RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 MAP4K4O95819 1239 aaPredicted RBP13.62□□□□□ -0.23
SYNE1-237ENST00000539504 IL1RAPL2Q9NP60 686 aa13.62□□□□□ -0.23
SYNE1-237ENST00000539504 LARP6Q9BRS8 491 aaKnown RBP13.61□□□□□ -0.23
SYNE1-237ENST00000539504 SIGLEC1Q9BZZ2 1709 aa13.61□□□□□ -0.23
SYNE1-237ENST00000539504 FOXO3O43524 673 aa13.61□□□□□ -0.23
SYNE1-237ENST00000539504 CHMLP26374 656 aa13.61□□□□□ -0.23
SYNE1-237ENST00000539504 HSP90AB2PQ58FF8 381 aa13.61□□□□□ -0.23
SYNE1-237ENST00000539504 WDR33Q9C0J8 1336 aaKnown RBP13.61□□□□□ -0.23
SYNE1-237ENST00000539504 ARHGAP31Q2M1Z3 1444 aa13.61□□□□□ -0.23
SYNE1-237ENST00000539504 OSBPL3Q9H4L5 887 aa13.6□□□□□ -0.23
SYNE1-237ENST00000539504 CDC42BPGQ6DT37 1551 aa13.6□□□□□ -0.23
SYNE1-237ENST00000539504 ATP7BP35670 1465 aa13.6□□□□□ -0.23
SYNE1-237ENST00000539504 CDK12Q9NYV4 1490 aaPredicted RBP13.6□□□□□ -0.23
SYNE1-237ENST00000539504 CUL4AQ13619 759 aa13.6□□□□□ -0.23
SYNE1-237ENST00000539504 INTS4Q96HW7 963 aaKnown RBP13.59□□□□□ -0.23
SYNE1-237ENST00000539504 PNMA6EA0A0J9YXQ4 647 aa13.59□□□□□ -0.23
SYNE1-237ENST00000539504 GNAI3P08754 354 aa13.59□□□□□ -0.23
SYNE1-237ENST00000539504 MTERF4Q7Z6M4 381 aaKnown RBP13.59□□□□□ -0.23
SYNE1-237ENST00000539504 NUTM1Q86Y26 1132 aa13.59□□□□□ -0.23
SYNE1-237ENST00000539504 TTC12Q9H892 705 aaPredicted RBP13.59□□□□□ -0.23
SYNE1-237ENST00000539504 AATKQ6ZMQ8 1374 aa13.59□□□□□ -0.23
SYNE1-237ENST00000539504 ANKRD26Q9UPS8 1709 aa13.59□□□□□ -0.23
SYNE1-237ENST00000539504 FIBPO43427 364 aa13.59□□□□□ -0.23
SYNE1-237ENST00000539504 RGS12O14924 1447 aa13.59□□□□□ -0.23
SYNE1-237ENST00000539504 CPSF1Q10570 1443 aaKnown RBP13.59□□□□□ -0.23
SYNE1-237ENST00000539504 HCLS1P14317 486 aaPredicted RBP13.58□□□□□ -0.23
SYNE1-237ENST00000539504 ANAPC15P60006 121 aa13.58□□□□□ -0.23
SYNE1-237ENST00000539504 PRDM10Q9NQV6 1147 aa13.58□□□□□ -0.23
SYNE1-237ENST00000539504 KNDC1Q76NI1 1749 aa13.58□□□□□ -0.24
SYNE1-237ENST00000539504 ALKQ9UM73 1620 aa13.58□□□□□ -0.24
SYNE1-237ENST00000539504 UNC5CLQ8IV45 518 aa13.58□□□□□ -0.24
SYNE1-237ENST00000539504 C17orf53Q8N3J3 647 aaPredicted RBP13.58□□□□□ -0.24
SYNE1-237ENST00000539504 TSC1Q92574 1164 aa13.58□□□□□ -0.24
SYNE1-237ENST00000539504 CNPY2Q9Y2B0 182 aa13.58□□□□□ -0.24
SYNE1-237ENST00000539504 YEATS2Q9ULM3 1422 aa13.58□□□□□ -0.24
SYNE1-237ENST00000539504 LRRFIP2Q9Y608 721 aaKnown RBP13.58□□□□□ -0.24
SYNE1-237ENST00000539504 MAP2P11137 1827 aaKnown RBP13.58□□□□□ -0.24
SYNE1-237ENST00000539504 KIAA0232Q92628 1395 aa13.58□□□□□ -0.24
SYNE1-237ENST00000539504 DTNBO60941 627 aa13.57□□□□□ -0.24
SYNE1-237ENST00000539504 ADCY5O95622 1261 aa13.57□□□□□ -0.24
SYNE1-237ENST00000539504 FAM184AQ8NB25 1140 aa13.57□□□□□ -0.24
SYNE1-237ENST00000539504 SRCIN1Q9C0H9 1055 aa13.57□□□□□ -0.24
SYNE1-237ENST00000539504 JARID2Q92833 1246 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-237ENST00000539504 FLIIQ13045 1269 aa13.56□□□□□ -0.24
SYNE1-237ENST00000539504 CCDC183Q5T5S1 534 aa13.56□□□□□ -0.24
SYNE1-237ENST00000539504 KIF20BQ96Q89 1820 aa13.56□□□□□ -0.24
SYNE1-237ENST00000539504 SMC3Q9UQE7 1217 aa13.56□□□□□ -0.24
SYNE1-237ENST00000539504 SURF6O75683 361 aaKnown RBP13.56□□□□□ -0.24
SYNE1-237ENST00000539504 NOLC1Q14978 699 aaKnown RBP eCLIP13.56□□□□□ -0.24
SYNE1-237ENST00000539504 UBTFL1P0CB47 393 aaPredicted RBP13.55□□□□□ -0.24
SYNE1-237ENST00000539504 ATP8B2P98198 1209 aa13.55□□□□□ -0.24
SYNE1-237ENST00000539504 MTHFSDQ2M296 383 aaKnown RBP13.55□□□□□ -0.24
SYNE1-237ENST00000539504 FAM177BA6PVY3 158 aa13.55□□□□□ -0.24
SYNE1-237ENST00000539504 CCDC30Q5VVM6 783 aa13.54□□□□□ -0.24
SYNE1-237ENST00000539504 CHMP3Q9Y3E7 222 aa13.54□□□□□ -0.24
SYNE1-237ENST00000539504 UVSSAQ2YD98 709 aa13.54□□□□□ -0.24
SYNE1-237ENST00000539504 TTC21BQ7Z4L5 1316 aa13.54□□□□□ -0.24
SYNE1-237ENST00000539504 AMPHP49418 695 aa13.53□□□□□ -0.24
SYNE1-237ENST00000539504 OS9Q13438 667 aaPredicted RBP13.53□□□□□ -0.24
SYNE1-237ENST00000539504 GIMAP6Q6P9H5 292 aa13.53□□□□□ -0.24
SYNE1-237ENST00000539504 ZSCAN22P10073 491 aaPredicted RBP13.53□□□□□ -0.24
SYNE1-237ENST00000539504 HMGN5P82970 282 aaKnown RBP13.53□□□□□ -0.24
SYNE1-237ENST00000539504 SPC24Q8NBT2 197 aa13.53□□□□□ -0.24
SYNE1-237ENST00000539504 MYRIPQ8NFW9 859 aa13.53□□□□□ -0.24
SYNE1-237ENST00000539504 IL25Q9H293 177 aa13.53□□□□□ -0.24
SYNE1-237ENST00000539504 CPS1P31327 1500 aa13.53□□□□□ -0.24
SYNE1-237ENST00000539504 STX6O43752 255 aa13.53□□□□□ -0.24
SYNE1-237ENST00000539504 PIBF1Q8WXW3 757 aa13.53□□□□□ -0.24
SYNE1-237ENST00000539504 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.53□□□□□ -0.24
SYNE1-237ENST00000539504 ATP6V1DQ9Y5K8 247 aa13.53□□□□□ -0.24
SYNE1-237ENST00000539504 VPS37CA5D8V6 355 aaPredicted RBP13.52□□□□□ -0.24
SYNE1-237ENST00000539504 CPA1P15085 419 aa13.52□□□□□ -0.24
SYNE1-237ENST00000539504 CWC27Q6UX04 472 aaKnown RBP13.52□□□□□ -0.24
SYNE1-237ENST00000539504 ESF1Q9H501 851 aaKnown RBP13.52□□□□□ -0.24
SYNE1-237ENST00000539504 LETM1O95202 739 aaPredicted RBP13.52□□□□□ -0.25
SYNE1-237ENST00000539504 SPG7Q9UQ90 795 aa13.52□□□□□ -0.25
SYNE1-237ENST00000539504 MYO5BQ9ULV0 1848 aa13.52□□□□□ -0.25
SYNE1-237ENST00000539504 CLTCQ00610 1675 aaKnown RBP13.52□□□□□ -0.25
SYNE1-237ENST00000539504 ACEP12821 1306 aa13.52□□□□□ -0.25
SYNE1-237ENST00000539504 MAP3K19Q56UN5 1328 aa13.52□□□□□ -0.25
SYNE1-237ENST00000539504 SYT1P21579 422 aa13.52□□□□□ -0.25
SYNE1-237ENST00000539504 AK2P54819 239 aa13.52□□□□□ -0.25
SYNE1-237ENST00000539504 UBE2HP62256 183 aa13.52□□□□□ -0.25
SYNE1-237ENST00000539504 TMEM131LA2VDJ0 1609 aa13.52□□□□□ -0.25
SYNE1-237ENST00000539504 HSPA4P34932 840 aa13.51□□□□□ -0.25
SYNE1-237ENST00000539504 CHAF1AQ13111 956 aaPredicted RBP13.51□□□□□ -0.25
SYNE1-237ENST00000539504 DDX54Q8TDD1 881 aaKnown RBP13.51□□□□□ -0.25
SYNE1-237ENST00000539504 METP08581 1390 aa13.51□□□□□ -0.25
SYNE1-237ENST00000539504 CCDC83Q8IWF9 413 aa13.51□□□□□ -0.25
SYNE1-237ENST00000539504 LIMCH1Q9UPQ0 1083 aa13.51□□□□□ -0.25
SYNE1-237ENST00000539504 SALL3Q9BXA9 1300 aa13.51□□□□□ -0.25
SYNE1-237ENST00000539504 PRR36Q9H6K5 1346 aa13.51□□□□□ -0.25
SYNE1-237ENST00000539504 DIP2CQ9Y2E4 1556 aa13.51□□□□□ -0.25
SYNE1-237ENST00000539504 PRIMPOLQ96LW4 560 aa13.51□□□□□ -0.25
SYNE1-237ENST00000539504 EIF2S2P20042 333 aaKnown RBP13.5□□□□□ -0.25
SYNE1-237ENST00000539504 CASTP20810 708 aaKnown RBP13.5□□□□□ -0.25
SYNE1-237ENST00000539504 KIF3AQ9Y496 699 aa13.5□□□□□ -0.25
SYNE1-237ENST00000539504 KCNJ4P48050 445 aa13.5□□□□□ -0.25
SYNE1-237ENST00000539504 PPP1R42Q7Z4L9 355 aa13.5□□□□□ -0.25
SYNE1-237ENST00000539504 CNTROBQ8N137 903 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms