBP16.67■□□□□ 0.26
USP3-204ENST00000540797 SLF2Q8IX21 1173 aa16.67■□□□□ 0.26
USP3-204ENST00000540797 ZNF622Q969S3 477 aaKnown RBP eCLIP16.67■□□□□ 0.26
USP3-204ENST00000540797 ME1P48163 572 aa16.66■□□□□ 0.26
USP3-204ENST00000540797 SLC39A6Q13433 755 aa16.66■□□□□ 0.26
USP3-204ENST00000540797 C20orf194Q5TEA3 1177 aa16.66■□□□□ 0.26
USP3-204ENST00000540797 PDILTQ8N807 584 aa16.66■□□□□ 0.26
USP3-204ENST00000540797 UHRF1BP1Q6BDS2 1440 aa16.66■□□□□ 0.26
USP3-204ENST00000540797 DISP1Q96F81 1524 aa16.66■□□□□ 0.26
USP3-204ENST00000540797 CASTP20810 708 aaKnown RBP16.66■□□□□ 0.26
USP3-204ENST00000540797 ST5P78524 1137 aa16.66■□□□□ 0.26
USP3-204ENST00000540797 GCP02774 474 aa16.66■□□□□ 0.26
USP3-204ENST00000540797 NFKBIBQ15653 356 aa16.66■□□□□ 0.26
USP3-204ENST00000540797 WASF1Q92558 559 aa16.66■□□□□ 0.26
USP3-204ENST00000540797 BACH2Q9BYV9 841 aa16.66■□□□□ 0.26
USP3-204ENST00000540797 CAVIN1Q6NZI2 390 aaKnown RBP16.66■□□□□ 0.26
USP3-204ENST00000540797 PUS7Q96PZ0 661 aaKnown RBP16.66■□□□□ 0.26
USP3-204ENST00000540797 MAGEC2Q9UBF1 373 aaPredicted RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms